Query psy15160
Match_columns 366
No_of_seqs 209 out of 432
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:08:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km4_A Regulator of TY1 transp 100.0 3.3E-37 1.1E-41 269.0 13.9 131 2-133 1-134 (142)
2 4fu3_A Regulation of nuclear P 100.0 7E-36 2.4E-40 256.9 9.9 129 2-131 2-130 (135)
3 4flb_A Regulation of nuclear P 100.0 7.2E-34 2.5E-38 243.9 9.9 127 1-131 2-129 (132)
4 4fla_A Regulation of nuclear P 100.0 1.1E-28 3.8E-33 217.4 12.1 121 230-359 14-134 (152)
5 3d9j_A RNA-binding protein 16; 99.9 4.4E-27 1.5E-31 205.8 15.1 124 6-131 4-136 (145)
6 1sz9_A PCF11 protein; RNA poly 99.9 5.5E-26 1.9E-30 198.8 13.6 121 7-131 10-136 (144)
7 3clj_A Protein NRD1; CTD-inter 99.6 4.9E-15 1.7E-19 130.9 10.1 126 6-132 3-147 (157)
8 4fu3_A Regulation of nuclear P 95.6 0.0013 4.3E-08 55.5 -1.3 45 181-226 87-131 (135)
9 4flb_A Regulation of nuclear P 95.6 0.0031 1.1E-07 53.0 1.1 40 182-225 90-129 (132)
10 2km4_A Regulator of TY1 transp 95.4 0.0022 7.5E-08 55.1 -0.5 44 181-225 89-132 (142)
11 3d9j_A RNA-binding protein 16; 94.2 0.013 4.4E-07 50.5 1.2 42 181-224 94-135 (145)
12 1x5b_A Signal transducing adap 93.4 0.67 2.3E-05 40.4 10.8 127 1-131 8-144 (163)
13 1sz9_A PCF11 protein; RNA poly 91.8 0.034 1.2E-06 47.9 0.3 43 181-224 88-135 (144)
14 4fla_A Regulation of nuclear P 84.5 9.5 0.00032 32.9 10.8 16 269-284 21-37 (152)
15 1elk_A Target of MYB1; superhe 79.9 9 0.00031 32.9 9.0 120 9-131 17-149 (157)
16 1mhq_A ADP-ribosylation factor 79.8 8.8 0.0003 32.7 8.8 107 21-131 20-132 (148)
17 3ldz_A STAM-1, signal transduc 79.7 8.7 0.0003 32.3 8.7 89 21-114 24-114 (140)
18 3g2s_A C-terminal fragment of 79.3 9.9 0.00034 32.5 9.0 109 21-130 30-141 (149)
19 1juq_A ADP-ribosylation factor 77.0 4.1 0.00014 35.6 6.0 124 7-131 12-144 (171)
20 1urf_A Protein kinase C-like 1 76.1 10 0.00035 29.5 7.3 51 308-358 9-62 (81)
21 3zyq_A Hepatocyte growth facto 75.3 12 0.00041 33.9 8.9 121 7-131 7-137 (226)
22 1dvp_A HRS, hepatocyte growth 72.5 11 0.00039 33.7 7.9 115 9-131 6-134 (220)
23 3rru_A TOM1L1 protein; structu 46.3 81 0.0028 26.8 8.2 106 21-131 35-149 (152)
24 3gp4_A Transcriptional regulat 44.3 1.2E+02 0.0043 25.0 9.0 46 302-347 79-124 (142)
25 3axj_A GM27569P, translin; tra 43.7 1.1E+02 0.0039 28.0 9.4 57 308-364 23-96 (249)
26 2jak_A Serine/threonine-protei 43.1 41 0.0014 33.3 6.5 82 28-116 285-366 (392)
27 3clj_A Protein NRD1; CTD-inter 42.5 1.5 5.2E-05 38.3 -3.4 35 190-224 111-145 (157)
28 2crn_A Ubash3A protein; compac 40.7 20 0.00068 26.3 3.0 33 2-36 19-51 (64)
29 1oxz_A ADP-ribosylation factor 40.2 1.9E+02 0.0066 25.4 11.8 83 276-361 36-129 (186)
30 3d5a_X RF1, peptide chain rele 40.1 1.6E+02 0.0056 28.6 10.2 66 293-359 29-96 (354)
31 2keb_A DNA polymerase subunit 39.7 61 0.0021 26.1 5.8 48 1-48 23-72 (101)
32 2fic_A Bridging integrator 1; 38.4 2.1E+02 0.0072 25.3 10.4 57 300-356 186-247 (251)
33 1naf_A ADP-ribosylation factor 38.1 1.9E+02 0.0066 24.8 10.3 83 277-361 21-113 (158)
34 2ke4_A CDC42-interacting prote 37.0 1.1E+02 0.0037 24.3 7.0 50 307-356 22-79 (98)
35 3oja_B Anopheles plasmodium-re 36.9 2.5E+02 0.0085 28.0 11.5 38 328-365 547-584 (597)
36 2ekk_A UBA domain from E3 ubiq 36.5 18 0.00062 24.5 2.0 28 2-33 19-46 (47)
37 1zww_A SH3-containing GRB2-lik 34.3 2.1E+02 0.0071 25.8 9.6 60 301-360 182-245 (256)
38 4e2i_2 DNA polymerase alpha su 33.7 60 0.002 25.0 4.7 48 1-49 1-50 (78)
39 2dak_A Ubiquitin carboxyl-term 33.2 21 0.00073 25.8 2.1 31 2-35 19-49 (63)
40 1m1j_C Fibrinogen gamma chain; 32.9 1.4E+02 0.0049 29.5 8.6 18 341-358 114-131 (409)
41 1j1j_A Translin; testis/brain 32.8 1.9E+02 0.0064 26.3 8.9 57 308-364 18-93 (240)
42 3a7p_A Autophagy protein 16; c 32.2 2.4E+02 0.0083 24.2 11.1 61 300-360 71-135 (152)
43 3ajm_A Programmed cell death p 31.9 1.6E+02 0.0056 26.6 8.0 63 301-363 95-168 (213)
44 2w6b_A RHO guanine nucleotide 31.4 1.4E+02 0.0049 21.3 6.7 36 300-335 17-52 (56)
45 2g3q_A Protein YBL047C; endocy 29.8 48 0.0017 21.8 3.3 29 2-33 14-42 (43)
46 1whc_A RSGI RUH-027, UBA/UBX 3 29.7 52 0.0018 23.9 3.7 33 2-36 19-51 (64)
47 1vek_A UBP14, ubiquitin-specif 29.6 36 0.0012 26.3 2.9 33 2-36 39-71 (84)
48 3k29_A Putative uncharacterize 29.2 2.9E+02 0.0099 24.1 9.2 55 304-358 71-125 (169)
49 1e91_A Paired amphipathic heli 29.1 84 0.0029 24.1 5.0 66 301-366 6-84 (85)
50 1vp7_A Exodeoxyribonuclease VI 27.5 1.6E+02 0.0055 23.5 6.5 53 302-358 32-84 (100)
51 3ajw_A Flagellar FLIJ protein; 27.3 2.4E+02 0.0083 22.7 10.7 39 318-356 67-105 (150)
52 2qk1_A Protein STU2; STU2P, XM 27.1 2.2E+02 0.0074 25.4 8.3 102 6-109 103-215 (249)
53 1xkp_A Putative membrane-bound 26.6 97 0.0033 28.5 5.8 70 258-334 87-157 (246)
54 2npp_B PP2A, B subunit, serine 26.0 71 0.0024 32.1 5.1 84 27-117 272-355 (449)
55 2dai_A Ubadc1, ubiquitin assoc 25.3 47 0.0016 25.6 2.9 32 2-36 39-70 (83)
56 3fga_B Serine/threonine-protei 24.7 80 0.0027 31.3 5.1 82 28-116 240-321 (403)
57 1gs9_A Apolipoprotein E, APOE4 24.7 2.9E+02 0.01 23.6 8.3 7 278-284 48-54 (165)
58 2dag_A Ubiquitin carboxyl-term 24.7 36 0.0012 25.6 2.1 33 2-36 19-51 (74)
59 4ae4_A Ubiquitin-associated pr 23.9 58 0.002 26.7 3.4 30 2-34 18-47 (118)
60 2cpw_A CBL-interacting protein 23.8 38 0.0013 24.7 2.0 33 2-36 29-61 (64)
61 3gpv_A Transcriptional regulat 23.1 2.5E+02 0.0086 23.2 7.4 41 302-342 93-133 (148)
62 1gqe_A Release factor 2, RF2; 23.0 3.9E+02 0.013 26.0 9.6 38 293-331 51-88 (365)
63 1wji_A Tudor domain containing 22.7 80 0.0028 22.9 3.6 31 2-35 19-49 (63)
64 2lbc_A Ubiquitin carboxyl-term 22.6 60 0.0021 26.4 3.3 34 2-37 13-46 (126)
65 2f05_A Paired amphipathic heli 22.4 1.6E+02 0.0055 23.5 5.7 65 301-365 6-83 (105)
66 1t3u_A Conserved hypothetical 21.6 2.8E+02 0.0097 21.4 7.3 20 341-360 77-96 (104)
67 2gvs_A Chemosensory protein CS 21.3 64 0.0022 26.2 3.0 40 76-116 40-79 (109)
68 3qb5_K Translin-associated pro 20.6 4.5E+02 0.015 24.5 9.3 58 308-365 38-111 (290)
69 1zbt_A RF-1, peptide chain rel 20.0 1.7E+02 0.0057 28.7 6.3 27 333-359 88-114 (371)
No 1
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=100.00 E-value=3.3e-37 Score=269.01 Aligned_cols=131 Identities=27% Similarity=0.500 Sum_probs=124.1
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhc--CcccchhHHHHhHHHHHHhhhc-CcchH
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKA--DDHRKLTLMYLANDVIQNSKKK-GPEYG 78 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka--~~~kKL~lLYLaNDVlQnskkk-g~~f~ 78 (366)
|+||+++|.++|++||+||+|||++|.|||+|+++++.||++|.++|.++ ++++||++|||||||+|||+++ +++|+
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~ 80 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQ 80 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHH
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHH
Confidence 79999999999999999999999999999999999999999999999986 7799999999999999999986 68999
Q ss_pred HHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhh
Q psy15160 79 KEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAA 133 (366)
Q Consensus 79 ~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~~~ 133 (366)
.+|+++||++|.+++ ...+++.+++|.|||+||++|+||++++|.+|+..+.+.
