Your job contains 1 sequence.
>psy15160
MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM
YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK
QQIASFRTAFNAALEPQTKRRKLSESNTEVLYDVDGNVPIGYFTFFHIDGKGRRNKYDKK
QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLSES
NTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSI
QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLK
KFDGEY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15160
(366 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035318 - symbol:CG9018 species:7227 "Drosophila m... 419 9.9e-60 2
UNIPROTKB|Q5F4B4 - symbol:CREPT "Cell-cycle related and e... 371 1.8e-50 2
UNIPROTKB|A6QLW3 - symbol:RPRD1B "RPRD1B protein" species... 357 2.0e-49 2
UNIPROTKB|E2RRZ8 - symbol:RPRD1B "Uncharacterized protein... 357 2.0e-49 2
UNIPROTKB|Q9NQG5 - symbol:RPRD1B "Regulation of nuclear p... 357 2.0e-49 2
UNIPROTKB|F2Z5H3 - symbol:RPRD1B "Uncharacterized protein... 357 2.0e-49 2
MGI|MGI:1917720 - symbol:Rprd1b "regulation of nuclear pr... 357 2.0e-49 2
RGD|1304782 - symbol:Rprd1b "regulation of nuclear pre-mR... 357 2.8e-42 2
UNIPROTKB|Q0P5J9 - symbol:RPRD1A "Regulation of nuclear p... 351 4.7e-32 1
UNIPROTKB|Q96P16 - symbol:RPRD1A "Regulation of nuclear p... 351 4.7e-32 1
UNIPROTKB|Q5R8Y3 - symbol:RPRD1A "Regulation of nuclear p... 351 4.7e-32 1
UNIPROTKB|I3LT67 - symbol:RPRD1A "Uncharacterized protein... 351 4.7e-32 1
RGD|1307374 - symbol:Rprd1a "regulation of nuclear pre-mR... 349 7.7e-32 1
UNIPROTKB|Q5ZM30 - symbol:RPRD1A "Regulation of nuclear p... 347 1.3e-31 1
UNIPROTKB|F1NQ92 - symbol:RPRD1A "Regulation of nuclear p... 346 1.6e-31 1
MGI|MGI:2385066 - symbol:Rprd1a "regulation of nuclear pr... 346 1.6e-31 1
TAIR|locus:2184113 - symbol:AT5G10060 "AT5G10060" species... 244 1.6e-19 2
WB|WBGene00015347 - symbol:cids-1 species:6239 "Caenorhab... 200 1.0e-18 2
UNIPROTKB|P34281 - symbol:cids-1 "CID domain-containing p... 200 1.0e-18 2
TAIR|locus:2171795 - symbol:AT5G65180 "AT5G65180" species... 240 2.3e-18 1
UNIPROTKB|Q5VT52 - symbol:RPRD2 "Regulation of nuclear pr... 235 1.0e-16 1
ZFIN|ZDB-GENE-030131-6641 - symbol:rprd2a "regulation of ... 232 3.6e-16 2
MGI|MGI:1922387 - symbol:Rprd2 "regulation of nuclear pre... 230 4.2e-16 1
UNIPROTKB|G3MX56 - symbol:RPRD2 "Uncharacterized protein"... 229 5.6e-16 1
UNIPROTKB|I3LG94 - symbol:RPRD2 "Uncharacterized protein"... 225 1.7e-15 1
TAIR|locus:2091990 - symbol:AT3G26990 "AT3G26990" species... 218 2.1e-15 1
CGD|CAL0000943 - symbol:orf19.7662 species:5476 "Candida ... 205 4.0e-15 2
UNIPROTKB|H9L0N7 - symbol:RPRD2 "Uncharacterized protein"... 217 1.5e-14 1
POMBASE|SPBC337.03 - symbol:rhn1 "RNA polymerase II trans... 188 3.4e-12 1
ASPGD|ASPL0000042222 - symbol:AN2049 species:162425 "Emer... 170 4.7e-10 1
SGD|S000002697 - symbol:RTT103 "Protein involved in trans... 139 1.5e-06 1
WB|WBGene00009451 - symbol:cids-2 species:6239 "Caenorhab... 135 8.8e-06 1
>FB|FBgn0035318 [details] [associations]
symbol:CG9018 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:AE014296 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
KO:K15559 OMA:KKKGPEY UniGene:Dm.12912 GeneID:38283
KEGG:dme:Dmel_CG9018 FlyBase:FBgn0035318 GenomeRNAi:38283
NextBio:807847 RefSeq:NP_647701.1 ProteinModelPortal:Q9W039
SMR:Q9W039 PRIDE:Q9W039 EnsemblMetazoa:FBtr0072910 UCSC:CG9018-RA
InParanoid:Q9W039 PhylomeDB:Q9W039 ArrayExpress:Q9W039 Bgee:Q9W039
Uniprot:Q9W039
Length = 375
Score = 419 (152.6 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 82/128 (64%), Positives = 98/128 (76%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ FT SAL+ KL ELN+SQQSIQTLSLWLIHHRKH + IV+TW E+E + +KLT M
Sbjct: 1 MSAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELENVPEPKKLTFM 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSKKKGPEYGKE+ VL + F +G+ S+K SL RILNIW ERGVYD
Sbjct: 61 YLANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDKLLGSLGRILNIWLERGVYDP 120
Query: 121 QQIASFRT 128
+ IA +R+
Sbjct: 121 KTIADWRS 128
Score = 211 (79.3 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 46/91 (50%), Positives = 65/91 (71%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
E++ + +E SASSDA +RE+IAKLP E+SEI +SK++ K D+ A+ L+IQV
Sbjct: 227 ELIRALTSIENSASSDAVVRERIAKLPQEISEISCISKLEDK------DK--AKELAIQV 278
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAMLKDY 333
NEAVDLL +YN RL EME+R + + ML+D+
Sbjct: 279 NEAVDLLNDYNARLAAEMEERSKLATMLRDF 309
Score = 103 (41.3 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRT 222
+ F +G+ S+K SL RILNIW ERGVYD + IA +R+
Sbjct: 87 KVFAHIGEKCNSDKLLGSLGRILNIWLERGVYDPKTIADWRS 128
>UNIPROTKB|Q5F4B4 [details] [associations]
symbol:CREPT "Cell-cycle related and expression-elevated
protein in tumor" species:9031 "Gallus gallus" [GO:0000993 "RNA
polymerase II core binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0010564
"regulation of cell cycle process" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0070940
"dephosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] GO:GO:0008284 GO:GO:0045944 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOGENOM:HOG000007456 HOVERGEN:HBG051177
CTD:58490 OrthoDB:EOG4255TB EMBL:AADN02019053 EMBL:DQ372940
EMBL:AJ851386 IPI:IPI00651204 RefSeq:NP_001026033.1
UniGene:Gga.16262 Ensembl:ENSGALT00000010979 GeneID:419295
KEGG:gga:419295 InParanoid:Q5F4B4 NextBio:20822377 Uniprot:Q5F4B4
Length = 325
