Query psy15160
Match_columns 366
No_of_seqs 209 out of 432
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:08:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2669|consensus 100.0 1.7E-50 3.7E-55 391.9 18.2 284 1-359 1-285 (325)
2 smart00582 RPR domain present 99.9 1.3E-27 2.9E-32 202.4 11.8 119 8-127 1-120 (121)
3 cd03562 CID CID (CTD-Interacti 99.9 3.3E-24 7.2E-29 180.3 11.1 114 3-120 1-114 (114)
4 PF04818 CTD_bind: RNA polymer 99.8 1.2E-18 2.6E-23 132.8 5.9 63 56-119 1-64 (64)
5 KOG0151|consensus 99.7 1.6E-16 3.4E-21 165.5 10.6 132 1-132 428-571 (877)
6 PF12243 CTK3: CTD kinase subu 99.6 3E-14 6.4E-19 124.9 14.2 126 6-131 7-136 (139)
7 KOG4368|consensus 99.1 2.6E-10 5.7E-15 117.5 10.7 124 6-130 103-234 (757)
8 KOG2669|consensus 98.8 3.7E-08 7.9E-13 96.9 9.8 158 181-359 87-246 (325)
9 KOG0132|consensus 98.6 1.2E-07 2.7E-12 100.8 7.6 123 7-131 5-136 (894)
10 KOG2071|consensus 97.6 0.00015 3.2E-09 76.3 8.1 121 7-131 7-135 (579)
11 PF04818 CTD_bind: RNA polymer 92.5 0.024 5.2E-07 42.9 -1.0 32 181-213 33-64 (64)
12 cd00197 VHS_ENTH_ANTH VHS, ENT 92.2 1.2 2.7E-05 37.1 9.0 93 19-114 17-115 (115)
13 PF00790 VHS: VHS domain; Int 91.9 2.1 4.6E-05 37.2 10.4 108 21-131 24-137 (140)
14 cd03561 VHS VHS domain family; 89.8 2 4.2E-05 37.2 8.1 94 20-115 18-113 (133)
15 smart00582 RPR domain present 86.8 0.19 4E-06 42.3 -0.1 39 182-221 82-120 (121)
16 smart00288 VHS Domain present 86.2 6.5 0.00014 34.0 9.2 91 21-114 19-111 (133)
17 cd03567 VHS_GGA VHS domain fam 81.9 8 0.00017 34.0 8.0 92 23-114 22-116 (139)
18 cd03569 VHS_Hrs_Vps27p VHS dom 75.8 16 0.00034 32.2 8.0 89 22-114 24-114 (142)
19 cd03568 VHS_STAM VHS domain fa 75.7 17 0.00036 32.1 8.1 107 21-131 19-129 (144)
20 cd03562 CID CID (CTD-Interacti 72.8 0.69 1.5E-05 38.6 -1.4 33 180-213 81-113 (114)
21 KOG4570|consensus 72.4 1.2E+02 0.0026 31.0 14.8 96 16-126 73-175 (418)
22 PF02185 HR1: Hr1 repeat; Int 72.2 14 0.00031 28.3 6.0 51 308-358 2-52 (70)
23 cd00089 HR1 Protein kinase C-r 71.1 14 0.0003 28.5 5.8 52 307-358 9-61 (72)
24 PF05600 DUF773: Protein of un 69.8 67 0.0015 34.2 12.3 44 291-334 398-455 (507)
25 KOG0993|consensus 65.3 24 0.00052 36.6 7.5 59 293-354 117-184 (542)
26 PF14662 CCDC155: Coiled-coil 60.1 85 0.0018 29.4 9.5 54 270-330 1-55 (193)
27 smart00742 Hr1 Rho effector or 57.1 59 0.0013 23.9 6.6 52 308-360 2-53 (57)
28 PF12998 ING: Inhibitor of gro 54.9 19 0.00041 29.1 4.0 43 322-364 58-100 (105)
29 PF07765 KIP1: KIP1-like prote 54.6 35 0.00077 27.1 5.2 54 276-342 18-71 (74)
30 KOG1087|consensus 49.6 66 0.0014 34.1 7.9 97 30-129 29-131 (470)
31 PF05791 Bacillus_HBL: Bacillu 49.5 47 0.001 30.4 6.1 78 270-357 103-181 (184)
32 PF04394 DUF536: Protein of un 47.0 86 0.0019 22.5 5.8 40 318-357 3-42 (45)
33 PF03392 OS-D: Insect pheromon 46.8 45 0.00098 27.5 5.0 43 73-116 30-74 (95)
34 cd03565 VHS_Tom1 VHS domain fa 45.8 99 0.0021 27.1 7.3 93 20-114 19-115 (141)
35 PF01417 ENTH: ENTH domain; I 45.3 45 0.00098 28.2 5.0 89 19-113 20-120 (125)
36 KOG2199|consensus 44.0 2.2E+02 0.0048 29.7 10.3 110 1-120 1-122 (462)
37 PLN03223 Polycystin cation cha 43.7 92 0.002 37.2 8.3 78 287-364 1534-1627(1634)
38 PF01603 B56: Protein phosphat 42.5 54 0.0012 33.7 5.9 91 20-117 236-326 (409)
39 KOG4025|consensus 40.1 1.3E+02 0.0029 27.7 7.3 57 306-362 102-169 (207)
40 PRK14068 exodeoxyribonuclease 38.6 1.5E+02 0.0033 23.5 6.6 60 301-364 7-66 (76)
41 PF06295 DUF1043: Protein of u 37.6 2.3E+02 0.005 24.4 8.2 67 293-359 25-92 (128)
42 TIGR01280 xseB exodeoxyribonuc 37.5 1.6E+02 0.0036 22.6 6.5 58 302-363 3-60 (67)
43 PF12588 PSDC: Phophatidylseri 35.9 1.2E+02 0.0025 27.0 6.2 89 21-113 3-110 (141)
44 PF06008 Laminin_I: Laminin Do 34.9 3.1E+02 0.0068 26.2 9.6 21 272-292 129-150 (264)
45 PF10819 DUF2564: Protein of u 34.9 79 0.0017 25.4 4.4 24 329-352 55-78 (79)
46 PF02601 Exonuc_VII_L: Exonucl 33.4 3.3E+02 0.0072 26.6 9.7 19 298-316 141-159 (319)
47 PRK14063 exodeoxyribonuclease 32.3 2.4E+02 0.0052 22.3 6.9 56 301-360 6-61 (76)
48 TIGR01010 BexC_CtrB_KpsE polys 31.8 3.4E+02 0.0074 27.0 9.6 59 290-353 140-198 (362)
49 PF12999 PRKCSH-like: Glucosid 31.8 3.5E+02 0.0076 25.0 8.8 51 308-358 122-172 (176)
50 PF12464 Mac: Maltose acetyltr 31.6 37 0.00079 24.4 2.0 42 288-329 7-48 (55)
51 PRK05014 hscB co-chaperone Hsc 30.2 2.6E+02 0.0057 25.2 7.7 23 293-315 45-67 (171)
52 PF13779 DUF4175: Domain of un 30.2 92 0.002 35.3 5.6 77 272-351 537-614 (820)
53 PRK14069 exodeoxyribonuclease 30.1 2.3E+02 0.0049 23.6 6.6 60 301-364 9-68 (95)
54 PF05278 PEARLI-4: Arabidopsis 30.0 5.5E+02 0.012 25.3 10.5 78 272-358 151-233 (269)
55 PF12348 CLASP_N: CLASP N term 29.7 4.3E+02 0.0092 23.9 10.7 106 20-130 25-140 (228)
56 PRK07720 fliJ flagellar biosyn 29.3 3.7E+02 0.008 23.1 10.3 35 322-356 68-102 (146)
57 PRK05589 peptide chain release 28.6 5.9E+02 0.013 25.7 10.5 38 293-331 11-48 (325)
58 PF02050 FliJ: Flagellar FliJ 28.5 3E+02 0.0064 21.7 10.0 17 330-346 50-66 (123)
59 PRK11677 hypothetical protein; 28.2 4.2E+02 0.009 23.3 8.3 66 293-358 29-95 (134)
60 PF04156 IncA: IncA protein; 27.6 4.2E+02 0.0092 23.7 8.7 32 293-324 119-150 (191)
61 PF04859 DUF641: Plant protein 26.7 1.5E+02 0.0032 26.1 5.2 56 272-327 51-110 (131)
62 PF10186 Atg14: UV radiation r 26.7 5.5E+02 0.012 24.2 10.4 17 309-325 89-105 (302)
63 PF05983 Med7: MED7 protein; 26.5 4.8E+02 0.01 23.5 9.5 60 292-356 103-162 (162)
64 KOG0982|consensus 26.3 2.6E+02 0.0055 29.5 7.5 63 265-337 306-369 (502)
65 KOG4496|consensus 26.0 1.9E+02 0.004 26.3 5.7 37 326-362 35-71 (194)
66 PRK00977 exodeoxyribonuclease 25.8 3.3E+02 0.007 21.7 6.6 57 301-361 11-67 (80)
67 PRK14066 exodeoxyribonuclease 25.5 3.4E+02 0.0073 21.5 6.6 60 301-364 5-64 (75)
68 PF08317 Spc7: Spc7 kinetochor 25.3 5.8E+02 0.012 25.3 9.9 36 293-328 166-201 (325)
69 PF09766 FimP: Fms-interacting 24.9 2.2E+02 0.0049 28.8 6.9 48 312-359 92-142 (355)
70 PF10267 Tmemb_cc2: Predicted 24.9 3.7E+02 0.0081 27.9 8.5 49 308-356 245-293 (395)
71 PRK00488 pheS phenylalanyl-tRN 24.8 3.8E+02 0.0082 27.2 8.4 46 309-354 39-85 (339)
72 PF10186 Atg14: UV radiation r 24.6 6E+02 0.013 23.9 10.4 47 296-342 62-108 (302)
73 PF03114 BAR: BAR domain; Int 24.5 4.9E+02 0.011 22.9 9.4 56 301-356 169-229 (229)
74 KOG3433|consensus 23.9 3.7E+02 0.0081 25.2 7.4 42 316-358 110-152 (203)
75 PRK14067 exodeoxyribonuclease 23.6 3.2E+02 0.0069 21.9 6.2 55 301-359 8-62 (80)
76 KOG0978|consensus 23.0 4.5E+02 0.0097 29.4 9.1 62 298-359 525-586 (698)
77 cd07636 BAR_GRAF The Bin/Amphi 22.9 2.3E+02 0.0051 26.7 6.1 57 301-359 71-127 (207)
78 KOG2085|consensus 22.9 1.6E+02 0.0034 30.9 5.3 74 34-114 294-367 (457)
79 TIGR01446 DnaD_dom DnaD and ph 22.7 1.4E+02 0.003 22.6 3.9 39 83-123 33-71 (73)
80 cd07609 BAR_SIP3_fungi The Bin 22.5 6.5E+02 0.014 23.8 9.1 61 302-362 65-126 (214)
81 PF10046 BLOC1_2: Biogenesis o 22.3 4.4E+02 0.0095 21.6 9.5 55 307-361 38-98 (99)
82 KOG4005|consensus 22.2 7.2E+02 0.016 24.3 9.2 69 251-322 47-115 (292)
83 PRK00578 prfB peptide chain re 21.9 5.3E+02 0.011 26.5 8.9 37 293-330 49-85 (367)
84 COG3096 MukB Uncharacterized p 21.8 9.2E+02 0.02 27.7 11.0 63 301-363 531-602 (1480)
85 PF10444 Nbl1_Borealin_N: Nbl1 21.7 2.5E+02 0.0055 20.8 5.0 42 309-363 3-44 (59)
86 COG3851 UhpB Signal transducti 21.5 2.3E+02 0.0049 29.6 6.0 36 304-339 269-304 (497)
87 PF08614 ATG16: Autophagy prot 21.3 6.3E+02 0.014 23.0 11.0 60 301-360 120-183 (194)
88 KOG1621|consensus 21.3 1.1E+02 0.0024 31.5 3.8 40 318-357 344-383 (458)
89 PRK06746 peptide chain release 21.1 8.7E+02 0.019 24.6 10.3 40 291-331 9-48 (326)
90 cd07637 BAR_ACAP3 The Bin/Amph 20.8 6.9E+02 0.015 23.3 9.4 59 301-361 65-123 (200)
91 PF02609 Exonuc_VII_S: Exonucl 20.6 3.4E+02 0.0073 19.6 7.0 51 302-356 1-51 (53)
92 TIGR00020 prfB peptide chain r 20.0 6.2E+02 0.013 26.0 8.9 37 293-330 49-85 (364)
93 PRK14064 exodeoxyribonuclease 20.0 4.4E+02 0.0096 20.7 6.6 56 301-360 7-62 (75)
No 1
>KOG2669|consensus
Probab=100.00 E-value=1.7e-50 Score=391.89 Aligned_cols=284 Identities=37% Similarity=0.561 Sum_probs=236.5
Q ss_pred CCCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHH
Q psy15160 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKE 80 (366)
Q Consensus 1 M~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~ 80 (366)
||+||+++|.++|++|++||+||||+|.|||+|++||+.||++|+++|+++..++||+||||||||||||+|+|++|+++
T Consensus 1 m~~fsee~l~~kL~~L~~TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~~~~Kl~llYLaNDVvQnskrk~~ef~~e 80 (325)
T KOG2669|consen 1 MSAFSEEALEKKLAELSNTQESIQTLSLWLIHHKKHARLIVDVWLKELKKSSVNHKLTLLYLANDVVQNSKRKGPEFVDE 80 (325)
T ss_pred CCcccHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccCCCceeeehhhhHHHHHHhhhcCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhhcCcccccccccccccccccccCCCCCC
Q psy15160 81 FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLSESNTEVLYDVDGNVPI 160 (366)
Q Consensus 81 F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (366)
|+++++.+|.+++ ...+.+++++|.||++||++|+||+++++..|+..|+ . +. |++...