T Consensus 81 ~~F~~~L~~~~~~~~-~~~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~~ 134 (142)
T 2km4_A 81 DSFGKVAAEVLGRIN-QEFPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAA 134 (142)
T ss_dssp HHHHHTHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHhH
Confidence 999999999999999 456899999999999999999999999999999998743
No 2
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=100.00 E-value=7e-36 Score=256.91 Aligned_cols=129 Identities=53% Similarity=0.866 Sum_probs=123.5
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHH
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEF 81 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F 81 (366)
|+|++++|.++|++||+||+||++++.||++|++++..||++|.++|.++++++||++|||+|||+|||+++|++|+.+|
T Consensus 2 ssf~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f 81 (135)
T 4fu3_A 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREF 81 (135)
T ss_dssp -CCCHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred CCCCHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy15160 82 GHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 131 (366)
Q Consensus 82 ~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~ 131 (366)
+++||.+|.+++ ...+++++++|.|||++|++|+||++++|.+|+..|.
T Consensus 82 ~~~l~~~~~~~~-~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~ 130 (135)
T 4fu3_A 82 ESVLVDAFSHVA-READEGCKKPLERLLNIWQERSVYGGEFIQQLKLSME 130 (135)
T ss_dssp HTTHHHHHHHHH-HHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHh
Confidence 999999999999 4557789999999999999999999999999999886
No 3
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=243.87 Aligned_cols=127 Identities=39% Similarity=0.641 Sum_probs=121.5
Q ss_pred CCCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcC-cchHH
Q psy15160 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKG-PEYGK 79 (366)
Q Consensus 1 M~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg-~~f~~ 79 (366)
+++|.+++|.++|++||+||+||++++.|||+|++++..||++|.++|.++++++||++|||+|||+|||++++ +.|..
T Consensus 2 ~~~~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~ 81 (132)
T 4flb_A 2 SAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRE 81 (132)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHH
T ss_pred CchHHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999885 68999
Q ss_pred HHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy15160 80 EFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 131 (366)
Q Consensus 80 ~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~ 131 (366)
.|+++||.+|.+++ +++.+++|.|||++|++|+||++++|.+|+..|.
T Consensus 82 ~f~~~l~~~~~~~~----~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~ 129 (132)
T 4flb_A 82 SFADVLPEAAALVK----DPSVSKSVERIFKIWEDRNVYPEEMIVALREALS 129 (132)
T ss_dssp HHHTTHHHHHHTTC----STTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC----CHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHh
Confidence 99999999999887 6788999999999999999999999999999996
No 4
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=217.44 Aligned_cols=121 Identities=37% Similarity=0.534 Sum_probs=109.7
Q ss_pred cchhhcCCCcchhhHhhhhhhhhcccCCcHHHHHHhhcCCCCchhhhhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy15160 230 PQTKRRKLSESNTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLL 309 (366)
Q Consensus 230 ~~~~~~k~p~~~~eli~~l~~~e~s~sSp~~~r~~ia~lpPEveel~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l 309 (366)
+.-+.+.||. +++||+.++++++++|||+.+|++||+|||||+|+++|++|+|+ ++|++|+++|++||++|
T Consensus 14 ~~~~~~~p~~-~~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk--------~~~e~l~~~veeA~~~L 84 (152)
T 4fla_A 14 LYFQGAGPLL-TEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDK--------EAAERLSKTVDEACLLL 84 (152)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSH--------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC-HHHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcccH--------HHHHHHHHHHHHHHHHH
Confidence 3333344454 89999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 310 TNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 310 ~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~ 359 (366)
++||+||++||++|++|++||++|+..|++.+++++++|++|+.++.++.
T Consensus 85 ~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 85 AEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875
No 5
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.95 E-value=4.4e-27 Score=205.82 Aligned_cols=124 Identities=17% Similarity=0.325 Sum_probs=117.3
Q ss_pred HHHHHHHHHhc-----cccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCc----c
Q psy15160 6 QSALISKLEEL-----NASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGP----E 76 (366)
Q Consensus 6 e~~l~~kL~~L-----~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~----~ 76 (366)
-+.|+.+|++| ++|+.+|++++.||++|++++..||++|.++++++++.+||.+|||+|||+||++++++ .
T Consensus 4 v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~ 83 (145)
T 3d9j_A 4 VKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDV 83 (145)
T ss_dssp HHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCS
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCcccc
Confidence 47899999999 67899999999999999999999999999999999999999999999999999998743 7
Q ss_pred hHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy15160 77 YGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 131 (366)
Q Consensus 77 f~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~ 131 (366)
|...|+++|+.+|.+++ . .+++++.++.|||+||++|+||++++|..|+..+.
T Consensus 84 f~~~F~~~L~~~f~~~~-~-~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 84 FAPRFSNNIISTFQNLY-R-CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp HHHHHHHHHHHHHHHHT-S-SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999 3 45899999999999999999999999999999996
No 6
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.93 E-value=5.5e-26 Score=198.77 Aligned_cols=121 Identities=20% Similarity=0.282 Sum_probs=116.3
Q ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHHHH
Q psy15160 7 SALISKLEELN-ASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVL 85 (366)
Q Consensus 7 ~~l~~kL~~L~-~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~vL 85 (366)
+.|.++|++|+ +|+.+|++++.||++|++++..||++|.+++.++++.+||.+|||+|||++|+ |++|...|+++|
T Consensus 10 ~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~---g~~y~~~F~~~l 86 (144)
T 1sz9_A 10 KDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNV---GSPYTIYFSRNL 86 (144)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT---CTTHHHHHHTTH
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhc---cchHHHHHHHHH
Confidence 57899999999 99999999999999999999999999999999999999999999999999996 467999999999
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhhhC-----CCCCHHHHHHHHHHHH
Q psy15160 86 KQAFVSVGDVHCSEKTRSSLSRILNIWEER-----GVYDKQQIASFRTAFN 131 (366)
Q Consensus 86 ~~af~~i~~~~~d~~~~~kv~RIL~IW~eR-----~Vy~~~~i~~L~~~L~ 131 (366)
+++|.+++ ...|+.++.+|.||+++|++| +||+++++..|+..|.