Score = 371 (135.7 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 79/165 (47%), Positives = 101/165 (61%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSSRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGS 119
Query: 121 QQIASFRTAFNAALEPQTKRRK---LSESNTEVLYDVDGNVPIGY 162
+ I + + + PQTK K L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSNSPQTKEEKKSSLKRTFQQIQEEEDDDYPGSY 164
Score = 171 (65.3 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 39/91 (42%), Positives = 57/91 (62%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
+++ + +LE +AS DA +R+KIA LP EV ++ LL K+ D+ AAE LS V
Sbjct: 178 DLIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKIT--------DKEAAERLSKTV 229
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAMLKDY 333
+EA LL YN RL E+EDR++ + ML +Y
Sbjct: 230 DEACLLLAEYNGRLAAELEDRRQLARMLIEY 260
Score = 90 (36.7 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 193 EKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLS 238
E + L R+LNIW+ER VY + I + + + PQTK K S
Sbjct: 98 EGCKKPLERLLNIWQERSVYGSEFIQQLKLSMEDSNSPQTKEEKKS 143
>UNIPROTKB|A6QLW3 [details] [associations]
symbol:RPRD1B "RPRD1B protein" species:9913 "Bos taurus"
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0010564 "regulation of cell cycle process"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 GeneTree:ENSGT00400000022016
KO:K15559 OMA:KKKGPEY GO:GO:0010564 GO:GO:0070940
HOGENOM:HOG000007456 HOVERGEN:HBG051177 CTD:58490 OrthoDB:EOG4255TB
EMBL:DAAA02036557 EMBL:DAAA02036558 EMBL:BC148107 IPI:IPI00703778
RefSeq:NP_001094604.1 UniGene:Bt.29916 SMR:A6QLW3
Ensembl:ENSBTAT00000006703 GeneID:529700 KEGG:bta:529700
InParanoid:A6QLW3 NextBio:20875086 Uniprot:A6QLW3
Length = 326
Score = 357 (130.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 76/166 (45%), Positives = 101/166 (60%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGG 119
Query: 121 QQIASFRTAFNAALEPQTK----RRKLSESNTEVLYDVDGNVPIGY 162
+ I + + + P K ++ L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSY 165
Score = 175 (66.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
E++ + +LE +AS DA +R+KIA LP EV ++ LL K+ D+ AAE LS V
Sbjct: 179 ELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKIT--------DKEAAERLSKTV 230
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAMLKDY 333
+EA LL YN RL E+EDR++ + ML +Y
Sbjct: 231 DEACLLLAEYNGRLAAELEDRRQLARMLVEY 261
>UNIPROTKB|E2RRZ8 [details] [associations]
symbol:RPRD1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070940 "dephosphorylation of RNA polymerase
II C-terminal domain" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA] [GO:0010564 "regulation of cell cycle
process" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 CTD:58490 EMBL:AAEX03013924
RefSeq:XP_542990.3 ProteinModelPortal:E2RRZ8 SMR:E2RRZ8
PRIDE:E2RRZ8 Ensembl:ENSCAFT00000014042 GeneID:485866
KEGG:cfa:485866 NextBio:20859769 Uniprot:E2RRZ8
Length = 326
Score = 357 (130.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 76/166 (45%), Positives = 101/166 (60%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGG 119
Query: 121 QQIASFRTAFNAALEPQTK----RRKLSESNTEVLYDVDGNVPIGY 162
+ I + + + P K ++ L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSY 165
Score = 175 (66.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
E++ + +LE +AS DA +R+KIA LP EV ++ LL K+ D+ AAE LS V
Sbjct: 179 ELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKIT--------DKEAAERLSKTV 230
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAMLKDY 333
+EA LL YN RL E+EDR++ + ML +Y
Sbjct: 231 DEACLLLAEYNGRLAAELEDRRQLARMLVEY 261
>UNIPROTKB|Q9NQG5 [details] [associations]
symbol:RPRD1B "Regulation of nuclear pre-mRNA
domain-containing protein 1B" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0010564 "regulation of cell cycle
process" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000993 "RNA polymerase II core binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] EMBL:CH471077
GO:GO:0008284 GO:GO:0045944 GO:GO:0006351 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 GO:GO:0000993
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOGENOM:HOG000007456 HOVERGEN:HBG051177
EMBL:DQ372938 EMBL:AK312468 EMBL:AL109823 EMBL:BC001696
EMBL:BC033629 IPI:IPI00009659 RefSeq:NP_067038.1 UniGene:Hs.278839
PDB:4FLA PDB:4FU3 PDB:4HFG PDBsum:4FLA PDBsum:4FU3 PDBsum:4HFG
ProteinModelPortal:Q9NQG5 SMR:Q9NQG5 IntAct:Q9NQG5
MINT:MINT-1475221 STRING:Q9NQG5 PhosphoSite:Q9NQG5 DMDM:23813907
PaxDb:Q9NQG5 PeptideAtlas:Q9NQG5 PRIDE:Q9NQG5 DNASU:58490
Ensembl:ENST00000373433 GeneID:58490 KEGG:hsa:58490 UCSC:uc002xho.4
CTD:58490 GeneCards:GC20P036662 H-InvDB:HIX0015799 HGNC:HGNC:16209
MIM:614694 neXtProt:NX_Q9NQG5 PharmGKB:PA162402043
InParanoid:Q9NQG5 OrthoDB:EOG4255TB PhylomeDB:Q9NQG5 ChiTaRS:RPRD1B
GenomeRNAi:58490 NextBio:64964 ArrayExpress:Q9NQG5 Bgee:Q9NQG5
CleanEx:HS_RPRD1B Genevestigator:Q9NQG5 GermOnline:ENSG00000101413
Uniprot:Q9NQG5
Length = 326
Score = 357 (130.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 76/166 (45%), Positives = 101/166 (60%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGG 119
Query: 121 QQIASFRTAFNAALEPQTK----RRKLSESNTEVLYDVDGNVPIGY 162
+ I + + + P K ++ L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSY 165
Score = 175 (66.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
E++ + +LE +AS DA +R+KIA LP EV ++ LL K+ D+ AAE LS V
Sbjct: 179 ELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKIT--------DKEAAERLSKTV 230
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAMLKDY 333
+EA LL YN RL E+EDR++ + ML +Y