T Consensus 81 f~~v~~~a~~~i~-~~~~~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~l~-~--e~--p~~~d~--------------- 139 (325)
T KOG2669|consen 81 FWPVVLKAFAHIV-EETDVKCKKKLGRLINIWEERNVFSPESLVDLEESLG-A--EK--PPPLDE--------------- 139 (325)
T ss_pred HHHHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHhccCCHHHHHHHHHHhc-c--cC--Ccchhh---------------
Confidence 9999999999999 5777888999999999999999999999999999997 1 11 110001
Q ss_pred CccccccccCCCccccccccccccccccccCCccccccccchhchhhccccchhhHHHHHHHhhhhccCcchhhcCCCcc
Q psy15160 161 GYFTFFHIDGKGRRNKYDKKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLSES 240 (366)
Q Consensus 161 ~~~~~~~~~~~~~k~~~~~~~af~hva~~~~dek~~~~l~r~l~Iw~er~vye~~~i~~~~~~~~~~~~~~~~~~k~p~~ 240 (366)
.+.+++..+.+. -.+++.+..+.+ .... ..+...
T Consensus 140 ---------~~~~~~~~~~~k------------------------~~~~~~~~~~~~-----------~~~v--~~~~~~ 173 (325)
T KOG2669|consen 140 ---------AKKLPRGSKQIK------------------------LDEKGSKPGLSS-----------LGEV--HEKIDS 173 (325)
T ss_pred ---------hhccccchHhhh------------------------hhhhccCCCCCC-----------cccc--chhHHh
Confidence 111111111111 001111100000 0000 001112
Q ss_pred hhhHhhhhhhhhcccC-CcHHHHHHhhcCCCCchhhhhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 241 NTEVLYDVDELETSAS-SDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTE 319 (366)
Q Consensus 241 ~~eli~~l~~~e~s~s-Sp~~~r~~ia~lpPEveel~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e 319 (366)
..+++.+.+++++.++ +++.++++|+.+|.+++|.+.+.++.++ ..++.+++.+++++++|.+|+.||+++
T Consensus 174 ~~~l~~a~~s~~~~~~k~~~~~~~~i~~~~~e~~e~~~~~k~~~~--------~~~e~~~k~lee~~~lL~e~~~~L~s~ 245 (325)
T KOG2669|consen 174 SVELVRALQSLENAASKLDAVLEERIARLPQEVEEVSSLEKITLN--------SLIESLAKHLEEEEMLLREVNPRLAAE 245 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567788888888888 8999999999999999999999999999 999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 320 MEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 320 ~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~ 359 (366)
+.+|.++..||++++..|.+.+...+..+++++.+++...
T Consensus 246 ~~~~~~~~~~l~d~l~~q~~~l~~~~~~~~~~k~~l~~~~ 285 (325)
T KOG2669|consen 246 EESRRQLVSMLRDALREQKEELNDEEPQLEEYKEKLDKAQ 285 (325)
T ss_pred chhhhhhHHHHHHHHhhhhccccccccCchhhhhhHHHHh
Confidence 9999999999999999999999999999999999998654
No 2
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=99.95 E-value=1.3e-27 Score=202.44 Aligned_cols=119 Identities=44% Similarity=0.765 Sum_probs=113.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-CcchHHHHHHHHH
Q psy15160 8 ALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEYGKEFGHVLK 86 (366)
Q Consensus 8 ~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f~~~F~~vL~ 86 (366)
+|.++|++|++|+++|++++.||++|.+++..||++|.+++.++++++||++|||+|||+|||+++ ++.|...|.++++
T Consensus 1 ~f~~~L~~L~~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~ 80 (121)
T smart00582 1 AFEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQ 80 (121)
T ss_pred ChHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999987 6789999999999
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHH
Q psy15160 87 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFR 127 (366)
Q Consensus 87 ~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~ 127 (366)
.+|.+++. ..+++.++++.+||++|++|+||++++|..|+
T Consensus 81 ~~~~~~~~-~~~~~~~~ki~kll~iW~~~~iF~~~~i~~L~ 120 (121)
T smart00582 81 DALRDVLG-AANDETKKKIRRLLNIWEERGIFPPSVLRPLR 120 (121)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHhcCCCCCHHHHHHhh
Confidence 99999993 45689999999999999999999999999987
No 3
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=99.91 E-value=3.3e-24 Score=180.35 Aligned_cols=114 Identities=39% Similarity=0.529 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHhccccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHH
Q psy15160 3 GFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFG 82 (366)
Q Consensus 3 ~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~ 82 (366)
.|+...+.++|..+++|+.+|++++.||++|++++..||++|.++++++++.+||++|||+|||+||+++++.. .|.
T Consensus 1 ~~~~~~~l~~L~~~~~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~---~~~ 77 (114)
T cd03562 1 VFDYNALLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKE---FFS 77 (114)
T ss_pred CccHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHH---HHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999998877543 456
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCH
Q psy15160 83 HVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120 (366)
Q Consensus 83 ~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~ 120 (366)
..++++|.+++ ...|++++.++.||+++|++|++|+.
T Consensus 78 ~~~~~~f~~~~-~~~~~~~r~kl~rl~~iW~~~~~f~~ 114 (114)
T cd03562 78 EFLVPLFLDAY-EKVDEKTRKKLERLLNIWEERFVFGS 114 (114)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHccCCCCCCC
Confidence 66688999998 57899999999999999999999973
No 4
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=99.75 E-value=1.2e-18 Score=132.82 Aligned_cols=63 Identities=46% Similarity=0.841 Sum_probs=58.3
Q ss_pred chhHHHHhHHHHHHhhhcCc-chHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCC
Q psy15160 56 KLTLMYLANDVIQNSKKKGP-EYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYD 119 (366)
Q Consensus 56 KL~lLYLaNDVlQnskkkg~-~f~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~ 119 (366)
||++|||||||+|||+++++ +|..+|+++||.+|.+++ ...+++.+++|.||++||++|+||+
T Consensus 1 KL~~lYl~ndI~q~sk~k~~~~f~~~F~~~l~~~~~~~~-~~~~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 1 KLALLYLANDILQNSKRKNPDEFAPAFSPVLPDAFAHAY-KNVDPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHCHHHHHHCCHHHHHHHHC-CCS-HHHHHHHHHHHHHHHHCTSS-
T ss_pred CcceeehHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhCCCCCC
Confidence 79999999999999999987 999999999999999999 5669999999999999999999996
No 5
>KOG0151|consensus
Probab=99.67 E-value=1.6e-16 Score=165.50 Aligned_cols=132 Identities=17% Similarity=0.398 Sum_probs=117.7
Q ss_pred CCCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccchhHHHHHHHHHHh--hcCcccchhHHHHhHHHHHHhhhc--C-c
Q psy15160 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVE--KADDHRKLTLMYLANDVIQNSKKK--G-P 75 (366)
Q Consensus 1 M~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~--ka~~~kKL~lLYLaNDVlQnskkk--g-~ 75 (366)
|+....+.|+..|+.||.-..||..++.||+.|.+.|.+||+|+.+.|. .++..+||+.|||+||||+||..+ + .
T Consensus 428 Ltd~qRdklE~liR~LTpEk~sIg~aM~FalenA~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas 507 (877)
T KOG0151|consen 428 LTDLQRDKLEDLIRGLTPEKSSIGDAMVFALENADAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANAS 507 (877)
T ss_pred cchHHHHHHHHHHHhcCcccchHHHHHHHHHhhhhhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3445678999999999999999999999999999999999999999986 478899999999999999999866 2 4
Q ss_pred chHHHHHHHHHHHHHHhcc---c----CCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q psy15160 76 EYGKEFGHVLKQAFVSVGD---V----HCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNA 132 (366)
Q Consensus 76 ~f~~~F~~vL~~af~~i~~---~----~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~~ 132 (366)
-|+..|++.|+.+|..++. + ...+..+++|..||.+|++|-||+.++|..|++.+..
T Consensus 508 ~YR~~FEa~L~~Ifd~l~~~yr~I~gRIkaE~fkqRV~kVirvWedW~ifpe~~l~~l~~~Flg 571 (877)
T KOG0151|consen 508 AYRKSFEATLEDIFDDLNDLYRSIGGRIKAEAFKQRVMKVIRVWEDWAIFPEDFLIGLQNTFLG 571 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Confidence 7999999999999998763 1 1346779999999999999999999999999998864
No 6
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=99.59 E-value=3e-14 Score=124.88 Aligned_cols=126 Identities=19% Similarity=0.346 Sum_probs=115.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcC---cchHHHHH
Q psy15160 6 QSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKG---PEYGKEFG 82 (366)
Q Consensus 6 e~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg---~~f~~~F~ 82 (366)
.-+|.+.|+.||+|++|||.+..|.|.|+..++.+..|+++.|.+.+.+.|+++||++..+++-|.+.+ ..|+...+
T Consensus 7 r~~F~~~L~~L~aS~qSi~kaa~fAlk~~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l~ 86 (139)
T PF12243_consen 7 RMQFTQLLRRLNASQQSIQKAAQFALKNRDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSMLQ 86 (139)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHccccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999999988654 58999999
Q ss_pred HHHHHHHHHhcccCCC-hHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy15160 83 HVLKQAFVSVGDVHCS-EKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 131 (366)
Q Consensus 83 ~vL~~af~~i~~~~~d-~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~ 131 (366)
..||.++..|++.+.. ....+.+.+||+.|.+|.++++..+.++...|.