T Consensus 87 ~~~f~~~~-~~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 87 FNLYKRTY-LLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLI 136 (144)
T ss_dssp HHHHHHHH-HTSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHH
Confidence 99999999 567999999999999999999 9999999999999997
No 7
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.9e-15 Score=130.94 Aligned_cols=126 Identities=18% Similarity=0.356 Sum_probs=112.8
Q ss_pred HHHHHHHHHhc-----cccHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhh---c-C--
Q psy15160 6 QSALISKLEEL-----NASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKK---K-G-- 74 (366)
Q Consensus 6 e~~l~~kL~~L-----~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskk---k-g-- 74 (366)
-+.|+.-|++| -.|..-|.++..||++|.+++..||+++.++++++++.+||..||+++.|+.+++. + |
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~ 82 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNS 82 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCc
Confidence 78899999988 57889999999999999999999999999999999999999999999999999873 1 2
Q ss_pred -----cch---HHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q psy15160 75 -----PEY---GKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNA 132 (366)
Q Consensus 75 -----~~f---~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~~ 132 (366)
..| +.-|...++..|..++ ...+++.+.++.++|+||+.+++|++++|..|++.+..
T Consensus 83 ~~a~~gt~a~~v~~~~e~i~~l~~~~~-~~~~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~~~ 147 (157)
T 3clj_A 83 SSNKPGTCAHAINTLGEVIQELLSDAI-AKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFA 147 (157)
T ss_dssp ---STTSHHHHHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHhhh
Confidence 236 4567889999999988 45689999999999999999999999999999988863
No 8
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=95.61 E-value=0.0013 Score=55.54 Aligned_cols=45 Identities=33% Similarity=0.648 Sum_probs=37.6
Q ss_pred ccccccccccCCccccccccchhchhhccccchhhHHHHHHHhhhh
Q psy15160 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNA 226 (366)
Q Consensus 181 ~af~hva~~~~dek~~~~l~r~l~Iw~er~vye~~~i~~~~~~~~~ 226 (366)
.+|.|++. ..++++++.+.|+++||++|++|+++++++++.++..
T Consensus 87 ~~~~~~~~-~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~~ 131 (135)
T 4fu3_A 87 DAFSHVAR-EADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMED 131 (135)
T ss_dssp HHHHHHHH-HHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC--
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhC
Confidence 46777763 4578899999999999999999999999999988843
No 9
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=95.60 E-value=0.0031 Score=53.04 Aligned_cols=40 Identities=35% Similarity=0.627 Sum_probs=35.2
Q ss_pred cccccccccCCccccccccchhchhhccccchhhHHHHHHHhhh
Q psy15160 182 AFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 225 (366)
Q Consensus 182 af~hva~~~~dek~~~~l~r~l~Iw~er~vye~~~i~~~~~~~~ 225 (366)
+|.|++ |+++++.+.|+++||++|++|+++++++++.+++
T Consensus 90 ~~~~~~----~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~ 129 (132)
T 4flb_A 90 AAALVK----DPSVSKSVERIFKIWEDRNVYPEEMIVALREALS 129 (132)
T ss_dssp HHHTTC----STTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHT
T ss_pred HHHHhC----CHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHh
Confidence 566664 6888999999999999999999999999998874
No 10
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=95.39 E-value=0.0022 Score=55.07 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=38.5
Q ss_pred ccccccccccCCccccccccchhchhhccccchhhHHHHHHHhhh
Q psy15160 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 225 (366)
Q Consensus 181 ~af~hva~~~~dek~~~~l~r~l~Iw~er~vye~~~i~~~~~~~~ 225 (366)
.+|.|++.. .|++.++.+.|+++||++|++|+.+++++++..+.
T Consensus 89 ~~~~~~~~~-~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~ 132 (142)
T 2km4_A 89 EVLGRINQE-FPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLA 132 (142)
T ss_dssp HHHHHHHHH-SCHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHH
Confidence 477788743 58999999999999999999999999999988773
No 11
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=94.21 E-value=0.013 Score=50.52 Aligned_cols=42 Identities=21% Similarity=0.557 Sum_probs=36.7
Q ss_pred ccccccccccCCccccccccchhchhhccccchhhHHHHHHHhh
Q psy15160 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAF 224 (366)
Q Consensus 181 ~af~hva~~~~dek~~~~l~r~l~Iw~er~vye~~~i~~~~~~~ 224 (366)
.+|.|+. .++++++..+.|+++||++|++|.+++++.|+..+
T Consensus 94 ~~f~~~~--~~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l 135 (145)
T 3d9j_A 94 STFQNLY--RCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMA 135 (145)
T ss_dssp HHHHHHT--SSCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHH--hCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 3677776 24699999999999999999999999999999877
No 12
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=93.37 E-value=0.67 Score=40.43 Aligned_cols=127 Identities=15% Similarity=0.151 Sum_probs=83.6
Q ss_pred CCCCCHHHHHHHHHhcccc------HHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-
Q psy15160 1 MAGFTQSALISKLEELNAS------QQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK- 73 (366)
Q Consensus 1 M~~Fse~~l~~kL~~L~~S------q~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk- 73 (366)
|--|+...|...+...++. =..|-.+..-+-.....+.+.+..+.+.|...++...+.-|-|++-+++||-..
T Consensus 8 M~~~~~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 8 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp CCCCCCCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcCCChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 5556666677777766643 344555555555555577889999999998777888888899999999997543
Q ss_pred CcchH-HHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHH
Q psy15160 74 GPEYG-KEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEER--GVYDKQQIASFRTAFN 131 (366)
Q Consensus 74 g~~f~-~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR--~Vy~~~~i~~L~~~L~ 131 (366)
..++. +.|-..|..++. ...++.++.++..++.-|.+- +.-.-..|..+...|.
T Consensus 88 h~evas~~Fl~el~~l~~----~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk 144 (163)
T 1x5b_A 88 HLEVCSRDFATEVRAVIK----NKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMK 144 (163)
T ss_dssp HHHHTSHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 21221 334443444442 234789999999999999972 2222245666666665
No 13
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=91.83 E-value=0.034 Score=47.88 Aligned_cols=43 Identities=9% Similarity=0.325 Sum_probs=38.6
Q ss_pred ccccccccccCCccccccccchhchhhcc-----ccchhhHHHHHHHhh
Q psy15160 181 QAFVSVGDVHCSEKTRSSLSRILNIWEER-----GVYDKQQIASFRTAF 224 (366)
Q Consensus 181 ~af~hva~~~~dek~~~~l~r~l~Iw~er-----~vye~~~i~~~~~~~ 224 (366)
.+|.|+. ...|++++..+.|+++||+++ ++|.+++++.|+..+
T Consensus 88 ~~f~~~~-~~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l 135 (144)
T 1sz9_A 88 NLYKRTY-LLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFL 135 (144)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHH
Confidence 4788887 457999999999999999999 999999999998877
No 14
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=84.46 E-value=9.5 Score=32.95 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.5
Q ss_pred CCCchhh-hhhHhhhCC
Q psy15160 269 PPEVSEI-QLLSKVQGK 284 (366)
Q Consensus 269 pPEveel-~~L~~Led~ 284 (366)
||+|+|| .+|++|+|+
T Consensus 21 p~~~~elik~L~~le~s 37 (152)
T 4fla_A 21 PLLTEELIKALQDLENA 37 (152)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhcc
Confidence 7899999 799999999
No 15
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=79.95 E-value=9 Score=32.86 Aligned_cols=120 Identities=4% Similarity=0.088 Sum_probs=72.7
Q ss_pred HHHHHHhcccc------HHHHHHHHHHHhhhccchhHHHHHHHHHHhh-cCcccchhHHHHhHHHHHHhhhcCcchHHHH
Q psy15160 9 LISKLEELNAS------QQSIQTLSLWLIHHRKHHSTIVKTWIDEVEK-ADDHRKLTLMYLANDVIQNSKKKGPEYGKEF 81 (366)
Q Consensus 9 l~~kL~~L~~S------q~SIqtlS~W~l~h~k~a~~IV~~w~~~L~k-a~~~kKL~lLYLaNDVlQnskkkg~~f~~~F 81 (366)
+...+...++. =..|-.+..-+-.....+.+.+..+.+.|.. .++...+.-|-|++-+++||-.. |..++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~---fh~ev 93 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR---FHVLV 93 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH---HHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH---HHHHH
Confidence 44555555432 3445556664544455778899999999974 55666788889999999997432 33222
Q ss_pred H--HHHHH-HHHHhccc-CCChHHHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHH
Q psy15160 82 G--HVLKQ-AFVSVGDV-HCSEKTRSSLSRILNIWEER--GVYDKQQIASFRTAFN 131 (366)
Q Consensus 82 ~--~vL~~-af~~i~~~-~~d~~~~~kv~RIL~IW~eR--~Vy~~~~i~~L~~~L~ 131 (366)
. .+|.+ ++..+.+. ..+..+++++..++.-|.+- +.-+-..+..+...|.