Sbjct: 231 DEACLLLAEYNGRLAAELEDRRQLARMLVEY 261
>UNIPROTKB|F2Z5H3 [details] [associations]
symbol:RPRD1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0010564 "regulation of cell cycle process"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 CTD:58490 EMBL:CU467005
EMBL:AEMK01197352 RefSeq:XP_001925742.2 UniGene:Ssc.11514
ProteinModelPortal:F2Z5H3 SMR:F2Z5H3 PRIDE:F2Z5H3
Ensembl:ENSSSCT00000008034 GeneID:100157347 KEGG:ssc:100157347
Uniprot:F2Z5H3
Length = 326
Score = 357 (130.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 76/166 (45%), Positives = 101/166 (60%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGG 119
Query: 121 QQIASFRTAFNAALEPQTK----RRKLSESNTEVLYDVDGNVPIGY 162
+ I + + + P K ++ L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSY 165
Score = 175 (66.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
E++ + +LE +AS DA +R+KIA LP EV ++ LL K+ D+ AAE LS V
Sbjct: 179 ELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKIT--------DKEAAERLSKTV 230
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAMLKDY 333
+EA LL YN RL E+EDR++ + ML +Y
Sbjct: 231 DEACLLLAEYNGRLAAELEDRRQLARMLVEY 261
>MGI|MGI:1917720 [details] [associations]
symbol:Rprd1b "regulation of nuclear pre-mRNA domain
containing 1B" species:10090 "Mus musculus" [GO:0000993 "RNA
polymerase II core binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=ISO] [GO:0010564 "regulation of cell
cycle process" evidence=ISO] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=ISO] MGI:MGI:1917720 GO:GO:0008284
GO:GO:0045944 GO:GO:0006351 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 GO:GO:0000993 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOVERGEN:HBG051177 CTD:58490
ChiTaRS:RPRD1B EMBL:DQ372939 EMBL:AK011979 EMBL:AK139995
EMBL:AK147718 EMBL:AK147930 EMBL:AK152125 EMBL:AK152220
EMBL:AL669824 EMBL:BC028819 EMBL:BC042447 EMBL:BC054350
IPI:IPI00338515 IPI:IPI00653738 IPI:IPI00752391 RefSeq:NP_081710.1
UniGene:Mm.290810 ProteinModelPortal:Q9CSU0 SMR:Q9CSU0
PhosphoSite:Q9CSU0 PaxDb:Q9CSU0 PRIDE:Q9CSU0
Ensembl:ENSMUST00000029180 Ensembl:ENSMUST00000103123
Ensembl:ENSMUST00000109518 Ensembl:ENSMUST00000152452 GeneID:70470
KEGG:mmu:70470 UCSC:uc008npl.1 UCSC:uc008npm.1 UCSC:uc008npn.1
InParanoid:Q9CSU0 NextBio:331695 Bgee:Q9CSU0 Genevestigator:Q9CSU0
GermOnline:ENSMUSG00000027651 Uniprot:Q9CSU0
Length = 326
Score = 357 (130.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 76/166 (45%), Positives = 101/166 (60%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGG 119
Query: 121 QQIASFRTAFNAALEPQTK----RRKLSESNTEVLYDVDGNVPIGY 162
+ I + + + P K ++ L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSKSPPPKAAEEKKSLKRTFQQIQEEEDDDYPGSY 165
Score = 175 (66.7 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
E++ + +LE +AS DA +R+KIA LP EV ++ LL K+ D+ AAE LS V
Sbjct: 179 ELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKIT--------DKEAAERLSKTV 230
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAMLKDY 333
+EA LL YN RL E+EDR++ + ML +Y
Sbjct: 231 DEACLLLAEYNGRLAAELEDRRQLARMLVEY 261
>RGD|1304782 [details] [associations]
symbol:Rprd1b "regulation of nuclear pre-mRNA domain containing
1B" species:10116 "Rattus norvegicus" [GO:0000993 "RNA polymerase
II core binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO] [GO:0010564 "regulation of cell cycle process"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISO] RGD:1304782 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
IPI:IPI00777493 Ensembl:ENSRNOT00000055214 UCSC:RGD:1304782
ArrayExpress:D3ZA87 Uniprot:D3ZA87
Length = 224
Score = 357 (130.7 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 76/166 (45%), Positives = 101/166 (60%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGG 119
Query: 121 QQIASFRTAFNAALEPQTK----RRKLSESNTEVLYDVDGNVPIGY 162
+ I + + + P K ++ L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSKSPPPKAAEEKKSLKRTFQQIQEEEDDDYPGSY 165
Score = 107 (42.7 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNI 286
E++ + +LE +AS DA +R+KIA LP EV ++ LL K+ G+ +
Sbjct: 179 ELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITGEKV 222
>UNIPROTKB|Q0P5J9 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9913 "Bos taurus" [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=ISS]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISS] Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 GO:GO:0070940 EMBL:BC119944
IPI:IPI00697180 IPI:IPI00876797 RefSeq:NP_001068624.1
UniGene:Bt.74401 ProteinModelPortal:Q0P5J9 SMR:Q0P5J9 PRIDE:Q0P5J9
Ensembl:ENSBTAT00000007226 Ensembl:ENSBTAT00000056481 GeneID:504355
KEGG:bta:504355 CTD:55197 HOGENOM:HOG000007456 HOVERGEN:HBG051177
InParanoid:Q0P5J9 OMA:SDFLRCQ OrthoDB:EOG4F4SBP NextBio:20866621
Uniprot:Q0P5J9
Length = 312
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 69/139 (49%), Positives = 92/139 (66%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAFNAALEPQTK 139
+ + A +P+ +
Sbjct: 120 DVLEQLKQALYGDKKPRKR 138
Score = 195 (73.7 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 53/171 (30%), Positives = 87/171 (50%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTK---RRKL 237
+AF V E + L R+L+IWEER VY+ + + A +P+ + + K+
Sbjct: 87 EAFKHVSS-ETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYEQIKV 145
Query: 238 SESNT--------------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQG 283
E+ +++ + +LE +AS DA + ++IA LP EV E+ LL K+
Sbjct: 146 DENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKIT- 204