T Consensus 87 ~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l~ 136 (139)
T PF12243_consen 87 RDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKKKILDPEEYEEIEASLK 136 (139)
T ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 9999999999963322 367999999999999999999999999998885
No 7
>KOG4368|consensus
Probab=99.12 E-value=2.6e-10 Score=117.46 Aligned_cols=124 Identities=19% Similarity=0.404 Sum_probs=101.4
Q ss_pred HHHHHHHHHhc--cccHHHHHHHHHHHhhhcc---chhHHHHHHHHHHhh--cCcccchhHHHHhHHHHHHhhhcC-cch
Q psy15160 6 QSALISKLEEL--NASQQSIQTLSLWLIHHRK---HHSTIVKTWIDEVEK--ADDHRKLTLMYLANDVIQNSKKKG-PEY 77 (366)
Q Consensus 6 e~~l~~kL~~L--~~Sq~SIqtlS~W~l~h~k---~a~~IV~~w~~~L~k--a~~~kKL~lLYLaNDVlQnskkkg-~~f 77 (366)
-..|...|+-+ ++|.+.|.....||..+.+ |++.|+.+....++. +...-+|++|||+|||+++|.+|. .+.
T Consensus 103 ~~~~~~~l~~~~~~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcqrk~~~~~ 182 (757)
T KOG4368|consen 103 MNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQAREL 182 (757)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555544 6899999999999999987 567777888888875 678899999999999999999885 578
Q ss_pred HHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q psy15160 78 GKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAF 130 (366)
Q Consensus 78 ~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L 130 (366)
..+.+.++..+.+.-. ....+.-.+++.|+|..|+.|++|+..++.+|++..
T Consensus 183 ~~~l~~~v~~~yc~~~-~~~~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~~ 234 (757)
T KOG4368|consen 183 LAALQKVVVPIYCTSF-LAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPA 234 (757)
T ss_pred HHHHHHHhHHHHHhhh-hhhHhHHHHHHHHHHHHHhhcCchhHHHHHHhhhhh
Confidence 8999998877776655 334556678999999999999999999999998643
No 8
>KOG2669|consensus
Probab=98.75 E-value=3.7e-08 Score=96.94 Aligned_cols=158 Identities=22% Similarity=0.344 Sum_probs=116.4
Q ss_pred ccccccccccCCccccccccchhchhhccccchhhHHHHHHHhhhhccCc-chhhcCCCcchhhHhhhhhhhhcccCCcH
Q psy15160 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEP-QTKRRKLSESNTEVLYDVDELETSASSDA 259 (366)
Q Consensus 181 ~af~hva~~~~dek~~~~l~r~l~Iw~er~vye~~~i~~~~~~~~~~~~~-~~~~~k~p~~~~eli~~l~~~e~s~sSp~ 259 (366)
.||.|+. ..++.+|++.++|+++||++|+||.+.++..+..++....+| -..+++.|+.-.++-....+.+.+++++.
T Consensus 87 ~a~~~i~-~~~~~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~l~~e~p~~~d~~~~~~~~~~~~k~~~~~~~~~~~~~~ 165 (325)
T KOG2669|consen 87 KAFAHIV-EETDVKCKKKLGRLINIWEERNVFSPESLVDLEESLGAEKPPPLDEAKKLPRGSKQIKLDEKGSKPGLSSLG 165 (325)
T ss_pred HHHHHHH-HhcchhhhHHHHHHHHHHHHhccCCHHHHHHHHHHhcccCCcchhhhhccccchHhhhhhhhccCCCCCCcc
Confidence 4788887 567889999999999999999999999999999988422222 11123334333333334556666777776
Q ss_pred HHHHHhhcCCCCchhhhhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHH
Q psy15160 260 NIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAM-LKDYIAAQR 338 (366)
Q Consensus 260 ~~r~~ia~lpPEveel~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~-L~~~~~~q~ 338 (366)
.+.++|.+ -++.+++++++++. -..++..+.++.++|-.|+.+...+... |...+..+.
T Consensus 166 ~v~~~~~~---~~~l~~a~~s~~~~-----------------~~k~~~~~~~~i~~~~~e~~e~~~~~k~~~~~~~e~~~ 225 (325)
T KOG2669|consen 166 EVHEKIDS---SVELVRALQSLENA-----------------ASKLDAVLEERIARLPQEVEEVSSLEKITLNSLIESLA 225 (325)
T ss_pred ccchhHHh---HHHHHHHHHHHHHH-----------------HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66442222 13344788888877 4456788889999999999999988876 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15160 339 ELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 339 ~~~~~~~~~l~e~~~~~~~~~ 359 (366)
-.+..++..|.+|...|..-.
T Consensus 226 k~lee~~~lL~e~~~~L~s~~ 246 (325)
T KOG2669|consen 226 KHLEEEEMLLREVNPRLAAEE 246 (325)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 999999999999988876544
No 9
>KOG0132|consensus
Probab=98.56 E-value=1.2e-07 Score=100.81 Aligned_cols=123 Identities=19% Similarity=0.390 Sum_probs=110.1
Q ss_pred HHHHHHHHhccc-----cHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc----Ccch
Q psy15160 7 SALISKLEELNA-----SQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK----GPEY 77 (366)
Q Consensus 7 ~~l~~kL~~L~~-----Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk----g~~f 77 (366)
..|..-|.+|.. |..-|+.+....|.|.+.+..||....++++++++.+||.-||+++.|+-.++.. ...|
T Consensus 5 ~~Fn~eL~SL~DsK~~IS~sKi~~ITkaAikaIk~ykhVVqsVeKfi~kCkpe~Kl~gLYVIDSIVRqsrhq~~~~kd~F 84 (894)
T KOG0132|consen 5 KEFNGELDSLEDSKPGISGSKILKITKAAIKAIKLYKHVVQSVEKFIKKCKPEYKLPGLYVIDSIVRQSRHQFGKEKDVF 84 (894)
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCeeEEehHHHHHHHHhhccccccc
Confidence 467788888864 5668999999999999999999999999999999999999999999999998853 2468
Q ss_pred HHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy15160 78 GKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 131 (366)
Q Consensus 78 ~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~ 131 (366)
..-|..-+-..|..++ .|..+.+.++-|+|+.|..++||-.++|..|.++..
T Consensus 85 ~prf~~n~~~tf~~L~--~c~~edks~iIrvlNlwqkn~VfK~e~IqpLlDm~~ 136 (894)
T KOG0132|consen 85 GPRFSKNFTGTFQNLY--ECPQEDKSDIIRVLNLWQKNNVFKSEIIQPLLDMAD 136 (894)
T ss_pred CCccchhHHHHHHHHH--hcCHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHh
Confidence 8889999999999999 346788999999999999999999999999999887
No 10
>KOG2071|consensus
Probab=97.63 E-value=0.00015 Score=76.31 Aligned_cols=121 Identities=23% Similarity=0.389 Sum_probs=105.4
Q ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHHHH
Q psy15160 7 SALISKLEELN-ASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVL 85 (366)
Q Consensus 7 ~~l~~kL~~L~-~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~vL 85 (366)
--+..-|-.|+ |+..-|.++..-.-+|...|..||..+..++.++++..||..||++..|+-| -|.+|...|...|
T Consensus 7 ~dy~s~ledltfnskp~i~~lt~la~En~~~a~~iv~~iE~hi~kcpp~~kL~~~y~~dsi~kn---vg~py~~~fs~~l 83 (579)
T KOG2071|consen 7 RDYQSSLEDLTFNSKPIINTLTILAEENLPFAKSIVSAIEAHIAKCPPSQKLPVMYLLDSIVKN---VGSPYTTAFSRNL 83 (579)
T ss_pred HHHHHHHHHHhcCCcchhHHhhHhhhhcccccHHHHHHHHHHHhhCCcccccchhhhhHHHHhh---cCCcchhhhhhhH
Confidence 34567788886 9999999999999999999999999999999999999999999999999966 4667999999999
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhh-------hCCCCCHHHHHHHHHHHH
Q psy15160 86 KQAFVSVGDVHCSEKTRSSLSRILNIWE-------ERGVYDKQQIASFRTAFN 131 (366)
Q Consensus 86 ~~af~~i~~~~~d~~~~~kv~RIL~IW~-------eR~Vy~~~~i~~L~~~L~ 131 (366)
...|.+++ ...|+-.+.++.+++..|. ---+|++-....+...+.
T Consensus 84 ~a~f~~~~-~~vd~r~r~~l~~~~~tw~~~~~~~sl~p~~~~~~~~~i~q~~~ 135 (579)
T KOG2071|consen 84 VATFICAF-TKVDERTRTSLFKLRATWDLDPRSNSLDPAWSGVATSKIEQNLK 135 (579)
T ss_pred HHHHHHHH-hhccccccchhHhhHHhhccCCCCCCCCccCCccchhhhhhhhh
Confidence 99999999 7889999999999999998 123456666777776665
No 11
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=92.53 E-value=0.024 Score=42.85 Aligned_cols=32 Identities=34% Similarity=0.700 Sum_probs=26.1
Q ss_pred ccccccccccCCccccccccchhchhhccccch
Q psy15160 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYD 213 (366)
Q Consensus 181 ~af~hva~~~~dek~~~~l~r~l~Iw~er~vye 213 (366)
.+|.|++.. .|+++++.+.|+++||++|++|+
T Consensus 33 ~~~~~~~~~-~~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 33 DAFAHAYKN-VDPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHCCC-S-HHHHHHHHHHHHHHHHCTSS-
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhhCCCCCC
Confidence 478888744 49999999999999999999984
No 12
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=92.19 E-value=1.2 Score=37.09 Aligned_cols=93 Identities=11% Similarity=0.151 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHH--HHHHHHHHhcc--
Q psy15160 19 SQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGH--VLKQAFVSVGD-- 94 (366)
Q Consensus 19 Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~--vL~~af~~i~~-- 94 (366)
+...|..+..-+-.....+..+++.+.+.|...++..++.-|||+.-+++||-. .|...|.. ++..++...+.
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~---~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 17 DWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE---RFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred CHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH---HHHHHHHHhHHHHHHHHhhcccc
Confidence 566677777766555567789999999999988999999999999999999643 44444433 33333332111
Q ss_pred --cCCChHHHHHHHHHHHHhhh
Q psy15160 95 --VHCSEKTRSSLSRILNIWEE 114 (366)
Q Consensus 95 --~~~d~~~~~kv~RIL~IW~e 114 (366)
...+..++.++..++..|.+
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHhC
Confidence 23467889999999999963
No 13
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.85 E-value=2.1 Score=37.21 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Ccch-HHHHHHHHHHHHHHhcccCCC
Q psy15160 21 QSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEY-GKEFGHVLKQAFVSVGDVHCS 98 (366)
Q Consensus 21 ~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f-~~~F~~vL~~af~~i~~~~~d 98 (366)
..|-.++.-+-.....+.+.+..+.+.|...+++..+.-|.|++-++.||-.. ..++ ...|-..|..++..-. .+
T Consensus 24 ~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~---~~ 100 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK---TD 100 (140)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT---TH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC---CC
Confidence 55666666555556678999999999999989999999999999999997533 2222 2234455544444333 22
Q ss_pred hH--HHHHHHHHHHHhhh--CCCCCHHHHHHHHHHHH
Q psy15160 99 EK--TRSSLSRILNIWEE--RGVYDKQQIASFRTAFN 131 (366)
Q Consensus 99 ~~--~~~kv~RIL~IW~e--R~Vy~~~~i~~L~~~L~ 131 (366)
+. +++++..+|..|.+ ++...-..+..+...|.