T Consensus 94 a~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~~Lk 149 (157)
T 1elk_A 94 ASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLR 149 (157)
T ss_dssp TSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 1 23333 33334321 23468999999999999983 2212234555555553
No 16
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=79.77 E-value=8.8 Score=32.70 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHH--HHHHHHHHHHhcc----
Q psy15160 21 QSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEF--GHVLKQAFVSVGD---- 94 (366)
Q Consensus 21 ~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F--~~vL~~af~~i~~---- 94 (366)
..|-.+..-+-.....+...+..+.+.|...++...+.-|-|++-+++||-.. |..++ ..+|..++..+.+
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~---fh~evas~~Fl~eL~kl~~~k~~~ 96 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK---FHSEVAKFRFLNELIKVLSPKYLG 96 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH---HHHHHTSHHHHHHHHHTTCCSTTS
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH---HHHHHhhHHHHHHHHHHHccccCC
Confidence 44555555555555567888999999998777888888889999999997533 33222 2334444433332
Q ss_pred cCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy15160 95 VHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 131 (366)
Q Consensus 95 ~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~ 131 (366)
...+..++.++..++.-|.+.==..+. +..+...|.
T Consensus 97 ~~~~~~Vk~kil~li~~W~~~f~~~p~-i~~~y~~Lk 132 (148)
T 1mhq_A 97 SWATGKVKGRVIEILFSWTVWFPEDIK-IRDAYQMLK 132 (148)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHH
Confidence 124789999999999999985222344 455555554
No 17
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=79.75 E-value=8.7 Score=32.31 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Ccch-HHHHHHHHHHHHHHhcccCCC
Q psy15160 21 QSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEY-GKEFGHVLKQAFVSVGDVHCS 98 (366)
Q Consensus 21 ~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f-~~~F~~vL~~af~~i~~~~~d 98 (366)
..|-.+..-+-.....+.+.+..+.+.|...++...+.-|-|++-+++||-.. ..++ ...|-..|..++. ..+
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~-----~~~ 98 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN-----KGH 98 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHH-----HSC
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhc-----cCC
Confidence 44555555555555567888999999998777777777788999999997533 1111 1233333333332 237
Q ss_pred hHHHHHHHHHHHHhhh
Q psy15160 99 EKTRSSLSRILNIWEE 114 (366)
Q Consensus 99 ~~~~~kv~RIL~IW~e 114 (366)
+.++.++..++.-|.+
T Consensus 99 ~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 99 PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999986
No 18
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=79.33 E-value=9.9 Score=32.51 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Ccch-HHHHHHHHHHHHHHhcc-cCC
Q psy15160 21 QSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEY-GKEFGHVLKQAFVSVGD-VHC 97 (366)
Q Consensus 21 ~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f-~~~F~~vL~~af~~i~~-~~~ 97 (366)
+.|-.+..-+-.....+...+..+.+.|...++...|.-|-|+.-+++||-.. ..++ ...|-.-|..++..-+. ...
T Consensus 30 ~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~ 109 (149)
T 3g2s_A 30 ASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRT 109 (149)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGS
T ss_pred HHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCC
Confidence 34555555444444467888999999998767777788888999999987543 1111 22233333333321110 135
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q psy15160 98 SEKTRSSLSRILNIWEERGVYDKQQIASFRTAF 130 (366)
Q Consensus 98 d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L 130 (366)
+..++.++..++.-|.+.==..+. +......|
T Consensus 110 ~~~Vk~kil~li~~W~~~f~~~p~-i~~~Y~~L 141 (149)
T 3g2s_A 110 SEKVKNKILELLYSWTVGLPEEVK-IAEAYQML 141 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCch-HHHHHHHH
Confidence 789999999999999984222333 44444444
No 19
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.02 E-value=4.1 Score=35.64 Aligned_cols=124 Identities=13% Similarity=0.113 Sum_probs=76.9
Q ss_pred HHHHHHHHhcccc------HHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Ccch-H
Q psy15160 7 SALISKLEELNAS------QQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEY-G 78 (366)
Q Consensus 7 ~~l~~kL~~L~~S------q~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f-~ 78 (366)
..|.+.+...++. =..|-.+..-+-.....+.+.+..+.+.|...++...|.-|-|++-+++||-.. ..++ .
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas 91 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK 91 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 3466666655543 244556666555555567888899999998777788888899999999997543 2222 1
Q ss_pred HHHHHHHHHHHHHhcc-cCCChHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy15160 79 KEFGHVLKQAFVSVGD-VHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 131 (366)
Q Consensus 79 ~~F~~vL~~af~~i~~-~~~d~~~~~kv~RIL~IW~eR~Vy~~~~i~~L~~~L~ 131 (366)
..|-.-|..++..-+. ...+..+++++..++.-|.+-==..+ .+..+...|.
T Consensus 92 ~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~-~i~~~y~~Lk 144 (171)
T 1juq_A 92 FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEA-KIKDAYHMLK 144 (171)
T ss_dssp HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc-HHHHHHHHHH
Confidence 2233333333321110 12468999999999999997422233 3555555554
No 20
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=76.13 E-value=10 Score=29.45 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy15160 308 LLTNYNTRLVTEMEDRKRASAMLKDYIAAQ---RELLEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 308 ~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q---~~~~~~~~~~l~e~~~~~~~~ 358 (366)
.|...-..|.-|++=..=..+|+..|...- |.+|+.|.+.|++.+.||+..
T Consensus 9 rl~~L~kqL~IElkVK~GAENmi~~y~~g~~~drKlLaeAQqmL~DSk~KIe~l 62 (81)
T 1urf_A 9 RVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDII 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888888999887654 889999999999999999864
No 21
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.30 E-value=12 Score=33.93 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=79.5
Q ss_pred HHHHHHHHhcccc------HHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Ccch-H
Q psy15160 7 SALISKLEELNAS------QQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GPEY-G 78 (366)
Q Consensus 7 ~~l~~kL~~L~~S------q~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~~f-~ 78 (366)
..|.+.+...|+. -+.|-.+..-+-.....+.+.+..+.+.|...++...|.-|-|+.-+++||-.. ..++ .
T Consensus 7 ~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias 86 (226)
T 3zyq_A 7 GTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN 86 (226)
T ss_dssp CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc
Confidence 4566666555432 356667777666555678899999999998777888888888999999998654 2211 2
Q ss_pred HHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHH
Q psy15160 79 KEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEER--GVYDKQQIASFRTAFN 131 (366)
Q Consensus 79 ~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR--~Vy~~~~i~~L~~~L~ 131 (366)
..|-..|..++. ...+..++.++..+|.-|.+- +--.-..+..+...|.
T Consensus 87 ~~fl~~l~~l~~----~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk 137 (226)
T 3zyq_A 87 KQTMEELKDLLK----RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMK 137 (226)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 233333333332 345789999999999999973 2211234556665554
No 22
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.47 E-value=11 Score=33.74 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=74.5
Q ss_pred HHHHHHhccc------cHHHHHHHHHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhc-Cc-----c
Q psy15160 9 LISKLEELNA------SQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK-GP-----E 76 (366)
Q Consensus 9 l~~kL~~L~~------Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkk-g~-----~ 76 (366)
|.+.+...|+ .=..|-.+..-+-.....+.+.+..+.+.|...++...+.-|.|++-++.||-.+ .. +
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~ 85 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE 85 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH
Confidence 5555554443 2344555666555555678899999999998777888888899999999997543 11 3
Q ss_pred hHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHH
Q psy15160 77 YGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEER--GVYDKQQIASFRTAFN 131 (366)
Q Consensus 77 f~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR--~Vy~~~~i~~L~~~L~ 131 (366)
|.+++.. ++.. ..+..+++++..++..|.+- +--.-..+......|.