Query: 284 KNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334
D+ + E LS V +A LL +YN RL E++DRK+ + ML D++
Sbjct: 205 -------DKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFL 248
>UNIPROTKB|Q96P16 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9606 "Homo sapiens"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IMP] EMBL:CH471088 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GO:GO:0070940 CTD:55197 HOGENOM:HOG000007456
HOVERGEN:HBG051177 OMA:SDFLRCQ OrthoDB:EOG4F4SBP EMBL:AF419845
EMBL:AK001518 EMBL:AK292907 EMBL:AK314569 EMBL:BC000225
EMBL:BC010136 IPI:IPI00062336 IPI:IPI00102425 IPI:IPI00385260
RefSeq:NP_060640.2 UniGene:Hs.464912 ProteinModelPortal:Q96P16
SMR:Q96P16 IntAct:Q96P16 STRING:Q96P16 PhosphoSite:Q96P16
DMDM:74717048 PaxDb:Q96P16 PRIDE:Q96P16 DNASU:55197
Ensembl:ENST00000319040 Ensembl:ENST00000337059
Ensembl:ENST00000357384 Ensembl:ENST00000399022 GeneID:55197
KEGG:hsa:55197 UCSC:uc002kze.1 UCSC:uc002kzg.3 UCSC:uc010dmx.3
GeneCards:GC18M033569 H-InvDB:HIX0014404 HGNC:HGNC:25560
HPA:HPA040602 MIM:610347 neXtProt:NX_Q96P16 PharmGKB:PA162402042
InParanoid:Q96P16 PhylomeDB:Q96P16 ChiTaRS:RPRD1A GenomeRNAi:55197
NextBio:59071 Bgee:Q96P16 CleanEx:HS_RPRD1A Genevestigator:Q96P16
Uniprot:Q96P16
Length = 312
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 69/139 (49%), Positives = 92/139 (66%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAFNAALEPQTK 139
+ + A +P+ +
Sbjct: 120 DVLEQLKQALYGDKKPRKR 138
Score = 195 (73.7 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 53/171 (30%), Positives = 87/171 (50%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTK---RRKL 237
+AF V E + L R+L+IWEER VY+ + + A +P+ + + K+
Sbjct: 87 EAFKHVSS-ETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYEQIKV 145
Query: 238 SESNT--------------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQG 283
E+ +++ + +LE +AS DA + ++IA LP EV E+ LL K+
Sbjct: 146 DENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKIT- 204
Query: 284 KNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334
D+ + E LS V +A LL +YN RL E++DRK+ + ML D++
Sbjct: 205 -------DKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFL 248
>UNIPROTKB|Q5R8Y3 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9601 "Pongo abelii"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=ISS] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=ISS] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 CTD:55197
HOVERGEN:HBG051177 OMA:SDFLRCQ EMBL:CR859614 RefSeq:NP_001126030.1
UniGene:Pab.876 ProteinModelPortal:Q5R8Y3 SMR:Q5R8Y3 PRIDE:Q5R8Y3
Ensembl:ENSPPYT00000010637 Ensembl:ENSPPYT00000033804
GeneID:100172978 KEGG:pon:100172978 InParanoid:Q5R8Y3
Uniprot:Q5R8Y3
Length = 312
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 69/139 (49%), Positives = 92/139 (66%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAFNAALEPQTK 139
+ + A +P+ +
Sbjct: 120 DVLEQLKQALYGDKKPRKR 138
Score = 195 (73.7 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 53/171 (30%), Positives = 87/171 (50%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTK---RRKL 237
+AF V E + L R+L+IWEER VY+ + + A +P+ + + K+
Sbjct: 87 EAFKHVSS-ETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYEQIKV 145
Query: 238 SESNT--------------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQG 283
E+ +++ + +LE +AS DA + ++IA LP EV E+ LL K+
Sbjct: 146 DENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKIT- 204
Query: 284 KNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334
D+ + E LS V +A LL +YN RL E++DRK+ + ML D++
Sbjct: 205 -------DKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFL 248
>UNIPROTKB|I3LT67 [details] [associations]
symbol:RPRD1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=IEA] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 OMA:SDFLRCQ
EMBL:FP325286 RefSeq:XP_003356459.1 Ensembl:ENSSSCT00000028030
GeneID:100621319 KEGG:ssc:100621319 Uniprot:I3LT67
Length = 312
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 69/139 (49%), Positives = 92/139 (66%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAFNAALEPQTK 139
+ + A +P+ +
Sbjct: 120 DVLEQLKQALYGDKKPRKR 138
Score = 191 (72.3 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTK---RRKL 237
+AF V E + L R+L+IWEER VY+ + + A +P+ + + ++
Sbjct: 87 EAFKHVSS-ETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYEQIQV 145
Query: 238 SESNT--------------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQG 283
E+ +++ + +LE +AS DA + ++IA LP EV E+ LL K+
Sbjct: 146 DENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKIT- 204
Query: 284 KNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334
D+ + E LS V +A LL +YN RL E++DRK+ + ML D++
Sbjct: 205 -------DKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFL 248
>RGD|1307374 [details] [associations]
symbol:Rprd1a "regulation of nuclear pre-mRNA domain containing
1A" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA;ISO] [GO:0070940 "dephosphorylation of RNA polymerase
II C-terminal domain" evidence=IEA;ISO] RGD:1307374
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 GO:GO:0070940
CTD:55197 OMA:SDFLRCQ OrthoDB:EOG4F4SBP IPI:IPI00763121
RefSeq:XP_001056597.3 RefSeq:XP_214609.6 PRIDE:D4AAU4
Ensembl:ENSRNOT00000021624 GeneID:291736 KEGG:rno:291736
UCSC:RGD:1307374 Uniprot:D4AAU4
Length = 312
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 70/141 (49%), Positives = 94/141 (66%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAFNAALEPQTKRR 141