T Consensus 101 ~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk 137 (140)
T PF00790_consen 101 PETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLK 137 (140)
T ss_dssp HHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHH
Confidence 33 89999999999997 44444555555555543
No 14
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.76 E-value=2 Score=37.15 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-CcchHHHHHHHHHHHHHHhccc-CC
Q psy15160 20 QQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEYGKEFGHVLKQAFVSVGDV-HC 97 (366)
Q Consensus 20 q~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f~~~F~~vL~~af~~i~~~-~~ 97 (366)
-+.|-.+..-+-.....+...++.+.+.|...++...+.-|+|+.-++.||-.. ..++.. ...|.+++..+... ..
T Consensus 18 ~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s--~~fl~~l~~l~~~~~~~ 95 (133)
T cd03561 18 WALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD--KEFLLELVKIAKNSPKY 95 (133)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh--HHHHHHHHHHhCCCCCC
Confidence 345555555454445578999999999999888888999999999999997543 223333 12333444344322 45
Q ss_pred ChHHHHHHHHHHHHhhhC
Q psy15160 98 SEKTRSSLSRILNIWEER 115 (366)
Q Consensus 98 d~~~~~kv~RIL~IW~eR 115 (366)
++.++.++..++.-|.+.
T Consensus 96 ~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 96 DPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 789999999999999873
No 15
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=86.81 E-value=0.19 Score=42.25 Aligned_cols=39 Identities=33% Similarity=0.696 Sum_probs=31.1
Q ss_pred cccccccccCCccccccccchhchhhccccchhhHHHHHH
Q psy15160 182 AFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFR 221 (366)
Q Consensus 182 af~hva~~~~dek~~~~l~r~l~Iw~er~vye~~~i~~~~ 221 (366)
+|.|+.. ..+++.++.+.++++||++|++|.++++..++
T Consensus 82 ~~~~~~~-~~~~~~~~ki~kll~iW~~~~iF~~~~i~~L~ 120 (121)
T smart00582 82 ALRDVLG-AANDETKKKIRRLLNIWEERGIFPPSVLRPLR 120 (121)
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHhcCCCCCHHHHHHhh
Confidence 5555553 23478899999999999999999999987764
No 16
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.25 E-value=6.5 Score=34.03 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Ccch-HHHHHHHHHHHHHHhcccCCC
Q psy15160 21 QSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEY-GKEFGHVLKQAFVSVGDVHCS 98 (366)
Q Consensus 21 ~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f-~~~F~~vL~~af~~i~~~~~d 98 (366)
+.|-.+..-+-.....+...+..+.+.|...++...+.-|-|+..++.||-.+ +.++ ...|-..|..++.. ....
T Consensus 19 ~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~---~~~~ 95 (133)
T smart00288 19 ELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP---KYPL 95 (133)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC---CCCc
Confidence 44444545444444567899999999999888888888899999999997433 2222 22344433333332 2223
Q ss_pred hHHHHHHHHHHHHhhh
Q psy15160 99 EKTRSSLSRILNIWEE 114 (366)
Q Consensus 99 ~~~~~kv~RIL~IW~e 114 (366)
+.+++++..++.-|.+
T Consensus 96 ~~Vk~kil~li~~W~~ 111 (133)
T smart00288 96 PLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4499999999999987
No 17
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.92 E-value=8 Score=34.04 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-CcchH-HHHHHHHHHHHHHhcc-cCCCh
Q psy15160 23 IQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEYG-KEFGHVLKQAFVSVGD-VHCSE 99 (366)
Q Consensus 23 IqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f~-~~F~~vL~~af~~i~~-~~~d~ 99 (366)
|-.+..-+-.....+...+..+.+.|...++...|.-|-|+.-+++||-.. +.++. ..|-.-|..++..-+. ...+.
T Consensus 22 ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~ 101 (139)
T cd03567 22 IQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSE 101 (139)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCH
Confidence 333444343334456788888999998777777888889999999998644 23332 4454445555533221 23568
Q ss_pred HHHHHHHHHHHHhhh
Q psy15160 100 KTRSSLSRILNIWEE 114 (366)
Q Consensus 100 ~~~~kv~RIL~IW~e 114 (366)
.++.++..++..|.+
T Consensus 102 ~Vk~kil~li~~W~~ 116 (139)
T cd03567 102 KVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999996
No 18
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.85 E-value=16 Score=32.17 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Ccch-HHHHHHHHHHHHHHhcccCCCh
Q psy15160 22 SIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEY-GKEFGHVLKQAFVSVGDVHCSE 99 (366)
Q Consensus 22 SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f-~~~F~~vL~~af~~i~~~~~d~ 99 (366)
.|-.+..-+-.....+.+.+..+.+.|...+++..+.-|-|+.-++.||-.+ +.++ .+.|-..|..++.. ..++
T Consensus 24 ~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~----~~~~ 99 (142)
T cd03569 24 SILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT----TKNE 99 (142)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc----cCCH
Confidence 3333555444445577899999999998878888888899999999998543 2222 22344444433332 4578
Q ss_pred HHHHHHHHHHHHhhh
Q psy15160 100 KTRSSLSRILNIWEE 114 (366)
Q Consensus 100 ~~~~kv~RIL~IW~e 114 (366)
.+++++..++.-|.+
T Consensus 100 ~Vk~kil~li~~W~~ 114 (142)
T cd03569 100 EVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999996
No 19
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.74 E-value=17 Score=32.14 Aligned_cols=107 Identities=10% Similarity=0.173 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Ccch-HHHHHHHHHHHHHHhcccCCC
Q psy15160 21 QSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEY-GKEFGHVLKQAFVSVGDVHCS 98 (366)
Q Consensus 21 ~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f-~~~F~~vL~~af~~i~~~~~d 98 (366)
+.|-.+..-+-.....+...+..+.+.|...+++..+.-|-|+.-+++||-.. ..++ .+.|-.. +...+. ...+
T Consensus 19 ~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~e---L~kl~~-~~~~ 94 (144)
T cd03568 19 GLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQE---LKKLIN-DRVH 94 (144)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH---HHHHhc-ccCC
Confidence 34444555455555678899999999998877888888888999999987644 2222 2233333 333333 2257
Q ss_pred hHHHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHH
Q psy15160 99 EKTRSSLSRILNIWEER--GVYDKQQIASFRTAFN 131 (366)
Q Consensus 99 ~~~~~kv~RIL~IW~eR--~Vy~~~~i~~L~~~L~ 131 (366)
..++.++..++.-|.+. +--+-..+..+...|.
T Consensus 95 ~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 95 PTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLK 129 (144)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 89999999999999852 2223334666666664
No 20
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=72.83 E-value=0.69 Score=38.55 Aligned_cols=33 Identities=45% Similarity=0.740 Sum_probs=27.9
Q ss_pred cccccccccccCCccccccccchhchhhccccch
Q psy15160 180 KQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYD 213 (366)
Q Consensus 180 ~~af~hva~~~~dek~~~~l~r~l~Iw~er~vye 213 (366)
..+|.++.. ..|++++..+.|+++||++|++|.
T Consensus 81 ~~~f~~~~~-~~~~~~r~kl~rl~~iW~~~~~f~ 113 (114)
T cd03562 81 VPLFLDAYE-KVDEKTRKKLERLLNIWEERFVFG 113 (114)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHHccCCCCCC
Confidence 346777774 779999999999999999999884
No 21
>KOG4570|consensus
Probab=72.39 E-value=1.2e+02 Score=31.00 Aligned_cols=96 Identities=16% Similarity=0.293 Sum_probs=53.4
Q ss_pred ccccHHHHHHHHHHHhh--hccchhH----HHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHHHH-HHH
Q psy15160 16 LNASQQSIQTLSLWLIH--HRKHHST----IVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVL-KQA 88 (366)
Q Consensus 16 L~~Sq~SIqtlS~W~l~--h~k~a~~----IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~vL-~~a 88 (366)
.+++.+-|-.+--++.. |...+.. -.-+|.+.+.+..+. ..+|++|+-||-+- |.+.|-..| .+-
T Consensus 73 v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq---~~i~~l~npIqYGi-----F~dqf~~c~l~D~ 144 (418)
T KOG4570|consen 73 VISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQ---KAIYTLVNPIQYGI-----FPDQFTFCLLMDS 144 (418)
T ss_pred ccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChH---HHHHHHhCcchhcc-----ccchhhHHHHHHH
Confidence 34455566666555544 4443322 234577777777777 67899999998633 666665433 222
Q ss_pred HHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q psy15160 89 FVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASF 126 (366)
Q Consensus 89 f~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L 126 (366)
|-+- +..+.--+|+-+--.++.|+.+.+.-|
T Consensus 145 flk~-------~n~~~aa~vvt~~~~qe~~~nell~~L 175 (418)
T KOG4570|consen 145 FLKK-------ENYKDAASVVTEVMMQEAFENELLQLL 175 (418)
T ss_pred HHhc-------ccHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2221 223334455555556666666665544
No 22
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=72.22 E-value=14 Score=28.29 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 308 LLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 308 ~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~ 358 (366)
.+++....|..|+.-|.-...|+..|...-+.++.+++..|.++..+|..+
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L 52 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELL 52 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999882222224777777777777777654
No 23
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=71.12 E-value=14 Score=28.50 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy15160 307 DLLTNYNTRLVTEMEDRKRASAMLKDYIAA-QRELLEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 307 ~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~-q~~~~~~~~~~l~e~~~~~~~~ 358 (366)
..+++....|..|+.-|.-+..|+.-|... .+..++.++.+|.++..+|+..
T Consensus 9 ~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~L 61 (72)
T cd00089 9 SRLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELL 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998865 2346788888888888887754
No 24
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=69.84 E-value=67 Score=34.23 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhHHHHHHHHHHHH
Q psy15160 291 DRVAAENLSIQVNEAVDLLT--------------NYNTRLVTEMEDRKRASAMLKDYI 334 (366)
Q Consensus 291 ~~~~~~~l~~~v~ea~~~l~--------------~y~~rL~~e~~~r~~l~~~L~~~~ 334 (366)
+.+..+.+...|+++...|. .|+.||++.+++...+..-+..-+
T Consensus 398 t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~ 455 (507)
T PF05600_consen 398 TAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKR 455 (507)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888888875 699999999999888776555333
No 25
>KOG0993|consensus
Probab=65.35 E-value=24 Score=36.63 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTN--YNTRLVTEMEDRKRASAMLKDY-------IAAQRELLEQAEQRLEVSETE 354 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~--y~~rL~~e~~~r~~l~~~L~~~-------~~~q~~~~~~~~~~l~e~~~~ 354 (366)
+.+++ .|..+-.+|.. |-..|..||+.++-..+-|+.. |.+-+..|..||++++|..+.
T Consensus 117 e~~er---Ev~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~ 184 (542)
T KOG0993|consen 117 EKLER---EVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKA 184 (542)
T ss_pred HHHHH---HHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 55555 78888889988 9999999999988776665543 677888899999999988743
No 26
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=60.13 E-value=85 Score=29.39 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCchhh-hhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy15160 270 PEVSEI-QLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAML 330 (366)
Q Consensus 270 PEveel-~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L 330 (366)
|+++|| +++.+|++.|- .=+.. ...+..++...++-|.+|..|+.+=++=++++
T Consensus 1 ~~t~dL~~~v~dL~~~n~------~L~~e-n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 1 PATSDLLSCVEDLQLNNQ------KLADE-NAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred CchhHHHHHHHHHHHHhH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777 78888885510 11222 23467778888888999988888766655555
No 27
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=57.13 E-value=59 Score=23.94 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15160 308 LLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLK 360 (366)
Q Consensus 308 ~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~ 360 (366)
.+++-...|.-|+.-+.=...|+..|.. .+..+.+|+..|.++..+|..+-.