T Consensus 86 fl~~l~~----l~~~----~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~Lk 134 (220)
T 1dvp_A 86 NCEMFSS----FLES----TPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILK 134 (220)
T ss_dssp HHHHHHH----HHHH----CSCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHH----HhcC----CCcHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 4444333 3322 34789999999999999963 2212223445444554
No 23
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=46.29 E-value=81 Score=26.80 Aligned_cols=106 Identities=8% Similarity=0.117 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHhhc-CcccchhHHHHhHHHHHHhhhcCcchHHHHH--HHHHH-HHHHhccc-
Q psy15160 21 QSIQTLSLWLIHHRKHHSTIVKTWIDEVEKA-DDHRKLTLMYLANDVIQNSKKKGPEYGKEFG--HVLKQ-AFVSVGDV- 95 (366)
Q Consensus 21 ~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ka-~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~--~vL~~-af~~i~~~- 95 (366)
+.|-.+..-+-.....+.+.+..+.+.|... ++.-.+.-|-|+.-+++||-. .|-.++. .+|.+ +...+.+.
T Consensus 35 ~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~---~fh~eiask~Fl~e~L~kl~~~~~ 111 (152)
T 3rru_A 35 GQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP---SFQSLIVKKEFVKENLVKLLNPRY 111 (152)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH---HHHHHHSSHHHHTTTTGGGGSGGG
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH---HHHHHHHhhHhHHHHHHHHhcCCC
Confidence 4555666656555567788999999999742 333344456788888888643 3433332 23333 22222211
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHH
Q psy15160 96 HCSEKTRSSLSRILNIWEERGVYD----KQQIASFRTAFN 131 (366)
Q Consensus 96 ~~d~~~~~kv~RIL~IW~eR~Vy~----~~~i~~L~~~L~ 131 (366)
..+..++.++..++.-|.+ -|. -..+..+...|.
T Consensus 112 ~~~~~Vk~kil~li~~Wa~--~F~~~p~l~~i~~~Y~~Lk 149 (152)
T 3rru_A 112 NLPLDIQNRILNFIKTWSQ--GFPGGVDVSEVKEVYLDLV 149 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHT--CCSSSCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH--HhCCCCcchHHHHHHHHHH
Confidence 2345799999999999997 243 355666655553
No 24
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.35 E-value=1.2e+02 Score=25.03 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 302 VNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQR 347 (366)
Q Consensus 302 v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~ 347 (366)
+.+...+|.+....|.+++.+-..+...|...+...++.+...++.
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~ 124 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEE 124 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888889999998888887777777776666555444443
No 25
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=43.68 E-value=1.1e+02 Score=28.00 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15160 308 LLTNYNTRLVTEMEDRKRASAMLKDYIAA-----------------QRELLEQAEQRLEVSETEIFLFLKKFDG 364 (366)
Q Consensus 308 ~l~~y~~rL~~e~~~r~~l~~~L~~~~~~-----------------q~~~~~~~~~~l~e~~~~~~~~~~~~~~ 364 (366)
+...|...|+++-+-|.++.+.-++.... ...++.+|+++|++.++.+......++|
T Consensus 23 iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~~~~~L~~~l~~ 96 (249)
T 3axj_A 23 IFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQKYQKLAELVPA 96 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566666666666677766666665554 2345888999999998888777766665
No 26
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=43.05 E-value=41 Score=33.32 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=58.9
Q ss_pred HHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Q psy15160 28 LWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSR 107 (366)
Q Consensus 28 ~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~vL~~af~~i~~~~~d~~~~~kv~R 107 (366)
+++-....-+..++....++-=++++.|-+.||..+.+|+... =-..|..+++.+|..++ .+.++..-+-..|
T Consensus 285 qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~------~~~~f~~i~~~lF~~la-~ci~S~hfqVAEr 357 (392)
T 2jak_A 285 QFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI------EPSEFVKIMEPLFRQLA-KCVSSPHFQVAER 357 (392)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHH-HHHTCSSHHHHHH
T ss_pred HHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHH-HHHcCCcHHHHHH
Confidence 3444344444555555544444588899999999999999752 13578899999999988 4555677788999
Q ss_pred HHHHhhhCC
Q psy15160 108 ILNIWEERG 116 (366)
Q Consensus 108 IL~IW~eR~ 116 (366)
.|.+|....
T Consensus 358 AL~~wnNe~ 366 (392)
T 2jak_A 358 ALYYWNNEY 366 (392)
T ss_dssp HHGGGGCHH
T ss_pred HHHHhCcHH
Confidence 999998654
No 27
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=42.47 E-value=1.5 Score=38.26 Aligned_cols=35 Identities=17% Similarity=0.602 Sum_probs=28.3
Q ss_pred cCCccccccccchhchhhccccchhhHHHHHHHhh
Q psy15160 190 HCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAF 224 (366)
Q Consensus 190 ~~dek~~~~l~r~l~Iw~er~vye~~~i~~~~~~~ 224 (366)
++++..+..+.++++||+.+++|.+.+|+.|+..+
T Consensus 111 ~~~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~ 145 (157)
T 3clj_A 111 KSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKC 145 (157)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHH
T ss_pred cCCHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHh
Confidence 34778888999999999999999888886665433
No 28
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.68 E-value=20 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKH 36 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~ 36 (366)
|+|+++...+-|..-.+ .+++....|++.|...
T Consensus 19 MGF~~~~a~~AL~~t~n--~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 19 MGFPVHTALKALAATGR--KTAEEALAWLHDHCND 51 (64)
T ss_dssp TSCCHHHHHHHHHHHTS--CCHHHHHHHHHHHSSS
T ss_pred cCCCHHHHHHHHHHhCC--CCHHHHHHHHHhCCCC
Confidence 78999999888885544 3799999999999754
No 29
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=40.24 E-value=1.9e+02 Score=25.45 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=59.0
Q ss_pred hhhHhhhCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHH-----H-HHHHHHHH
Q psy15160 276 QLLSKVQGKNITGQP-DRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKR----ASAMLKDYIA-----A-QRELLEQA 344 (366)
Q Consensus 276 ~~L~~Led~~~~~~~-~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~----l~~~L~~~~~-----~-q~~~~~~~ 344 (366)
..|++|-.+ |.| |+.+|-+|-+..=..=..=.+|.+++..|++.=+. |.+||..|.. . ..+++.+.
T Consensus 36 a~L~eLirs---~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL 112 (186)
T 1oxz_A 36 KMLARLLKS---SHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKEL 112 (186)
T ss_dssp HHHHHHHSC---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHH
T ss_pred HHHHHHhcC---CChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHH
Confidence 478888877 455 48888888875443334446777777778887443 4466666533 1 56899999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy15160 345 EQRLEVSETEIFLFLKK 361 (366)
Q Consensus 345 ~~~l~e~~~~~~~~~~~ 361 (366)
-..++.++.+|++++..
T Consensus 113 ~~~Ck~~qp~i~~Li~e 129 (186)
T 1oxz_A 113 YQRCERMRPTLFRLASD 129 (186)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
No 30
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=40.09 E-value=1.6e+02 Score=28.61 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAML--KDYIAAQRELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L--~~~~~~q~~~~~~~~~~l~e~~~~~~~~~ 359 (366)
+.+.++++...+--..++.|.. +....+|-..+.+|+ .++...-++-+...+.++++...+|...|
T Consensus 29 ~~~~~~~ke~~~l~~~v~~~~~-~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 29 GRYQSLSRRYAEMGEVIGLIRE-YRKVLEDLEQAESLLDDPELKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666665555555543 333334444455554 34555556677778888888888777766
No 31
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.74 E-value=61 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHh--ccccHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q psy15160 1 MAGFTQSALISKLEE--LNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEV 48 (366)
Q Consensus 1 M~~Fse~~l~~kL~~--L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L 48 (366)
||+-|.+.+.+-|+. ++.+-+-|..|..-|+.|+-.+.++|.-|+-+-
T Consensus 23 ~~~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFs 72 (101)
T 2keb_A 23 SMSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFC 72 (101)
T ss_dssp -CCCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788899999999995 467889999999999999999999999998763
No 32
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=38.36 E-value=2.1e+02 Score=25.32 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 300 IQVNEAVDLLTNYNTRLVTEMEDRKRA-----SAMLKDYIAAQRELLEQAEQRLEVSETEIF 356 (366)
Q Consensus 300 ~~v~ea~~~l~~y~~rL~~e~~~r~~l-----~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~ 356 (366)
..+++|-...+.+|.-|..||..=..+ ...|..|+..|.....++-+-+++....|.