+ + A + +T++R
Sbjct: 120 DVLEQLKHALYG--DKKTRKR 138
Score = 191 (72.3 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 54/173 (31%), Positives = 88/173 (50%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRR----- 235
+AF V E + L R+L+IWEER VY+ + + A + +T++R
Sbjct: 87 EAFKHVSS-ETDESCKKHLGRVLSIWEERSVYENDVLEQLKHALYG--DKKTRKRTYEQI 143
Query: 236 KLSESNT--------------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKV 281
K+ E+ +++ + +LE +AS DA + ++IA LP EV E+ LL K+
Sbjct: 144 KVDENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLEKI 203
Query: 282 QGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334
D+ + E LS V +A LL +YN RL E++DRK+ + ML D++
Sbjct: 204 T--------DKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFL 248
>UNIPROTKB|Q5ZM30 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9031 "Gallus gallus"
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GO:GO:0070940 CTD:55197 HOGENOM:HOG000007456 HOVERGEN:HBG051177
EMBL:AJ719554 IPI:IPI00681392 RefSeq:NP_001026176.1
UniGene:Gga.12933 ProteinModelPortal:Q5ZM30 GeneID:420953
KEGG:gga:420953 NextBio:20823795 Uniprot:Q5ZM30
Length = 268
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 72/150 (48%), Positives = 98/150 (65%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH + IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ESDESCKKHPGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAF--NAALEPQTKRR-KLSESN 147
+ R A + + +T + K+ E+N
Sbjct: 120 DVLEQLRQALYGDRKVRKRTYEQIKVDENN 149
Score = 192 (72.6 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 53/170 (31%), Positives = 88/170 (51%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAF--NAALEPQTKRR-KL 237
+AF V E + R+L+IWEER VY+ + R A + + +T + K+
Sbjct: 87 EAFKHVSS-ESDESCKKHPGRVLSIWEERSVYENDVLEQLRQALYGDRKVRKRTYEQIKV 145
Query: 238 SESNT-------------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGK 284
E+N +++ + ELE +AS DA + ++IA LP EV ++ LL ++
Sbjct: 146 DENNCSPRSSPTDPPQTMDLIRALQELENAASGDAAVHQRIASLPIEVQDVSLLDRIT-- 203
Query: 285 NITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334
D+ + E LS V++A LL +YN RL E++DRK+ + ML D++
Sbjct: 204 ------DKESGEQLSKMVDDACMLLADYNGRLAAEIDDRKQLTRMLSDFL 247
>UNIPROTKB|F1NQ92 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9031 "Gallus gallus"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 OMA:SDFLRCQ
EMBL:AADN02008126 IPI:IPI00579554 Ensembl:ENSGALT00000021433
ArrayExpress:F1NQ92 Uniprot:F1NQ92
Length = 321
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 73/151 (48%), Positives = 100/151 (66%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEK-ADDHRKLTL 59
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH + IV W E+ K A +RKLT
Sbjct: 10 MSAFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKVAKPNRKLTF 69
Query: 60 MYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYD 119
+YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 70 LYLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ESDESCKKHLGRVLSIWEERSVYE 128
Query: 120 KQQIASFRTAF--NAALEPQTKRR-KLSESN 147
+ R A + ++ +T + K+ E+N
Sbjct: 129 NDVLEQLRQALYGDRKVKKRTYEQIKVDENN 159
Score = 200 (75.5 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 54/170 (31%), Positives = 90/170 (52%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAF--NAALEPQTKRR-KL 237
+AF V E + L R+L+IWEER VY+ + R A + ++ +T + K+
Sbjct: 97 EAFKHVSS-ESDESCKKHLGRVLSIWEERSVYENDVLEQLRQALYGDRKVKKRTYEQIKV 155
Query: 238 SESNT-------------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGK 284
E+N +++ + ELE +AS DA + ++IA LP EV ++ LL ++
Sbjct: 156 DENNCSPRSSPTDPPQTMDLIRALQELENAASGDAAVHQRIASLPIEVQDVSLLDRIT-- 213
Query: 285 NITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334
D+ + E LS V++A LL +YN RL E++DRK+ + ML D++
Sbjct: 214 ------DKESGEQLSKMVDDACMLLADYNGRLAAEIDDRKQLTRMLSDFL 257
>MGI|MGI:2385066 [details] [associations]
symbol:Rprd1a "regulation of nuclear pre-mRNA domain
containing 1A" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=ISO] [GO:0070940
"dephosphorylation of RNA polymerase II C-terminal domain"
evidence=ISO] MGI:MGI:2385066 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 GO:GO:0070940 CTD:55197
HOGENOM:HOG000007456 HOVERGEN:HBG051177 OMA:SDFLRCQ
OrthoDB:EOG4F4SBP EMBL:AK220475 EMBL:BC021395 EMBL:BC023084
IPI:IPI00123724 RefSeq:NP_659110.1 UniGene:Mm.28427
ProteinModelPortal:Q8VDS4 SMR:Q8VDS4 PhosphoSite:Q8VDS4
PaxDb:Q8VDS4 PRIDE:Q8VDS4 Ensembl:ENSMUST00000046206 GeneID:225283
KEGG:mmu:225283 UCSC:uc008egu.1 InParanoid:Q8VDS4 NextBio:377605
Bgee:Q8VDS4 Genevestigator:Q8VDS4 Uniprot:Q8VDS4
Length = 312
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 68/129 (52%), Positives = 88/129 (68%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTA 129
+ + A
Sbjct: 120 DVLEQLKHA 128
Score = 188 (71.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 53/171 (30%), Positives = 86/171 (50%)
Query: 181 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAF---NAALEPQTKRRKL 237
+AF V E + L R+L+IWEER VY+ + + A A + ++ K+
Sbjct: 87 EAFKHVSS-ETDESCKKHLGRVLSIWEERSVYENDVLEQLKHALYGDKKARKRTYEQIKV 145
Query: 238 SESNT--------------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQG 283
E+ +++ + +LE +AS DA + ++IA LP EV E+ LL K+
Sbjct: 146 DENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLEKIT- 204
Query: 284 KNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYI 334
D+ + E LS V +A LL +YN RL E++DRK+ + ML D++