T Consensus 2 ~l~~L~~ki~~E~~i~~Gae~m~~~~~~-~~k~~~~a~~~l~es~~ki~~L~~ 53 (57)
T smart00742 2 RLEDLRRKIEKELKVKEGAENMRKLTSN-DRKVLSEAQSMLRESNQKLDLLKE 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999988888887765 345899999999999999987643
No 28
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=54.87 E-value=19 Score=29.11 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15160 322 DRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKFDG 364 (366)
Q Consensus 322 ~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~~~ 364 (366)
++..+..-+......-+.+..+.-.-....-.-|.+-++.+|.
T Consensus 58 ~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~d~v~~hi~rLD~ 100 (105)
T PF12998_consen 58 KRRELLKEIQEEYERALELSDEKVALAQQAYDLVDRHIRRLDQ 100 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333333333333333333333344444444443
No 29
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=54.63 E-value=35 Score=27.12 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=36.4
Q ss_pred hhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy15160 276 QLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLE 342 (366)
Q Consensus 276 ~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~ 342 (366)
..|++++++ -+.+.+.++|-. .-|-+|-.---..|+.|+.++++|-..-+.|..
T Consensus 18 ~~l~dmd~k----------vk~mlklieedg---dSfakrAEmyy~kRp~Li~~vee~yr~YrsLAe 71 (74)
T PF07765_consen 18 ENLSDMDEK----------VKAMLKLIEEDG---DSFAKRAEMYYKKRPELISLVEEFYRSYRSLAE 71 (74)
T ss_pred HHHHHHHHH----------HHHHHHHhccCc---chHHHhhHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 466677666 233344444311 226666666678899999999999999888764
No 30
>KOG1087|consensus
Probab=49.62 E-value=66 Score=34.05 Aligned_cols=97 Identities=9% Similarity=0.166 Sum_probs=63.8
Q ss_pred HhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHH--HHHHHHHHHHhcccCCChHHHHHHHH
Q psy15160 30 LIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEF--GHVLKQAFVSVGDVHCSEKTRSSLSR 107 (366)
Q Consensus 30 ~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F--~~vL~~af~~i~~~~~d~~~~~kv~R 107 (366)
|=.-...+.++|..+.+.|....+.-.+-.|+|+.-++.||-. .|-..+ ..+|.+++..+.....+.+++.+|.-
T Consensus 29 IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~---~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~ 105 (470)
T KOG1087|consen 29 INSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGY---SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILE 105 (470)
T ss_pred HhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHH
Confidence 3333456778999999999876665555566666667766643 232222 45777777777632278899999999
Q ss_pred HHHHhhh--C--CCCCHHHHHHHHHH
Q psy15160 108 ILNIWEE--R--GVYDKQQIASFRTA 129 (366)
Q Consensus 108 IL~IW~e--R--~Vy~~~~i~~L~~~ 129 (366)
+|.-|.+ . +.|-+++-.-....
T Consensus 106 LI~~W~~af~~~~~~~~~~~~~y~~l 131 (470)
T KOG1087|consen 106 LIDTWQQAFCGPDGYLPDYYQIYDEL 131 (470)
T ss_pred HHHHHHHHccCCCCcchhHHHHHHHH
Confidence 9999996 2 45555555444433
No 31
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=49.49 E-value=47 Score=30.41 Aligned_cols=78 Identities=14% Similarity=0.264 Sum_probs=62.6
Q ss_pred CCchhh-hhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 270 PEVSEI-QLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRL 348 (366)
Q Consensus 270 PEveel-~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l 348 (366)
...+++ ..|..|.+ .+......|...+..|.+|-..|..-...=+.-...+...+......+.+.+.++
T Consensus 103 ~~~~~~~~~i~~L~~----------~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I 172 (184)
T PF05791_consen 103 KDKEDLKEIIEDLQD----------QIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQI 172 (184)
T ss_dssp T-HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred ccHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHH
Confidence 345566 57777754 3666677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy15160 349 EVSETEIFL 357 (366)
Q Consensus 349 ~e~~~~~~~ 357 (366)
++++.+|..
T Consensus 173 ~~~~~~I~~ 181 (184)
T PF05791_consen 173 ENLNEEIKK 181 (184)
T ss_dssp HHHTGGG-G
T ss_pred HHHHHHHHh
Confidence 999887754
No 32
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=46.99 E-value=86 Score=22.55 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=32.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 318 TEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFL 357 (366)
Q Consensus 318 ~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~ 357 (366)
.+++....-+.-+...+..|+.|.-++.+++++++.++..
T Consensus 3 ~Ql~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E 42 (45)
T PF04394_consen 3 EQLEEKDKQIEELQKLLDQQQQLALQDNKKLEELKAELEE 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677888899999999999999999988865
No 33
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=46.76 E-value=45 Score=27.48 Aligned_cols=43 Identities=23% Similarity=0.494 Sum_probs=35.0
Q ss_pred cCc--chHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCC
Q psy15160 73 KGP--EYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERG 116 (366)
Q Consensus 73 kg~--~f~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~ 116 (366)
+|| .-...|..+||+|+...+ ..+++..+..+.++++.-.++.
T Consensus 30 kgpCt~~~~~lK~~ipeal~t~C-~KCt~kQK~~~~kv~~~l~~~~ 74 (95)
T PF03392_consen 30 KGPCTPEGKELKKVIPEALKTNC-AKCTPKQKENARKVIKFLKKNY 74 (95)
T ss_dssp SSTSHHHHHHHHHHHHHHHHCTT-TTS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccc-cCCCHHHHHHHHHHHHHHHHcC
Confidence 465 578899999999999988 6788999999999998776553
No 34
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=45.78 E-value=99 Score=27.07 Aligned_cols=93 Identities=6% Similarity=0.081 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHhhc-CcccchhHHHHhHHHHHHhhhc-Ccch-HHHHHHH-HHHHHHHhccc
Q psy15160 20 QQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKA-DDHRKLTLMYLANDVIQNSKKK-GPEY-GKEFGHV-LKQAFVSVGDV 95 (366)
Q Consensus 20 q~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka-~~~kKL~lLYLaNDVlQnskkk-g~~f-~~~F~~v-L~~af~~i~~~ 95 (366)
=+.|-.+..-+-.....+...+.++.+.|... ++.--+.-|-|+.-+++||-.+ ..++ .+.|-.- |..++..- .
T Consensus 19 w~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~--~ 96 (141)
T cd03565 19 WGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK--N 96 (141)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc--C
Confidence 34555565655555557789999999999642 3444455688889999887543 2222 2344442 44444311 1
Q ss_pred CCChHHHHHHHHHHHHhhh
Q psy15160 96 HCSEKTRSSLSRILNIWEE 114 (366)
Q Consensus 96 ~~d~~~~~kv~RIL~IW~e 114 (366)
..+..++.++..++.-|.+
T Consensus 97 ~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 97 NPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 2346889999999999986
No 35
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=45.31 E-value=45 Score=28.15 Aligned_cols=89 Identities=11% Similarity=0.177 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHhhhccchhHHHHHHHHHH---hhcCcccchhHHHHhHHHHHHhhhcCc-chHHHHHHHHHHHHHHhcc
Q psy15160 19 SQQSIQTLSLWLIHHRKHHSTIVKTWIDEV---EKADDHRKLTLMYLANDVIQNSKKKGP-EYGKEFGHVLKQAFVSVGD 94 (366)
Q Consensus 19 Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L---~ka~~~kKL~lLYLaNDVlQnskkkg~-~f~~~F~~vL~~af~~i~~ 94 (366)
+..-...++.+..++ ..+..|+++..+.| ......+++--|.|+..+++| |+ .|+..|...+..+-.. ..
T Consensus 20 ~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n----G~~~~~~~~~~~~~~I~~l-~~ 93 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN----GSERFVDELRDHIDIIREL-QD 93 (125)
T ss_dssp -HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH----S-HHHHHHHHHTHHHHHGG-GG
T ss_pred CHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHhhc-ce
Confidence 345566677766555 88899999999999 445667788889999999988 54 6888886654433222 21
Q ss_pred c-----CC-C--hHHHHHHHHHHHHhh
Q psy15160 95 V-----HC-S--EKTRSSLSRILNIWE 113 (366)
Q Consensus 95 ~-----~~-d--~~~~~kv~RIL~IW~ 113 (366)
. .+ + ..++.+...|+++-.
T Consensus 94 f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 94 FQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp ---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred eeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 1 11 1 136777777776643
No 36
>KOG2199|consensus
Probab=43.97 E-value=2.2e+02 Score=29.72 Aligned_cols=110 Identities=12% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCCCCHHHHHHHHHhcc---ccHHHHHHHHHHHhh---hccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcC
Q psy15160 1 MAGFTQSALISKLEELN---ASQQSIQTLSLWLIH---HRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKG 74 (366)
Q Consensus 1 M~~Fse~~l~~kL~~L~---~Sq~SIqtlS~W~l~---h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg 74 (366)
|++|+...|+..|-..+ +|.+.=+-+...|=. ....+...+..+++.|....++--|--|-|...++-||.+.-
T Consensus 1 ~~~~~~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~ 80 (462)
T KOG2199|consen 1 PLFGSANPFEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF 80 (462)
T ss_pred CCCCCcchHHHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH
Confidence 45566666666666554 566665555555543 345678888889999988888888999999999999998641
Q ss_pred ------cchHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCH
Q psy15160 75 ------PEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120 (366)
Q Consensus 75 ------~~f~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~ 120 (366)
..|..+|..++.. ..-++++.+|.-+++-|.+ .|-.