T Consensus 186 ~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~ 247 (251)
T 2fic_A 186 EELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 247 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888899999999998653322 469999999999999999888887777664
No 33
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=38.13 E-value=1.9e+02 Score=24.81 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=49.9
Q ss_pred hhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHH------HHHHHHHHHH
Q psy15160 277 LLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKR----ASAMLKDYIAA------QRELLEQAEQ 346 (366)
Q Consensus 277 ~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~----l~~~L~~~~~~------q~~~~~~~~~ 346 (366)
.|++|-.+ ....|+.+|-+|-+..=.-=..=.+|.+++..|++.=+. |.+||..|... ..+++.+.-.
T Consensus 21 ~L~~Lirs--~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~ 98 (158)
T 1naf_A 21 MLARLLKS--SHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 98 (158)
T ss_dssp HHHHHHSS--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHH
T ss_pred HHHHHHhc--CChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHH
Confidence 45555544 122356677766664322223335666666667776533 44666655322 4478888888
Q ss_pred HHHHHHHHHHHHHhh
Q psy15160 347 RLEVSETEIFLFLKK 361 (366)
Q Consensus 347 ~l~e~~~~~~~~~~~ 361 (366)
.++..+.+|++++..
T Consensus 99 ~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 99 RCERMRPTLFRLASD 113 (158)
T ss_dssp HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888754
No 34
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.04 E-value=1.1e+02 Score=24.29 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q psy15160 307 DLLTNYNTRLVTEMEDRKRASAMLKDYIAA--------QRELLEQAEQRLEVSETEIF 356 (366)
Q Consensus 307 ~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~--------q~~~~~~~~~~l~e~~~~~~ 356 (366)
..|.+.+.-+..|+..|.-|+.|...|... +...|.++..+|+-.+..+.
T Consensus 22 ~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 22 QQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999998753 45566666666665555443
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.88 E-value=2.5e+02 Score=27.97 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15160 328 AMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKKFDGE 365 (366)
Q Consensus 328 ~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~~~~~~ 365 (366)
..|+..++.+++.+.+..+.+...+.++.-..+++++.
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 36777888888888888888888888888888887764
No 36
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.47 E-value=18 Score=24.54 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHH 33 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h 33 (366)
|+|+++...+-|..-+ .++....|++.|
T Consensus 19 MGF~~~~a~~AL~~~~----n~e~A~~~L~~h 46 (47)
T 2ekk_A 19 MGFTREHAMEALLNTS----TMEQATEYLLTH 46 (47)
T ss_dssp HHCCHHHHHHHHHHSC----SHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHcC----CHHHHHHHHHcC
Confidence 5799999888888753 699999999987
No 37
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=34.29 E-value=2.1e+02 Score=25.80 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15160 301 QVNEAVDLLTNYNTRLVTEME----DRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLK 360 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~----~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~~~ 360 (366)
.++.|-..+++++.-+..+|. .+..-..-|.+|+..|.+-..++-+.|++....|...+.
T Consensus 182 Ele~A~~~fe~~~e~~~~~m~~l~~~e~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~ 245 (256)
T 1zww_A 182 ELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIR 245 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777766666663 223445888999999999999999999999998887654
No 38
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=33.73 E-value=60 Score=24.97 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHh--ccccHHHHHHHHHHHhhhccchhHHHHHHHHHHh
Q psy15160 1 MAGFTQSALISKLEE--LNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVE 49 (366)
Q Consensus 1 M~~Fse~~l~~kL~~--L~~Sq~SIqtlS~W~l~h~k~a~~IV~~w~~~L~ 49 (366)
|+ -|-+.|.+-|.. ++.+.+-|..|.--|+.|+.++.++|.-|+-+..
T Consensus 1 m~-vs~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~ 50 (78)
T 4e2i_2 1 MS-ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCT 50 (78)
T ss_dssp CC-CCHHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHH
T ss_pred Cc-cCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44 788889998884 5688899999999999999999999999987754
No 39
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.16 E-value=21 Score=25.81 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhcc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRK 35 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k 35 (366)
|+|+++...+-|+.-++ .++.+..|++.|..
T Consensus 19 MGF~~~~a~~AL~~t~~---nve~A~e~L~~~~~ 49 (63)
T 2dak_A 19 MGFSRDQALKALRATNN---SLERAVDWIFSHID 49 (63)
T ss_dssp HTCCHHHHHHHHHHTTS---CSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCC---CHHHHHHHHHhCCC
Confidence 58999999998887665 58999999998854
No 40
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.91 E-value=1.4e+02 Score=29.54 Aligned_cols=18 Identities=6% Similarity=0.027 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15160 341 LEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 341 ~~~~~~~l~e~~~~~~~~ 358 (366)
+...+.+++..+.+|...
T Consensus 114 ~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 114 HIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 334444455544444433
No 41
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=32.80 E-value=1.9e+02 Score=26.32 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH--------H-----------HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15160 308 LLTNYNTRLVTEMEDRKRASAMLKDYIAA--------Q-----------RELLEQAEQRLEVSETEIFLFLKKFDG 364 (366)
Q Consensus 308 ~l~~y~~rL~~e~~~r~~l~~~L~~~~~~--------q-----------~~~~~~~~~~l~e~~~~~~~~~~~~~~ 364 (366)
+.+.|...|+++-+-|.++.+.-++.... | .+++.+|+++|++.+..+......++|
T Consensus 18 ~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~L~~~l~~ 93 (240)
T 1j1j_A 18 IFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPA 93 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 46677777888888888888777776665 2 234788999999998888776666654
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.19 E-value=2.4e+02 Score=24.19 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q psy15160 300 IQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEV----SETEIFLFLK 360 (366)
Q Consensus 300 ~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e----~~~~~~~~~~ 360 (366)
..+..-+.-|..=+..|..|++.+.++.+.|.|=+..-+-.+..+|.++.. ++.=|+||+.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777888888999999999999999999877766666666666653 5566778875
No 43
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=31.88 E-value=1.6e+02 Score=26.63 Aligned_cols=63 Identities=29% Similarity=0.430 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhcC
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQ-----------AEQRLEVSETEIFLFLKKFD 363 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~-----------~~~~l~e~~~~~~~~~~~~~ 363 (366)
.++.-..-|-.--.|+=+||-||+...+++++--.+.|.+|+- ..+.||..|++--.+++.|.
T Consensus 95 el~~rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~~k~~le~~KreFVkySKrFS 168 (213)
T 3ajm_A 95 DLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFS 168 (213)
T ss_dssp HHHHHHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhHhh
Confidence 3444445566677899999999999999999888888888864 36778888888877877763
No 44
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=31.43 E-value=1.4e+02 Score=21.34 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy15160 300 IQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIA 335 (366)
Q Consensus 300 ~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~ 335 (366)
-+|++-..-....++.|..|..-|+.|..+++.++.
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357777777777888889999999999998887754
No 45
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.80 E-value=48 Score=21.78 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHH 33 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h 33 (366)
|+|+++...+-|..=+ ..++....|++.|
T Consensus 14 MGF~~~~a~~AL~~~~---~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 14 MGFTEEEAHNALEKCN---WDLEAATNFLLDS 42 (43)
T ss_dssp TTSCHHHHHHHHHHHT---SCHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHhC---cCHHHHHHHHHcC
Confidence 6899888887777543 3688888998876
No 46
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.69 E-value=52 Score=23.91 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKH 36 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~ 36 (366)
|+|+++...+-|..-.+ .+++.+..|++.|...