Sbjct: 205 -------DKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFL 248
>TAIR|locus:2184113 [details] [associations]
symbol:AT5G10060 "AT5G10060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
"extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
KO:K15559 HOGENOM:HOG000029886 EMBL:BT002418 EMBL:BT020375
IPI:IPI00535494 RefSeq:NP_196568.2 UniGene:At.28106
ProteinModelPortal:Q8GUK8 SMR:Q8GUK8 IntAct:Q8GUK8 PRIDE:Q8GUK8
EnsemblPlants:AT5G10060.1 GeneID:830870 KEGG:ath:AT5G10060
TAIR:At5g10060 InParanoid:Q8GUK8 OMA:TITETND PhylomeDB:Q8GUK8
ProtClustDB:CLSN2690086 Genevestigator:Q8GUK8 Uniprot:Q8GUK8
Length = 469
Score = 244 (91.0 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 52/118 (44%), Positives = 78/118 (66%)
Query: 4 FTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLA 63
F+ LI KL +LN+SQQSI+TLS W I +R IV TW + + +K+ L+YLA
Sbjct: 5 FSDQILIDKLAKLNSSQQSIETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPLLYLA 64
Query: 64 NDVIQNSKKKGPEYGKEFGHVLKQAF---VSVGDVHCSEKTRSSLSRILNIWEERGVY 118
ND++QNSK++G E+ +EF +VL +A VS GD + +S+++R++ IWEER V+
Sbjct: 65 NDILQNSKRQGNEFVQEFWNVLPKALKDIVSQGD----DNGKSAVARVIKIWEERRVF 118
Score = 39 (18.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 20/104 (19%), Positives = 39/104 (37%)
Query: 229 EPQTKRRKLSESNTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITG 288
E ++ R KL+ S + ++N ++ K V I+ + K + +
Sbjct: 154 ESKSSRTKLASSGGVAEKIASAYHLVVAENSNEEAEMNKCKSAVKRIRKMEKDVEEACST 213
Query: 289 QPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKD 332
D ++L+ ++ E LL +L + R LKD
Sbjct: 214 AKDNPKRKSLAKELEEEEYLLRQCIEKLKSVQGSRSSLVNQLKD 257
>WB|WBGene00015347 [details] [associations]
symbol:cids-1 species:6239 "Caenorhabditis elegans"
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0040027 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
EMBL:FO080288 PIR:S44606 RefSeq:NP_498807.2
ProteinModelPortal:P34281 SMR:P34281 PaxDb:P34281
EnsemblMetazoa:C02F5.4 GeneID:176162 KEGG:cel:CELE_C02F5.4
CTD:176162 WormBase:C02F5.4 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 InParanoid:P34281 KO:K15559
OMA:KKKGPEY NextBio:891390 GO:GO:0031124 Uniprot:P34281
Length = 315
Score = 200 (75.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 37/123 (30%), Positives = 71/123 (57%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLT-L 59
MA FT+ L KL L+ SIQT S WL+ + + I++ W+ V+K K+ L
Sbjct: 1 MADFTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVNL 60
Query: 60 MYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYD 119
+Y+ANDV QN++K P++ EF ++ +F ++ +++ ++ +++N+W++R ++
Sbjct: 61 LYVANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEVEHAIGKLINVWKDRQIFT 120
Query: 120 KQQ 122
Q
Sbjct: 121 PSQ 123
Score = 77 (32.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
+VL + L+ S++ IR +++K P +S + L V+ A++L +Q
Sbjct: 170 DVLLSLKRLQNPPSTEREIRTELSKYPDNISCPEKLQSVRSSQ--------EAQSLLVQN 221
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAML 330
EA+ +L Y RL E +R+ + L
Sbjct: 222 EEALPMLEEYVKRLKNETNERETLESNL 249
>UNIPROTKB|P34281 [details] [associations]
symbol:cids-1 "CID domain-containing protein 1"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0040027
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:FO080288 PIR:S44606 RefSeq:NP_498807.2
ProteinModelPortal:P34281 SMR:P34281 PaxDb:P34281
EnsemblMetazoa:C02F5.4 GeneID:176162 KEGG:cel:CELE_C02F5.4
CTD:176162 WormBase:C02F5.4 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 InParanoid:P34281 KO:K15559
OMA:KKKGPEY NextBio:891390 GO:GO:0031124 Uniprot:P34281
Length = 315
Score = 200 (75.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 37/123 (30%), Positives = 71/123 (57%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLT-L 59
MA FT+ L KL L+ SIQT S WL+ + + I++ W+ V+K K+ L
Sbjct: 1 MADFTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVNL 60
Query: 60 MYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYD 119
+Y+ANDV QN++K P++ EF ++ +F ++ +++ ++ +++N+W++R ++
Sbjct: 61 LYVANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEVEHAIGKLINVWKDRQIFT 120
Query: 120 KQQ 122
Q
Sbjct: 121 PSQ 123
Score = 77 (32.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 243 EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSIQV 302
+VL + L+ S++ IR +++K P +S + L V+ A++L +Q
Sbjct: 170 DVLLSLKRLQNPPSTEREIRTELSKYPDNISCPEKLQSVRSSQ--------EAQSLLVQN 221
Query: 303 NEAVDLLTNYNTRLVTEMEDRKRASAML 330
EA+ +L Y RL E +R+ + L
Sbjct: 222 EEALPMLEEYVKRLKNETNERETLESNL 249
>TAIR|locus:2171795 [details] [associations]
symbol:AT5G65180 "AT5G65180" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007059 "chromosome segregation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0032204 "regulation of telomere maintenance"
evidence=RCA] [GO:0032504 "multicellular organism reproduction"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0045132 "meiotic
chromosome segregation" evidence=RCA] EMBL:CP002688 EMBL:AB013395
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 KO:K15559 UniGene:At.49809 HOGENOM:HOG000029886
ProtClustDB:CLSN2690086 EMBL:AY034943 EMBL:AY063122 IPI:IPI00544106
RefSeq:NP_569007.1 UniGene:At.9292 ProteinModelPortal:Q9FJP7
SMR:Q9FJP7 PRIDE:Q9FJP7 EnsemblPlants:AT5G65180.1 GeneID:836642
KEGG:ath:AT5G65180 TAIR:At5g65180 InParanoid:Q9FJP7 OMA:NEETEMN
PhylomeDB:Q9FJP7 ArrayExpress:Q9FJP7 Genevestigator:Q9FJP7
Uniprot:Q9FJP7
Length = 439
Score = 240 (89.5 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 52/118 (44%), Positives = 75/118 (63%)