T Consensus 81 r~EVsSr~F~~el~al~~~--------~~h~kV~~k~~~lv~eWse--e~K~ 122 (462)
T KOG2199|consen 81 RLEVSSRDFTTELRALIES--------KAHPKVCEKMRDLVKEWSE--EFKK 122 (462)
T ss_pred HHHHhhhhHHHHHHHHHhh--------cccHHHHHHHHHHHHHHHH--Hhcc
Confidence 2566666554432 2347889999999999999 5543
No 37
>PLN03223 Polycystin cation channel protein; Provisional
Probab=43.72 E-value=92 Score=37.23 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-----HhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q psy15160 287 TGQPDRVAAENLSIQVNEAVDLLTNYNTRL-----VTE-----MEDRKRASAMLKDYIAAQRELLEQA------EQRLEV 350 (366)
Q Consensus 287 ~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL-----~~e-----~~~r~~l~~~L~~~~~~q~~~~~~~------~~~l~e 350 (366)
.|.++-.+...-...+++|..+|-+-++-. +.| +.++.+|.+.|++++..|++++... ++||-|
T Consensus 1534 ~~~~~~~~~~at~~ei~~aa~~~~~~~g~~p~~~~~~e~~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~ 1613 (1634)
T PLN03223 1534 VGKGKKKETLATADEIDQAAHMLMDQVGQVPDDEDDDEDGDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAE 1613 (1634)
T ss_pred cCCCccccccccHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHH
Confidence 355554555555667899988887665432 233 6678899999999999999987654 467778
Q ss_pred HHHHHHHHHhhcCC
Q psy15160 351 SETEIFLFLKKFDG 364 (366)
Q Consensus 351 ~~~~~~~~~~~~~~ 364 (366)
.+.+|--+++|.=|
T Consensus 1614 ~q~kl~~l~~k~~~ 1627 (1634)
T PLN03223 1614 RQSRLSQLENKILG 1627 (1634)
T ss_pred HHHHHHHHHhhhcc
Confidence 88888887776544
No 38
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=42.47 E-value=54 Score=33.75 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHHHHHHHHHHhcccCCCh
Q psy15160 20 QQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSE 99 (366)
Q Consensus 20 q~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~vL~~af~~i~~~~~d~ 99 (366)
++=+.-+..++-....-+..++....++-=.+++.|.+.||..+.+|+...- -..|..+++.+|..++ .+.++
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~------~~~f~~i~~~lf~~la-~ci~S 308 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLP------PEEFQKIMVPLFKRLA-KCISS 308 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHH-HHhCC
Confidence 3444445556655666666777766666667889999999999999996411 2578999999999998 55667
Q ss_pred HHHHHHHHHHHHhhhCCC
Q psy15160 100 KTRSSLSRILNIWEERGV 117 (366)
Q Consensus 100 ~~~~kv~RIL~IW~eR~V 117 (366)
..-+-..|.+.+|....+
T Consensus 309 ~h~qVAErAl~~w~n~~~ 326 (409)
T PF01603_consen 309 PHFQVAERALYFWNNEYF 326 (409)
T ss_dssp SSHHHHHHHHGGGGSHHH
T ss_pred CCHHHHHHHHHHHCCHHH
Confidence 778889999999987553
No 39
>KOG4025|consensus
Probab=40.14 E-value=1.3e+02 Score=27.70 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhc
Q psy15160 306 VDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLE-----------QAEQRLEVSETEIFLFLKKF 362 (366)
Q Consensus 306 ~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~-----------~~~~~l~e~~~~~~~~~~~~ 362 (366)
.--|..-..|.-+||.||....+++++--.+.+.||+ +++.-+|.-+++.-.+++.|
T Consensus 102 a~aLk~iLSriPdEinDR~~FLeTIK~IASaIKkLLd~vN~v~~~~p~t~~~AvE~rKkEFVkYSK~F 169 (207)
T KOG4025|consen 102 AIALKRILSRIPDEINDRHAFLETIKLIASAIKKLLDAVNAVYRIVPLTAQPAVEKRKKEFVKYSKRF 169 (207)
T ss_pred HHHHHHHHHhCcHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 3345566788999999999999999999999999986 34555666666665566555
No 40
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.61 E-value=1.5e+02 Score=23.52 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKFDG 364 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~~~ 364 (366)
-|++|..-|++-+.+|... --.|-..+.-|.... .++.+++++|++.+.+|...+..=+|
T Consensus 7 sfEeal~~Le~IV~~LE~g---dl~Leesl~lyeeG~-~L~k~C~~~L~~ae~kv~~l~~~~~~ 66 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNE---TVSLEESLDLYQRGM-KLSAACDTTLKNAEKKVNDLIKEEAE 66 (76)
T ss_pred CHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4788888888888777654 345677777777774 68889999999999999888876554
No 41
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.63 E-value=2.3e+02 Score=24.41 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAML-KDYIAAQRELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L-~~~~~~q~~~~~~~~~~l~e~~~~~~~~~ 359 (366)
....+|-.+.+++-.-|++|-..+.+-...--.|+..| .+|....+++-..|+.-+.+...+-..|.
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll~~~~~~~~pf~ 92 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELLPDEPEQDLPFS 92 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhccchh
Confidence 33457778999999999999999999777766666555 55999999998888887776555443343
No 42
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=37.46 E-value=1.6e+02 Score=22.59 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15160 302 VNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKFD 363 (366)
Q Consensus 302 v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~~ 363 (366)
+++|..-|++-+..|... --.|-.++.-|.... .++..++++|+..+.++......-+
T Consensus 3 fEe~l~~Le~Iv~~LE~~---~l~Leesl~lyeeG~-~L~k~c~~~L~~ae~kv~~l~~~~~ 60 (67)
T TIGR01280 3 FEEALSELEQIVQKLESG---DLALEEALNLFERGM-ALARRCEKKLAQAEQRVRKLLKEDD 60 (67)
T ss_pred HHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 677777777777766543 335667777777664 5788889999999988888775433
No 43
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=35.94 E-value=1.2e+02 Score=27.01 Aligned_cols=89 Identities=12% Similarity=0.230 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHH-HhhcCcccc------hhHHHHhHHHHHHhhhcCcchHH----------HHHH
Q psy15160 21 QSIQTLSLWLIHHRKHHSTIVKTWIDE-VEKADDHRK------LTLMYLANDVIQNSKKKGPEYGK----------EFGH 83 (366)
Q Consensus 21 ~SIqtlS~W~l~h~k~a~~IV~~w~~~-L~ka~~~kK------L~lLYLaNDVlQnskkkg~~f~~----------~F~~ 83 (366)
..||.+..+|-.+..-.--+-+.+.+. ..+.+...+ =.+|+++|.|+.. .|+|.. -|-.
T Consensus 3 p~vqefk~lIe~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~----AP~~~~~~~~~glvG~P~na 78 (141)
T PF12588_consen 3 PVVQEFKDLIESDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTT----APEFSDANEPVGLVGFPMNA 78 (141)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhh----CCcccccCCCCCccccChHH
Confidence 457777777765533332222333330 011222222 3689999999975 444433 1222
Q ss_pred HHHHHHHHhcc--cCCChHHHHHHHHHHHHhh
Q psy15160 84 VLKQAFVSVGD--VHCSEKTRSSLSRILNIWE 113 (366)
Q Consensus 84 vL~~af~~i~~--~~~d~~~~~kv~RIL~IW~ 113 (366)
+|-.....-+- .=.++.+-.++.+||+.|.
T Consensus 79 iLdwpM~T~sG~a~F~~p~vN~~lK~ILn~W~ 110 (141)
T PF12588_consen 79 ILDWPMGTPSGYAFFLDPDVNAQLKKILNEWG 110 (141)
T ss_pred HHHhhccChHHHHHHcCHHHHHHHHHHHHHHH
Confidence 22222111000 0127899999999999996
No 44
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=34.88 E-value=3.1e+02 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=13.5
Q ss_pred chhh-hhhHhhhCCCCCCCCcH
Q psy15160 272 VSEI-QLLSKVQGKNITGQPDR 292 (366)
Q Consensus 272 veel-~~L~~Led~~~~~~~~~ 292 (366)
..|. ..|+.+++++++++...
T Consensus 129 l~ea~~mL~emr~r~f~~~~~~ 150 (264)
T PF06008_consen 129 LAEAQRMLEEMRKRDFTPQRQN 150 (264)
T ss_pred HHHHHHHHHHHHhccchhHHHH
Confidence 4445 47788877776666544
No 45
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=34.88 E-value=79 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.481 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 329 MLKDYIAAQRELLEQAEQRLEVSE 352 (366)
Q Consensus 329 ~L~~~~~~q~~~~~~~~~~l~e~~ 352 (366)
+=.+|+..+..+|+++++.|.|.+
T Consensus 55 lD~~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 55 LDEPFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 446899999999999999999865
No 46
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=33.41 E-value=3.3e+02 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15160 298 LSIQVNEAVDLLTNYNTRL 316 (366)
Q Consensus 298 l~~~v~ea~~~l~~y~~rL 316 (366)
+...+.+....|.++..+|
T Consensus 141 ~~~~~~~~~~~l~~~~~~l 159 (319)
T PF02601_consen 141 IVPDRRELLQRLDELRQRL 159 (319)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 47
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.28 E-value=2.4e+02 Score=22.29 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLK 360 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~ 360 (366)
.+++|..-|++-+.+|.. .--.|-..+..|.... .++..+.++|+..+.+|...+.
T Consensus 6 sfEeal~~LE~Iv~~LE~---~~l~Leesl~lyeeG~-~L~k~C~~~L~~aE~ki~~l~~ 61 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQ---GDVPLEEAISYFKEGM-ELSKLCDEKLKNVQEQMAVILG 61 (76)
T ss_pred CHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 378888889888888864 3456777888887775 5888899999999999887664
No 48
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=31.79 E-value=3.4e+02 Score=27.00 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 290 PDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSET 353 (366)
Q Consensus 290 ~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~ 353 (366)
.|.+.|..+++.+ +...++|...+.... +..-..-|..=+..-+.-|..+|.+|.+++.
T Consensus 140 ~dP~~A~~ian~l---~~~~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 140 FDAEEAQKINQRL---LKEGERLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred cCHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666644433 223455666552222 3333444444444444444445555544443
No 49
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.78 E-value=3.5e+02 Score=24.99 Aligned_cols=51 Identities=27% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 308 LLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 308 ~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~ 358 (366)
+-.+|...+..+.+..+.-.+....++..-+....+.+.+|++++.+|...
T Consensus 122 ~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 122 LGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555666666677766666543
No 50
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=31.60 E-value=37 Score=24.40 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy15160 288 GQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAM 329 (366)
Q Consensus 288 ~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~ 329 (366)
|++=......|...-..|..++.+||..-....+.|..|.+-
T Consensus 7 G~~Y~~~d~el~~~r~~a~~l~~~~N~~~~~d~~~r~~llk~ 48 (55)
T PF12464_consen 7 GELYDASDPELQEIRARAKRLLQRYNQTPPEDPEERQELLKE 48 (55)
T ss_dssp TS-EETTSHHHHHHHHHHHHHHHHHHHSHTTTHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 333333455677778889999999998776666677666543
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=30.22 E-value=2.6e+02 Score=25.25 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTR 315 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~r 315 (366)
..+...+..||+|+..|.+...|
T Consensus 45 ~~a~~~s~~iN~AY~~L~dp~~R 67 (171)
T PRK05014 45 LLAVQQAATINDAYQTLKHPLKR 67 (171)
T ss_pred HHHHHHHHHHHHHHHHHCChhHH
Confidence 34566777888888888765544
No 52
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=30.18 E-value=92 Score=35.27 Aligned_cols=77 Identities=13% Similarity=0.264 Sum_probs=54.3
Q ss_pred chhh-hhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 272 VSEI-QLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEV 350 (366)
Q Consensus 272 veel-~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e 350 (366)
..|| .+|++|++- .-+++.++|..++.++++-..=|..=... .....+..+-++-|.+.+..|++|+.++-..+++
T Consensus 537 ~~dL~~mmd~ie~l--a~~G~~~~A~q~L~qlq~mmenmq~~~~q-~~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~q~ 613 (820)
T PF13779_consen 537 QQDLQRMMDRIEEL--ARSGRMDEARQLLEQLQQMMENMQNAQPQ-QQQQQEMQQAMEELGDLLRRQQQLMDETFRQLQE 613 (820)
T ss_pred HHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHhccccCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677 477777765 45577788888777666654444322222 1455667788999999999999999999888776
Q ss_pred H
Q psy15160 351 S 351 (366)
Q Consensus 351 ~ 351 (366)
-
T Consensus 614 q 614 (820)
T PF13779_consen 614 Q 614 (820)
T ss_pred h
Confidence 4
No 53
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.13 E-value=2.3e+02 Score=23.62 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKFDG 364 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~~~ 364 (366)
-+++|..-|++-+.+|... --.|-..+.-|-.. -+++..|+.+|++.+.+|...+..-+|
T Consensus 9 sFEeal~~LEeIV~~LEsg---dl~LEesl~lyeeG-v~L~k~C~~~L~~AE~kV~~L~~~~~~ 68 (95)
T PRK14069 9 SFEDALRELEQIAEKLERQ---DFSLEESLKAYERG-MELKKICSGILDDAEGKIEALTKDESG 68 (95)
T ss_pred CHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3788888888888887654 33566667777666 467888899999988888877754433
No 54
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.96 E-value=5.5e+02 Score=25.32 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=43.1
Q ss_pred chhh-hhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 272 VSEI-QLLSKVQGKNITGQPDRVAAENLSIQVNEAVDL---LTNYNTRL-VTEMEDRKRASAMLKDYIAAQRELLEQAEQ 346 (366)
Q Consensus 272 veel-~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~---l~~y~~rL-~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~ 346 (366)
+.++ ..|.+|++.|| ...-|-..++|++.. ...|-.+. ..|..+|+ +...+.=+..+.+-|.++|+
T Consensus 151 l~e~~~~l~DLesa~v-------kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~--l~~~~~ELe~~~EeL~~~Ek 221 (269)
T PF05278_consen 151 LKEMIATLKDLESAKV-------KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRK--LELKKEELEELEEELKQKEK 221 (269)
T ss_pred HHHHHHHHHHHHHcCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4555 58888887733 222333344444444 44444443 22333333 44444455566777888888
Q ss_pred HHHHHHHHHHHH
Q psy15160 347 RLEVSETEIFLF 358 (366)
Q Consensus 347 ~l~e~~~~~~~~ 358 (366)
++.|.+.++...