T Consensus 19 MGF~~~~a~~AL~~t~~--~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 19 MGFPRGRAEKALALTGN--QGIEAAMDWLMEHEDD 51 (64)
T ss_dssp TTCCHHHHHHHHHHHTS--CCHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHhcC--CCHHHHHHHHHhCCCC
Confidence 68999999988885411 3599999999998654
No 47
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.62 E-value=36 Score=26.26 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKH 36 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~ 36 (366)
|+|++....+-|..-.+. +++.+..|++.|...
T Consensus 39 MGF~~~~a~~AL~~t~n~--n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 39 MGFSQLHCQKAAINTSNA--GVEEAMNWLLSHMDD 71 (84)
T ss_dssp HTCCHHHHHHHHHHTTTC--CHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHcCC--CHHHHHHHHHhCCCc
Confidence 589998888888755432 688999999998754
No 48
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=29.19 E-value=2.9e+02 Score=24.12 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 304 EAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 304 ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~ 358 (366)
.++.+...|.+-|.....++.+-..-...-....++.|.+|.+-+-..+.....|
T Consensus 71 ~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 71 DAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777777777777666665555555555666666666665555555444
No 49
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=29.06 E-value=84 Score=24.12 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQ-------------RELLEQAEQRLEVSETEIFLFLKKFDGEY 366 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q-------------~~~~~~~~~~l~e~~~~~~~~~~~~~~~~ 366 (366)
.+++|..-|+.=-.|+..+-+-=+...+.|.+|...+ .++.++-..-+..+..=|.-|-.-||..|
T Consensus 6 ~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP~~~ 84 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAK 84 (85)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSCCCC
T ss_pred cHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHHHCcCcc
Confidence 4677777666666666665555577788888888776 56888888888888888888876677655
No 50
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=27.52 E-value=1.6e+02 Score=23.53 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 302 VNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLF 358 (366)
Q Consensus 302 v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~~~ 358 (366)
|++|..-|++-+.+|... --.|-..|.-|.+.. +|+..++++|++.+.+|...
T Consensus 32 FEeal~eLEeIV~~LE~g---el~LEesl~lyeeG~-~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 32 FETALAELESLVSAMENG---TLPLEQSLSAYRRGV-ELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554421 123444444444442 34444555555555554433
No 51
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=27.34 E-value=2.4e+02 Score=22.66 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=26.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 318 TEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIF 356 (366)
Q Consensus 318 ~e~~~r~~l~~~L~~~~~~q~~~~~~~~~~l~e~~~~~~ 356 (366)
.++..-......|...|..|+..+..++..++..+..+.
T Consensus 67 ~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~ 105 (150)
T 3ajw_A 67 NRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWR 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777777777777777776665543
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=27.06 E-value=2.2e+02 Score=25.36 Aligned_cols=102 Identities=10% Similarity=0.101 Sum_probs=59.5
Q ss_pred HHHHHHHHHhccccHHHHHHH----HHHHhhhc------cchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCc
Q psy15160 6 QSALISKLEELNASQQSIQTL----SLWLIHHR------KHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGP 75 (366)
Q Consensus 6 e~~l~~kL~~L~~Sq~SIqtl----S~W~l~h~------k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~ 75 (366)
...+-..|..+.....++++. ..-++.+. .+-..++......|...++.-|...+..+..++.+++..-.
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence 444556666666655554443 33344443 22456777777777666777888889888888887543212
Q ss_pred chHHHH-HHHHHHHHHHhcccCCChHHHHHHHHHH
Q psy15160 76 EYGKEF-GHVLKQAFVSVGDVHCSEKTRSSLSRIL 109 (366)
Q Consensus 76 ~f~~~F-~~vL~~af~~i~~~~~d~~~~~kv~RIL 109 (366)
.|...| ...+|.+...+. ..++.+|..-..++
T Consensus 183 ~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 183 TLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESF 215 (249)
T ss_dssp HHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 355555 555555544443 44666766544443
No 53
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=26.59 E-value=97 Score=28.55 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=46.7
Q ss_pred cHHHHHHhhcCCCCchhh-hhhHhhhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy15160 258 DANIREKIAKLPPEVSEI-QLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334 (366)
Q Consensus 258 p~~~r~~ia~lpPEveel-~~L~~Led~~~~~~~~~~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~ 334 (366)
+...+..+..+|++|++. -+|..|-+. .-|.|.. . .+.+.+.+|...|.+=.+ .++.-+....-.+..|=
T Consensus 87 ~~~L~~~l~~f~~DpSd~~laL~~ll~~-~~~~p~~--~-~l~~~l~~aL~~l~q~~g---~~i~AGiNia~aa~~f~ 157 (246)
T 1xkp_A 87 LSQLXAYLEGXSEEPSEQFXMLCGLRDA-LXGRPEL--A-HLSHLVEQALVSMAEEQG---ETIVLGARITPEAYRES 157 (246)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHH-HHSCGGG--H-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHH-hcCCcch--H-HHHHHHHHHHHHHHHhcC---hhhhhhhhHHHHHHHHh
Confidence 666667788889999998 588888764 1112222 2 667778888777766555 67777776666666554
No 54
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=26.00 E-value=71 Score=32.09 Aligned_cols=84 Identities=12% Similarity=0.208 Sum_probs=58.8
Q ss_pred HHHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHHHHHHHHHHhcccCCChHHHHHHH
Q psy15160 27 SLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLS 106 (366)
Q Consensus 27 S~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~vL~~af~~i~~~~~d~~~~~kv~ 106 (366)
.+++-....-+..++...+++-=++++.|-+.||..+.+|+... . -..|..+++.+|..++ .+.++..-+-..
T Consensus 272 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~---~---~~ef~~i~~~lF~~la-~ci~S~hfqVAE 344 (449)
T 2npp_B 272 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI---E---PSEFVKIMEPLFRQLA-KCVSSPHFQVAE 344 (449)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC---C---HHHHHHHHHHHHHHHH-HHHTCSCHHHHH
T ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC---C---HHHHHHHHHHHHHHHH-HHHcCCCHHHHH
Confidence 33444444444555555544444578888899999999999531 1 2468889999999998 455567778889
Q ss_pred HHHHHhhhCCC
Q psy15160 107 RILNIWEERGV 117 (366)
Q Consensus 107 RIL~IW~eR~V 117 (366)
|.|.+|....+
T Consensus 345 rAL~~w~N~~i 355 (449)
T 2npp_B 345 RALYYWNNEYI 355 (449)
T ss_dssp HHHGGGGCHHH
T ss_pred HHHHHHCCHHH
Confidence 99999987654
No 55
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.27 E-value=47 Score=25.59 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKH 36 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~ 36 (366)
|+|+++...+-|..-+ ..++.+..|++.|...
T Consensus 39 MGF~~~~a~~AL~~t~---~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 39 MGFPENRATKALQLNH---MSVPQAMEWLIEHAED 70 (83)
T ss_dssp HTCCHHHHHHHHHHTT---SCHHHHHHHHHHGGGC
T ss_pred cCCCHHHHHHHHHHhC---CCHHHHHHHHHHCCCC
Confidence 6899999888888643 4799999999998654
No 56
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=24.73 E-value=80 Score=31.32 Aligned_cols=82 Identities=12% Similarity=0.204 Sum_probs=56.9
Q ss_pred HHHhhhccchhHHHHHHHHHHhhcCcccchhHHHHhHHHHHHhhhcCcchHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Q psy15160 28 LWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSR 107 (366)
Q Consensus 28 ~W~l~h~k~a~~IV~~w~~~L~ka~~~kKL~lLYLaNDVlQnskkkg~~f~~~F~~vL~~af~~i~~~~~d~~~~~kv~R 107 (366)
+++-....-+..++...+++-=++++.|-+.||+.+.+|+... . -..|..+.+.+|..++ .+.++..-+-..|
T Consensus 240 qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~---~---~~~f~~i~~~lf~~la-~ci~S~hfqVAEr 312 (403)
T 3fga_B 240 QFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI---E---PSEFVKIMEPLFRQLA-KCVSSPHFQVAER 312 (403)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC---C---HHHHHHHHHHHHHHHH-HHHTCSCHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhC---C---HHHHHHHHHHHHHHHH-HHHCCCCHHHHHH
Confidence 3443344444455554444444588899999999999999531 1 3478899999999988 4545567788889
Q ss_pred HHHHhhhCC
Q psy15160 108 ILNIWEERG 116 (366)
Q Consensus 108 IL~IW~eR~ 116 (366)
-|.+|....