Query: 4 FTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLA 63
F++ LI L +LN++QQSIQTLS W I HR +V TW + +K+ L+YLA
Sbjct: 5 FSEEILIDNLAKLNSTQQSIQTLSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPLLYLA 64
Query: 64 NDVIQNSKKKGPEYGKEFGHVLKQAF---VSVGDVHCSEKTRSSLSRILNIWEERGVY 118
ND++QNSK++G E+ +EF VL A VS+GD + + +SR++NIWEER V+
Sbjct: 65 NDILQNSKRQGNEFVQEFWKVLPGALKDIVSLGD----DYGKGVVSRLVNIWEERRVF 118
>UNIPROTKB|Q5VT52 [details] [associations]
symbol:RPRD2 "Regulation of nuclear pre-mRNA
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] EMBL:CH471121 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 EMBL:AL356356 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG331230 EMBL:AL611942 EMBL:AK056707 EMBL:AK291703
EMBL:BX641025 EMBL:BX284695 EMBL:BC045623 EMBL:AF161362
EMBL:AB007929 IPI:IPI00384541 IPI:IPI00639879 IPI:IPI00647267
IPI:IPI00760919 PIR:T00074 RefSeq:NP_056018.2 UniGene:Hs.213666
PDB:4FLB PDBsum:4FLB ProteinModelPortal:Q5VT52 SMR:Q5VT52
IntAct:Q5VT52 MINT:MINT-1603162 PhosphoSite:Q5VT52 DMDM:74746888
PaxDb:Q5VT52 PRIDE:Q5VT52 DNASU:23248 Ensembl:ENST00000369067
Ensembl:ENST00000369068 Ensembl:ENST00000401000
Ensembl:ENST00000579067 Ensembl:ENST00000584319
Ensembl:ENST00000584841 GeneID:23248 KEGG:hsa:23248 UCSC:uc001eup.4
UCSC:uc009wlr.3 CTD:23248 GeneCards:GC01P150335 H-InvDB:HIX0019981
HGNC:HGNC:29039 HPA:HPA045778 MIM:614695 neXtProt:NX_Q5VT52
PharmGKB:PA162402062 HOVERGEN:HBG104176 InParanoid:Q5VT52
OMA:GKGNRGH ChiTaRS:RPRD2 GenomeRNAi:23248 NextBio:44942
ArrayExpress:Q5VT52 Bgee:Q5VT52 CleanEx:HS_RPRD2
Genevestigator:Q5VT52 GermOnline:ENSG00000163125 Uniprot:Q5VT52
Length = 1461
Score = 235 (87.8 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 54/142 (38%), Positives = 81/142 (57%)
Query: 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMY 61
AG +S+L K + + + +SIQ LS W I ++KHHSTIV W+ + ++ +L L Y
Sbjct: 20 AGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFY 79
Query: 62 LANDVIQNSKKKGPEYGKE-FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
LANDVIQN K+K +E F VL +A V D S+ S+ RI IWE+R VY +
Sbjct: 80 LANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSK----SVERIFKIWEDRNVYPE 135
Query: 121 QQIASFRTAFNAALEPQTKRRK 142
+ I + R A + + Q + ++
Sbjct: 136 EMIVALREALSTTFKTQKQLKE 157
>ZFIN|ZDB-GENE-030131-6641 [details] [associations]
symbol:rprd2a "regulation of nuclear pre-mRNA
domain containing 2a" species:7955 "Danio rerio" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-030131-6641 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 EMBL:BC056830 IPI:IPI00502548
RefSeq:NP_956216.1 UniGene:Dr.80327 ProteinModelPortal:Q6PGU3
PRIDE:Q6PGU3 GeneID:334701 KEGG:dre:334701 CTD:334701
HOVERGEN:HBG097713 InParanoid:Q6PGU3 NextBio:20810517 Bgee:Q6PGU3
Uniprot:Q6PGU3
Length = 1113
Score = 232 (86.7 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 52/132 (39%), Positives = 75/132 (56%)
Query: 6 QSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLAND 65
+S L + + ++ + +SIQ LS W I ++K HS IVK WI + K+D +L L YLAND
Sbjct: 20 ESTLDRRFQTVSNTMESIQGLSTWCIENKKFHSVIVKYWIKWLRKSDASHRLNLFYLAND 79
Query: 66 VIQNSKKKGP-EYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIA 124
VIQN K+K Y F +L +A + K + S+ RIL+IWEER VY ++ I+
Sbjct: 80 VIQNCKRKNAIVYRTTFTDLLPEAMHLIRATK-DAKVKKSVERILSIWEERNVYSEEFIS 138
Query: 125 SFRTAFNAALEP 136
R + EP
Sbjct: 139 QLRNSLARKEEP 150
Score = 38 (18.4 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 20/100 (20%), Positives = 45/100 (45%)
Query: 215 QQIASFRTAFNAALEPQTKRRKLSESNTEVLYDVDELETSASSDANIREKIAKLPPEVSE 274
Q IAS + + + E + +R + E+ L ++ + S +A E+ + L ++ +
Sbjct: 746 QTIASIKDSVPSLAEAEAQRHQRMEAMRSSLMSSNQQSSRESLEAT--ERSSMLLQDMRQ 803
Query: 275 IQLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLLTNYNT 314
L+ N+ P ++A + + Q + +L N +T
Sbjct: 804 NPLIH-----NVAPNP-KLAEGSYAYQDGQERHVLPNSDT 837
>MGI|MGI:1922387 [details] [associations]
symbol:Rprd2 "regulation of nuclear pre-mRNA domain
containing 2" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] MGI:MGI:1922387 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 eggNOG:NOG331230 CTD:23248
HOVERGEN:HBG104176 OMA:GKGNRGH ChiTaRS:RPRD2 EMBL:BC067054
EMBL:AK129150 EMBL:AK154692 IPI:IPI00454123 IPI:IPI00762512
RefSeq:NP_001074762.1 UniGene:Mm.196275 ProteinModelPortal:Q6NXI6
SMR:Q6NXI6 PhosphoSite:Q6NXI6 PaxDb:Q6NXI6 PRIDE:Q6NXI6
Ensembl:ENSMUST00000090791 GeneID:75137 KEGG:mmu:75137
UCSC:uc008qkx.1 UCSC:uc008qky.1 HOGENOM:HOG000154192
InParanoid:Q6NXI6 OrthoDB:EOG4XSKQN NextBio:342303 Bgee:Q6NXI6
Genevestigator:Q6NXI6 GermOnline:ENSMUSG00000028106 Uniprot:Q6NXI6
Length = 1469
Score = 230 (86.0 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 56/144 (38%), Positives = 80/144 (55%)
Query: 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMY 61
AG +S+L K + + + +SIQ LS W I ++KHHSTIV W+ + ++ +L L Y
Sbjct: 20 AGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFY 79
Query: 62 LANDVIQNSKKKGPEYGKE-FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
LANDVIQN K+K +E F VL +A V D S+ S+ RI IWE+R VY +
Sbjct: 80 LANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSK----SIERIFKIWEDRNVYPE 135
Query: 121 QQIASFRTAF-NAALEPQTKRRKL 143
I + R A + A + +KL
Sbjct: 136 DMIVALREALMDRAASHNARLQKL 159
>UNIPROTKB|G3MX56 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
OMA:GKGNRGH EMBL:DAAA02007262 Ensembl:ENSBTAT00000063685
Uniprot:G3MX56
Length = 1485