T Consensus 222 e~~e~~~~i~e~ 233 (269)
T PF05278_consen 222 EVKEIKERITEM 233 (269)
T ss_pred HHHHHHHHHHHH
Confidence 888887777543
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=29.73 E-value=4.3e+02 Score=23.94 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhh--ccchhHHHHHHH---HHHhhcCcccch----hHHHHhHHHHHHhhhcCcchHHHHHHHHHHHHH
Q psy15160 20 QQSIQTLSLWLIHH--RKHHSTIVKTWI---DEVEKADDHRKL----TLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFV 90 (366)
Q Consensus 20 q~SIqtlS~W~l~h--~k~a~~IV~~w~---~~L~ka~~~kKL----~lLYLaNDVlQnskkkg~~f~~~F~~vL~~af~ 90 (366)
.+.++.+...+..| ......++.+.. ..+.+.-.+.+- +-+-++.++..+.+ ..|...+...+|.++.
T Consensus 25 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~---~~~~~~~~~~l~~Ll~ 101 (228)
T PF12348_consen 25 VEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG---SHFEPYADILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHHH
Confidence 67889999999998 445566666665 333332222222 22344555554433 3466667778888887
Q ss_pred HhcccCCChHHHHHHHHHHHHhhhCCCCCHHH-HHHHHHHH
Q psy15160 91 SVGDVHCSEKTRSSLSRILNIWEERGVYDKQQ-IASFRTAF 130 (366)
Q Consensus 91 ~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~-i~~L~~~L 130 (366)
.+.. ...-++.....+|..+-+.--|.+.+ +..+...+
T Consensus 102 ~~~~--~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~ 140 (228)
T PF12348_consen 102 KLGD--SKKFIREAANNALDAIIESCSYSPKILLEILSQGL 140 (228)
T ss_dssp GGG-----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHT
T ss_pred HHcc--ccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 7772 23567888888777666654445555 44444333
No 56
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=29.34 E-value=3.7e+02 Score=23.12 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 322 DRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIF 356 (366)
Q Consensus 322 ~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~ 356 (366)
.-..-...|...|..|+..+.+++..++..+..+.
T Consensus 68 ~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ 102 (146)
T PRK07720 68 HYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLT 102 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567777788888888888888877766553
No 57
>PRK05589 peptide chain release factor 2; Provisional
Probab=28.55 E-value=5.9e+02 Score=25.74 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLK 331 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~ 331 (366)
+.+..+++.....-..++.|.. |....++-+.+.+|+.
T Consensus 11 ~~~~~~~ke~~~l~~~v~~~~~-~~~~~~~~~~~~~l~~ 48 (325)
T PRK05589 11 KEAQEITSEEKYLKDKLDKYNH-LRNRIEDIEVLCEMMS 48 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 5566666666665555555544 4444555555555553
No 58
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=28.48 E-value=3e+02 Score=21.75 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15160 330 LKDYIAAQRELLEQAEQ 346 (366)
Q Consensus 330 L~~~~~~q~~~~~~~~~ 346 (366)
...|+......+.+.+.
T Consensus 50 ~~~~~~~l~~~i~~~~~ 66 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQ 66 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 59
>PRK11677 hypothetical protein; Provisional
Probab=28.15 E-value=4.2e+02 Score=23.34 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRAS-AMLKDYIAAQRELLEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~-~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~ 358 (366)
.....|-++++++-.-|++|...|.+-..+=-.|+ +|-.+|...++++-..+..-|.+..++-.-|
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~Llp~~~~q~~pf 95 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSELLPNLPAQDNPF 95 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchh
Confidence 45567778999999999999999999888776665 5667888888888888887777665443333
No 60
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=27.58 E-value=4.2e+02 Score=23.65 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRK 324 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~ 324 (366)
.....+.+.+.+-...+.+-...+.+|+.+-.
T Consensus 119 ~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 119 QELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566666666666666666666555
No 61
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=26.75 E-value=1.5e+02 Score=26.08 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=29.3
Q ss_pred chhhhhhHhhhCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHH
Q psy15160 272 VSEIQLLSKVQGKNITGQPDRV-AAENLSIQVNEAVDLLTNY---NTRLVTEMEDRKRAS 327 (366)
Q Consensus 272 veel~~L~~Led~~~~~~~~~~-~~~~l~~~v~ea~~~l~~y---~~rL~~e~~~r~~l~ 327 (366)
|+||..|.+|++.=.-.++++. ....+...+.+=..++..| .++|.+|+..+..=+
T Consensus 51 VsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei 110 (131)
T PF04859_consen 51 VSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEI 110 (131)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899888888754111111211 1222444555555565555 455556666554433
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.69 E-value=5.5e+02 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhHHH
Q psy15160 309 LTNYNTRLVTEMEDRKR 325 (366)
Q Consensus 309 l~~y~~rL~~e~~~r~~ 325 (366)
..+....+..++..|+.
T Consensus 89 ~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 89 KRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444443
No 63
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=26.49 E-value=4.8e+02 Score=23.46 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 292 RVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIF 356 (366)
Q Consensus 292 ~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~ 356 (366)
...-+++...+.-.-.+|++|-- ..-|..|..||+.=+..=|+.++.-++.+++.++.|+
T Consensus 103 ~~ki~~i~~L~~NmhhllNeyRP-----hQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~le 162 (162)
T PF05983_consen 103 ERKIEDIRLLFINMHHLLNEYRP-----HQARETLIMMMEEQLEEKREEIEEIRKVCEKAREVLE 162 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35677788888999999999854 4556788888888888878888887887777777663
No 64
>KOG0982|consensus
Probab=26.29 E-value=2.6e+02 Score=29.52 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=44.3
Q ss_pred hhcCCCCchhh-hhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy15160 265 IAKLPPEVSEI-QLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQ 337 (366)
Q Consensus 265 ia~lpPEveel-~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q 337 (366)
+-.|.-|..++ +++-+|+ .-+++|+..-..-..+|+....+|..|++.|..++..|+.|+...
T Consensus 306 ~qqleeentelRs~~arlk----------sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLK----------SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666 3444443 224445555555678888999999999999999999999987654
No 65
>KOG4496|consensus
Probab=26.00 E-value=1.9e+02 Score=26.27 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15160 326 ASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKF 362 (366)
Q Consensus 326 l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~ 362 (366)
+++||.+|-.---+.|+.++++++...++|...=.+|
T Consensus 35 ~tefLN~F~n~cEd~Lad~elridq~d~kLnildaKL 71 (194)
T KOG4496|consen 35 MTEFLNNFGNKCEDILADAELRIDQADRKLNILDAKL 71 (194)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777889999999998888776554444
No 66
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.78 E-value=3.3e+02 Score=21.70 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKK 361 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~ 361 (366)
-+++|..-|++-+..|... --.|-..+.-|.... .++..++++|+..+.+|...+..
T Consensus 11 sfEea~~~LEeIv~~LE~~---~l~Lees~~lyeeg~-~L~k~C~~~L~~ae~ki~~l~~~ 67 (80)
T PRK00977 11 SFEEALAELEEIVTRLESG---DLPLEESLAAFERGV-ALARQCQKKLQQAEQRVEKLLDE 67 (80)
T ss_pred CHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3777777787777776643 234556666666663 57788888888888888777654
No 67
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.51 E-value=3.4e+02 Score=21.46 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKFDG 364 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~~~ 364 (366)
.|++|..-|++-+.+|... --.|-..+.-|-... .++.++.++|+..+.+|...+..-+|
T Consensus 5 ~fEeal~~LE~IV~~LE~g---~l~Leesl~lyeeG~-~L~k~C~~~L~~ae~kv~~l~~~~~~ 64 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGG---ELSLDDSLKAFEEGV-KHAAFCSKKLDEAERRVEVLLKQKDG 64 (75)
T ss_pred cHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3888888888888887643 234666777776664 57888999999999998887754443
No 68
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.34 E-value=5.8e+02 Score=25.31 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASA 328 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~ 328 (366)
+........+++....|.++...|..|+..-+.+..
T Consensus 166 ~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 166 AKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344445667777777777777777766666554
No 69
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=24.85 E-value=2.2e+02 Score=28.77 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy15160 312 YNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAE---QRLEVSETEIFLFL 359 (366)
Q Consensus 312 y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~---~~l~e~~~~~~~~~ 359 (366)
...||.-|+..|+.|...+......-+.++...+ .+|......|..++
T Consensus 92 ml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 92 MLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLK 142 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3579999999999999888887776666655433 33444444444443
No 70
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.85 E-value=3.7e+02 Score=27.90 Aligned_cols=49 Identities=16% Similarity=0.084 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 308 LLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIF 356 (366)
Q Consensus 308 ~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~ 356 (366)
-+.-|+..|..|=--..+|.+.|+|+++.++.-+...++.|....+|+.
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456777888888778899999999999999998888888877666664
No 71
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=24.80 E-value=3.8e+02 Score=27.24 Aligned_cols=46 Identities=28% Similarity=0.350 Sum_probs=32.9
Q ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 309 LTNYNTRLVT-EMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETE 354 (366)
Q Consensus 309 l~~y~~rL~~-e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~ 354 (366)
|..+.+.|.. -.++|+.+-+.++.+.+.-.+++.+.++.|++-...
T Consensus 39 l~~~~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~ 85 (339)
T PRK00488 39 LTELLKGLGKLPPEERKEAGALINELKQAIEAALEERKEELEAAALN 85 (339)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 447899999999999999899998888888765543
No 72
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.63 E-value=6e+02 Score=23.95 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy15160 296 ENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLE 342 (366)
Q Consensus 296 ~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~ 342 (366)
+.-.....+.+..|.+...++..++++++.-...++.-+...+..+.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556677778888888888888888888888888777777666
No 73
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=24.51 E-value=4.9e+02 Score=22.94 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 301 QVNEAVDLLTNYNTRLVTEM----EDRKRAS-AMLKDYIAAQRELLEQAEQRLEVSETEIF 356 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~----~~r~~l~-~~L~~~~~~q~~~~~~~~~~l~e~~~~~~ 356 (366)
.+++|....+..|.-|..+| ..|.... ..|..|+..|.....+.-+.|+++...|+
T Consensus 169 ~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 169 KLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45666666666666666655 3455555 89999999999999999999999887663
No 74
>KOG3433|consensus
Probab=23.92 E-value=3.7e+02 Score=25.17 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=17.0
Q ss_pred HHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 316 LVTEMEDRK-RASAMLKDYIAAQRELLEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 316 L~~e~~~r~-~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~ 358 (366)
...+.++|. .|+.-|..... +.+.+..--.++++|.-+++.+
T Consensus 110 ~~e~tEer~~el~kklnslkk-~~e~lr~el~k~~e~dpqv~~k 152 (203)
T KOG3433|consen 110 GREETEERTDELTKKLNSLKK-ILESLRWELAKIQETDPQVFEK 152 (203)
T ss_pred hhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCHHHHHH
Confidence 344455555 44444433333 3333333333444444444433
No 75
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.57 E-value=3.2e+02 Score=21.89 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~ 359 (366)
.|++|..-|++-+.+|... --.|-..+.-|.... .|+..++++|+..+.+|....