T Consensus 313 AL~~wnNe~ 321 (403)
T 3fga_B 313 ALYYWNNEY 321 (403)
T ss_dssp HHGGGGCHH
T ss_pred HHHHhccHH
Confidence 999996543
No 57
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=24.73 E-value=2.9e+02 Score=23.60 Aligned_cols=7 Identities=0% Similarity=0.026 Sum_probs=2.6
Q ss_pred hHhhhCC
Q psy15160 278 LSKVQGK 284 (366)
Q Consensus 278 L~~Led~ 284 (366)
+..|.+.
T Consensus 48 v~ql~~s 54 (165)
T 1gs9_A 48 QEELLSS 54 (165)
T ss_dssp HHHHHSS
T ss_pred HHHHHhH
Confidence 3333333
No 58
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.68 E-value=36 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKH 36 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~ 36 (366)
|+|+++...+-|..-.+ .+++.+..|++.|...
T Consensus 19 MGF~~~~a~~AL~~t~n--~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 19 MGFPMDACRKAVYYTGN--SGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HSCCHHHHHHHHHHHTS--CCHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHhCC--CCHHHHHHHHHhCCCC
Confidence 58999888888886554 2588999999999754
No 59
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=23.94 E-value=58 Score=26.67 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHR 34 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~ 34 (366)
|+|++....+-|+.-.+ ++..+..|++.|.
T Consensus 18 MGFp~~~~~kAl~~~g~---~~e~amewL~~h~ 47 (118)
T 4ae4_A 18 MGYSYECVLRAMKAAGA---NIEQILDYLFAHG 47 (118)
T ss_dssp TTCCHHHHHHHHHHHCS---CHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCc---CHHHHHHHHHHhc
Confidence 79999999999987765 6999999999884
No 60
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.77 E-value=38 Score=24.68 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKH 36 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~ 36 (366)
|+|+++...+-|..-++ ..++....|++.|...
T Consensus 29 MGF~~~~a~~AL~~t~~--~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 29 MGFPRARAQKALASTGG--RSVQTACDWLFSHSGP 61 (64)
T ss_dssp HTCCHHHHHHHHHHTTT--SCHHHHHHHHHSCCSC
T ss_pred cCCCHHHHHHHHHHcCC--CCHHHHHHHHHhCCCC
Confidence 68999988888886443 2699999999998653
No 61
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.08 E-value=2.5e+02 Score=23.21 Aligned_cols=41 Identities=10% Similarity=0.244 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy15160 302 VNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLE 342 (366)
Q Consensus 302 v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q~~~~~ 342 (366)
..+...+|.+....|.+++++-..+...|...+..-++.+.
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777666666666666655554443
No 62
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=22.99 E-value=3.9e+02 Score=26.00 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15160 293 VAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLK 331 (366)
Q Consensus 293 ~~~~~l~~~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~ 331 (366)
+.+.++++...+--..++.|. .|...++|-..+.+|+.
T Consensus 51 ~~~~~~~ke~~~l~~~v~~~~-~~~~~~~d~~~~~el~~ 88 (365)
T 1gqe_A 51 ERAQALGKERSSLEAVVDTLD-QMKQGLEDVSGLLELAV 88 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 666667666666666666554 34444555555566654
No 63
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.71 E-value=80 Score=22.87 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhcc
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRK 35 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k 35 (366)
|+|+++...+-|..=++ .++.+..|++.|..
T Consensus 19 MGF~~~~a~~AL~~~~~---nve~A~e~L~~~~~ 49 (63)
T 1wji_A 19 MGFSKEASRQALMDNGN---NLEAALNVLLTSNK 49 (63)
T ss_dssp TTCCHHHHHHHHHHTTS---CHHHHHHHHHHHSS
T ss_pred cCCCHHHHHHHHHHhCC---CHHHHHHHHHHCCC
Confidence 68999888887776544 68899999998865
No 64
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=22.62 E-value=60 Score=26.41 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHhhhccch
Q psy15160 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHH 37 (366)
Q Consensus 2 ~~Fse~~l~~kL~~L~~Sq~SIqtlS~W~l~h~k~a 37 (366)
|+|++....+-|..-.++ +++.+..|++.|....
T Consensus 13 MGF~~~~a~~AL~~t~n~--~~e~A~~wL~~~~~d~ 46 (126)
T 2lbc_A 13 MGFPLEACRKAVYFTGNM--GAEVAFNWIIVHMEEP 46 (126)
T ss_dssp TSSCCHHHHHHHHHHTSC--CHHHHHHHHHHGGGCS
T ss_pred cCCCHHHHHHHHHHcCCC--CHHHHHHHHHHhcccc
Confidence 789999999988866553 7999999999997643
No 65
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=22.45 E-value=1.6e+02 Score=23.53 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15160 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQ-------------RELLEQAEQRLEVSETEIFLFLKKFDGE 365 (366)
Q Consensus 301 ~v~ea~~~l~~y~~rL~~e~~~r~~l~~~L~~~~~~q-------------~~~~~~~~~~l~e~~~~~~~~~~~~~~~ 365 (366)
.+++|..-|+.--.|+..+-+-=+.....|++|...+ .++.++-..-+..+..=|.-|-.-||..
T Consensus 6 ~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP~~ 83 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEA 83 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSCGG
T ss_pred cHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHHHCCCc
Confidence 4677777666666666665555577788888998877 3788888888888887777776555543
No 66
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=21.58 E-value=2.8e+02 Score=21.39 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy15160 341 LEQAEQRLEVSETEIFLFLK 360 (366)
Q Consensus 341 ~~~~~~~l~e~~~~~~~~~~ 360 (366)
+...+++++.....|+..+.
T Consensus 77 ~~~~~~~i~~L~~~le~aL~ 96 (104)
T 1t3u_A 77 SSSTRERVRELLDRVDRALA 96 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666553
No 67
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=21.25 E-value=64 Score=26.25 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhhhCC
Q psy15160 76 EYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERG 116 (366)
Q Consensus 76 ~f~~~F~~vL~~af~~i~~~~~d~~~~~kv~RIL~IW~eR~ 116 (366)
.=.+.|..+||+|+..-+ ..+.++.+..+.+|++.-.++.
T Consensus 40 pegk~lK~~lpeAl~t~C-~KCTekQK~~~~kvi~~l~~n~ 79 (109)
T 2gvs_A 40 ADGKELKSVIPDALSNEC-AKCNEKQKEGTKKVLKHLINHK 79 (109)
T ss_dssp TTHHHHHHHTTHHHHSTT-TTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHhccC-CCCCHHHHHHHHHHHHHHHHcC
Confidence 568899999999999988 6788999999999998877665
No 68
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=20.60 E-value=4.5e+02 Score=24.45 Aligned_cols=58 Identities=17% Similarity=0.370 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15160 308 LLTNYNTRLVTEMEDRKRASAMLKDYIAA----------------QRELLEQAEQRLEVSETEIFLFLKKFDGE 365 (366)
Q Consensus 308 ~l~~y~~rL~~e~~~r~~l~~~L~~~~~~----------------q~~~~~~~~~~l~e~~~~~~~~~~~~~~~ 365 (366)
+...|...|+++-+-|.++.+.-+|.+.. -..++.+|+++|++.+..+......++|.
T Consensus 38 ~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~~~~~La~~l~~~ 111 (290)
T 3qb5_K 38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGE 111 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34455555555556666666555554432 23457888899988887777666555553
No 69
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=20.05 E-value=1.7e+02 Score=28.75 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15160 333 YIAAQRELLEQAEQRLEVSETEIFLFL 359 (366)
Q Consensus 333 ~~~~q~~~~~~~~~~l~e~~~~~~~~~ 359 (366)
+...-++-+...+.++++...+|...|
T Consensus 88 ~~~~a~~e~~~l~~~l~~le~~l~~lL 114 (371)
T 1zbt_A 88 LEEMAKEELKNSKVAKEEYEEKLRFLL 114 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566677778887777776655
Done!