T Consensus 8 sfEeal~~LEeIV~~LE~~---~l~Lees~~lyeeG~-~L~k~C~~~L~~ae~kI~~l~ 62 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGG---DLPLEESVALYKEGL-GLARACREQLAKARNEIRLFT 62 (80)
T ss_pred CHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888877643 335667777777664 578888888888888887654
No 76
>KOG0978|consensus
Probab=23.03 E-value=4.5e+02 Score=29.39 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 298 LSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 298 l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~ 359 (366)
-...+++=...|..+.++|.+|..-+.+.+.|+..-...-...+......++.++.+|..+.
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~ 586 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ 586 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999999999999999999999999999988888888888888888877653
No 77
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=22.95 E-value=2.3e+02 Score=26.71 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~ 359 (366)
.+-.+..-+++|-.+|-.+.. ..|...|..|...+-.....+.++-+-..++...-+
T Consensus 71 kF~~~L~ei~~~r~~L~~qa~--~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al 127 (207)
T cd07636 71 EFAAVLRNLEDERTRMIENAS--EVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVL 127 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHH
Confidence 355556666667666666654 245566777766666666666666555555554443
No 78
>KOG2085|consensus
Probab=22.93 E-value=1.6e+02 Score=30.92 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=62.3
Q ss_pred ccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhh
Q psy15160 34 RKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWE 113 (366)
Q Consensus 34 ~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~ 113 (366)
.+-++.++...+++.-++...+.+.||--+-+|+.- .=-.+|+.....+|..++ .+.++..-+-..|.|-.|.
T Consensus 294 ~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~------iep~eFqk~~~PLf~qia-~c~sS~HFQVAEraL~~wn 366 (457)
T KOG2085|consen 294 PKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEV------IEPSEFQKIMVPLFRQIA-RCVSSPHFQVAERALYLWN 366 (457)
T ss_pred ccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHh------cCHHHHHHHhHHHHHHHH-HHcCChhHHHHHHHHHHHh
Confidence 345677888888888889999999999999999964 224678999999999999 6778889999999999996
Q ss_pred h
Q psy15160 114 E 114 (366)
Q Consensus 114 e 114 (366)
-
T Consensus 367 N 367 (457)
T KOG2085|consen 367 N 367 (457)
T ss_pred h
Confidence 4
No 79
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=22.72 E-value=1.4e+02 Score=22.55 Aligned_cols=39 Identities=18% Similarity=0.398 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHH
Q psy15160 83 HVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQI 123 (366)
Q Consensus 83 ~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i 123 (366)
.++-.++..+... .....+=|.+||+-|.+.||.+.+-+
T Consensus 33 evI~~ai~~a~~~--~~~~~~Yi~~Il~~W~~~gi~T~e~~ 71 (73)
T TIGR01446 33 ELIKEALKEAVSN--NKANYKYIDAILNNWKNNGIKTVEDV 71 (73)
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 4666666665521 22235789999999999999887654
No 80
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.49 E-value=6.5e+02 Score=23.76 Aligned_cols=61 Identities=8% Similarity=0.189 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15160 302 VNEAVDLLTNYNTRLVTEME-DRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKF 362 (366)
Q Consensus 302 v~ea~~~l~~y~~rL~~e~~-~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~ 362 (366)
+......|.++...+-..+. .-..+.+-|+.|+..+-.-..+..++.+.++++.+..|.++
T Consensus 65 l~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~ 126 (214)
T cd07609 65 LKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARY 126 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666665 34447888999999999999999999999999999888765
No 81
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.28 E-value=4.4e+02 Score=21.55 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15160 307 DLLTNYNTRLVTEMEDRKRASAMLKDYI------AAQRELLEQAEQRLEVSETEIFLFLKK 361 (366)
Q Consensus 307 ~~l~~y~~rL~~e~~~r~~l~~~L~~~~------~~q~~~~~~~~~~l~e~~~~~~~~~~~ 361 (366)
.-+.+-...|...+++-.+...-|..|+ ..|=.-|.++-.+|++|-.+|+.-++.
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555555555555555555444 345556777888888888888876654
No 82
>KOG4005|consensus
Probab=22.17 E-value=7.2e+02 Score=24.29 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=47.2
Q ss_pred hhcccCCcHHHHHHhhcCCCCchhhhhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15160 251 LETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMED 322 (366)
Q Consensus 251 ~e~s~sSp~~~r~~ia~lpPEveel~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~ 322 (366)
....+|.|+--|+|+..|-|| |--.=.+|+|. +..|..|+.-+.=+..++.-+..|.|-|.+|..|-+-
T Consensus 47 ~~~aas~~~rKr~RL~HLS~E--EK~~RrKLKNR-VAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~ 115 (292)
T KOG4005|consen 47 DNMAASQPKRKRRRLDHLSWE--EKVQRRKLKNR-VAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDS 115 (292)
T ss_pred CcccccchHHHHHhhcccCHH--HHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888888775 22233567777 4445555555555667888888899999999888654
No 83
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=21.88 E-value=5.3e+02 Score=26.48 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAML 330 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L 330 (366)
..+..+++...+...+++.|.. |....++-+.+.+||
T Consensus 49 ~~~~~l~ke~~~L~~iv~~~~~-l~~~~~e~~~~~ell 85 (367)
T PRK00578 49 ERAQKVTKELSSLKAKLDTLEE-LRQRLDDLEELLELA 85 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444455555555555555544 333344444444444
No 84
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.76 E-value=9.2e+02 Score=27.68 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15160 301 QVNEAVDLLTNYNTR---------LVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKFD 363 (366)
Q Consensus 301 ~v~ea~~~l~~y~~r---------L~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~~ 363 (366)
+-..|..+|++||+| |.++-.+-..|.+-|..-...+++--.+..++.++.+..+..+-.+-|
T Consensus 531 qQqsa~~Ll~~f~kr~~~~l~ae~lE~~~~e~eal~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~AP 602 (1480)
T COG3096 531 QQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAP 602 (1480)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445677788888876 334444455566666666677777767777777777777776655543
No 85
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=21.73 E-value=2.5e+02 Score=20.78 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15160 309 LTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKFD 363 (366)
Q Consensus 309 l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~~ 363 (366)
++.|...++.|+++|- +++-++++..++..+..+...+.++|
T Consensus 3 ~~~~l~~fd~Ev~~r~-------------~~lr~~~~~~~~~~~~~~~~~l~riP 44 (59)
T PF10444_consen 3 KQAFLQNFDLEVEERI-------------RRLRAQYENLLQSLRNRLEMELLRIP 44 (59)
T ss_dssp STTHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456677777877775 33444455555555555555555554
No 86
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=21.54 E-value=2.3e+02 Score=29.58 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy15160 304 EAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRE 339 (366)
Q Consensus 304 ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~ 339 (366)
=|..-|.+||.||.+|+..++-|++-|-.--+.-|.
T Consensus 269 iaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk 304 (497)
T COG3851 269 IAIQRLRELNQRLQKELARNRALAEQLISTEESIRK 304 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHH
Confidence 355559999999999999998888776554444433
No 87
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.27 E-value=6.3e+02 Score=22.99 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLE----VSETEIFLFLK 360 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~----e~~~~~~~~~~ 360 (366)
....-+..|..=+..|..++++..++...|.|=+..-+-.+..+|+++. |+..=|+||+.
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777778899999999999999999988887777788888776 44555777764
No 88
>KOG1621|consensus
Probab=21.26 E-value=1.1e+02 Score=31.51 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=35.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 318 TEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFL 357 (366)
Q Consensus 318 ~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~ 357 (366)
+-+..|.++++.++||...|+..|.+--.||++.++-|+.
T Consensus 344 Kktrt~EqVt~~f~dF~~g~~~vlq~yi~rLk~mR~alE~ 383 (458)
T KOG1621|consen 344 KKTRTVEQVTTTFMDFFGGQRSVLQQYIERLKSMRKALEH 383 (458)
T ss_pred hhhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhh
Confidence 3467788999999999999999999999999999988864
No 89
>PRK06746 peptide chain release factor 2; Provisional
Probab=21.13 E-value=8.7e+02 Score=24.58 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15160 291 DRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLK 331 (366)
Q Consensus 291 ~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~ 331 (366)
|...+.++++...+....+..|.. +..-++|-..+.+|+.
T Consensus 9 d~~~~~~~~ke~~~l~~~v~~~~~-~~~~~~d~~~~~el~~ 48 (326)
T PRK06746 9 DQQGAQAVINEANALKDMVGKFRQ-LDETFENLEITHELLK 48 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 457788888888888888877776 4444677777777764
No 90
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.81 E-value=6.9e+02 Score=23.26 Aligned_cols=59 Identities=10% Similarity=0.301 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKK 361 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~ 361 (366)
.+-++..-+..|-..|..++++ .+..-|..|+..+-.....+.++.+...++.+..+.+
T Consensus 65 kF~~~l~ei~~~~~~l~~q~e~--~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k 123 (200)
T cd07637 65 KFGDSLQEMVNYHMILFDQAQR--SVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVK 123 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666677777777766653 5667778888877777777778887777777666654
No 91
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=20.58 E-value=3.4e+02 Score=19.58 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 302 VNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIF 356 (366)
Q Consensus 302 v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~ 356 (366)
+++|...|.+-+.+|... --.|-..+.-|.... .++..++++|+..+.++.
T Consensus 1 fEe~~~~Le~Iv~~Le~~---~~sLdes~~lyeeg~-~l~~~c~~~L~~~e~~i~ 51 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESG---ELSLDESLKLYEEGM-ELIKKCQERLEEAEQKIE 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT----S-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 355666666666665532 234556666665553 456666777776666654
No 92
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=20.04 E-value=6.2e+02 Score=25.97 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAML 330 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L 330 (366)
..+.++++...+....++.|.. +....++-..+.+|+
T Consensus 49 ~~~~~~~ke~~~l~~~v~~~~~-~~~~~~d~~~l~el~ 85 (364)
T TIGR00020 49 ERAQAVIKERSSLEAVLDTLEE-LKNSLEDLSELLELA 85 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5555556666665555555554 444455555555555
No 93
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.04 E-value=4.4e+02 Score=20.75 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLK 360 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~ 360 (366)
-|++|..-|++-+.+|... --.|-..|..|.... .++..+..+|+..+.+|...+.
T Consensus 7 sfEe~l~~LE~IV~~LE~~---~l~Leesl~~ye~G~-~L~k~c~~~L~~ae~kv~~l~~ 62 (75)
T PRK14064 7 TFEEAIAELETIVEALENG---SASLEDSLDMYQKGI-ELTKLCQDKLQSAEKRMAKVVT 62 (75)
T ss_pred CHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888877643 235667777777664 5778888888888888887664
Done!