Score = 229 (85.7 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 53/135 (39%), Positives = 77/135 (57%)
Query: 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMY 61
AG +S+L K + + + +SIQ LS W I ++KHH+TIV W+ + ++ +L L Y
Sbjct: 20 AGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFY 79
Query: 62 LANDVIQNSKKKGPEYGKE-FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
LANDVIQN K+K +E F VL +A V D S+ S+ RI IWE+R VY +
Sbjct: 80 LANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSK----SIERIFKIWEDRNVYPE 135
Query: 121 QQIASFRTAFNAALE 135
+ I + R A L+
Sbjct: 136 EMIMALREALTLTLK 150
>UNIPROTKB|I3LG94 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
OMA:GKGNRGH EMBL:FP312851 Ensembl:ENSSSCT00000022559 Uniprot:I3LG94
Length = 1477
Score = 225 (84.3 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 52/129 (40%), Positives = 75/129 (58%)
Query: 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMY 61
AG +S+L K + + + +SIQ LS W I ++KHH+TIV W+ + ++ +L L Y
Sbjct: 20 AGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFY 79
Query: 62 LANDVIQNSKKKGPEYGKE-FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
LANDVIQN K+K +E F VL +A V D S+ S+ RI IWE+R VY +
Sbjct: 80 LANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSK----SIERIFKIWEDRNVYPE 135
Query: 121 QQIASFRTA 129
+ I + R A
Sbjct: 136 EMIMALREA 144
>TAIR|locus:2091990 [details] [associations]
symbol:AT3G26990 "AT3G26990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 EMBL:BT015401
IPI:IPI00544659 RefSeq:NP_189335.2 UniGene:At.43702
ProteinModelPortal:Q66GK1 SMR:Q66GK1 IntAct:Q66GK1 PaxDb:Q66GK1
PRIDE:Q66GK1 EnsemblPlants:AT3G26990.1 GeneID:822316
KEGG:ath:AT3G26990 TAIR:At3g26990 HOGENOM:HOG000029886
InParanoid:Q66GK1 OMA:RDMIENG PhylomeDB:Q66GK1
ProtClustDB:CLSN2680177 Genevestigator:Q66GK1 Uniprot:Q66GK1
Length = 513
Score = 218 (81.8 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 47/117 (40%), Positives = 69/117 (58%)
Query: 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMY 61
+ F L+ KL +LN SQ SI+TLS W I H +V+TW + A ++L +Y
Sbjct: 3 SSFNAQILVEKLAKLNNSQASIETLSHWCIFHMNKAKHVVETWGRQFHCAPREQRLAYLY 62
Query: 62 LANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVY 118
LAND++QNS++KG E+ EF VL A + + + + R S R++NIWEER V+
Sbjct: 63 LANDILQNSRRKGSEFVGEFWKVLPDALRDMIE-NGDDFGRKSARRLVNIWEERKVF 118
>CGD|CAL0000943 [details] [associations]
symbol:orf19.7662 species:5476 "Candida albicans" [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] [GO:0010526 "negative regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0031124 "mRNA 3'-end
processing" evidence=IEA] CGD:CAL0000943 EMBL:AACQ01000032
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 RefSeq:XP_719421.1
ProteinModelPortal:Q5ACI0 GeneID:3638998 KEGG:cal:CaO19.7662
HOGENOM:HOG000246863 Uniprot:Q5ACI0
Length = 335
Score = 205 (77.2 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 42/137 (30%), Positives = 83/137 (60%)
Query: 4 FTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEV--EKADDHRKLTLMY 61
F+ +A KL+ L+ +Q+SI ++S W++ H+K++ K W++ + + ++L+L+Y
Sbjct: 3 FSATAFKFKLDTLSDTQESIVSISQWVLFHQKYYKESAKIWLNYITQDSITPAKRLSLLY 62
Query: 62 LANDVIQNSKKKG-PEYGKEFGHVLKQAFV-SVGDVHCSEKTRSSLSRILNIWEERGVYD 119
L NDV+Q +++K PE+ EF VL A + G+++ + R+LN+WEER ++
Sbjct: 63 LCNDVVQQARRKNKPEFINEFNKVLPDALSKNYGNLN------PKVDRLLNVWEERKIFT 116
Query: 120 KQQIASFRTAFNAALEP 136
+ +IA+ + + A +P
Sbjct: 117 EDEIANMKASLEAEPKP 133
Score = 39 (18.8 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 229 EPQTKRRKLSES-------NTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKV 281
E +TK+R+LS++ + V + D +E D N E ++ V + LLSK+
Sbjct: 280 EEETKKRRLSQTPSGGSTPSKRVAFSED-VEVFEDPDENKEESVS-----VDVMSLLSKL 333
>UNIPROTKB|H9L0N7 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 OMA:GKGNRGH
EMBL:AADN02044034 EMBL:AADN02015890 EMBL:AADN02015891
EMBL:AADN02015892 EMBL:AADN02015893 EMBL:AADN02015894
EMBL:AADN02044035 EMBL:AADN02044036 EMBL:AADN02044037
EMBL:AADN02044038 EMBL:AADN02044039 EMBL:AADN02044040
EMBL:AADN02044041 EMBL:AADN02044042 EMBL:AADN02058745
EMBL:AADN02058746 EMBL:AADN02058747 EMBL:AADN02058748
Ensembl:ENSGALT00000023620 Uniprot:H9L0N7
Length = 1455
Score = 217 (81.4 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 49/142 (34%), Positives = 82/142 (57%)
Query: 2 AGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMY 61
AG +++L KL+ + + +SIQ LS W + +++HH+TIV W+ + ++ +L L Y
Sbjct: 21 AGALEASLHWKLQAVTNTMESIQGLSSWCLENKRHHNTIVYHWMKWLRRSAFPHRLNLFY 80
Query: 62 LANDVIQNSKKKGPEYGKE-FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
LANDVIQN K+K ++ F VL +A V D S+ S+ RI IWE+R VY +
Sbjct: 81 LANDVIQNCKRKNAIVFRDTFAEVLPEAASLVKDPSVSK----SIERIFKIWEDRNVYPE 136
Query: 121 QQIASFRTAFNAALEPQTKRRK 142
+ I + + A + + Q + ++
Sbjct: 137 ETILALKEALSTTFKTQKQLKE 158
>POMBASE|SPBC337.03 [details] [associations]
symbol:rhn1 "RNA polymerase II transcription termination
factor homolog" species:4896 "Schizosaccharomyces pombe"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030846
"termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=ISO] [GO:0071276 "cellular response to cadmium ion"
evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] PomBase:SPBC337.03 GO:GO:0005829 GO:GO:0005634
EMBL:CU329671 GO:GO:0071276 GO:GO:0071585 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 KO:K15559 GO:GO:0030846 OMA:ASESCKG
OrthoDB:EOG4X0R2T PIR:T40256 RefSeq:NP_595404.1
ProteinModelPortal:O74814 EnsemblFungi:SPBC337.03.1 GeneID:2540220
KEGG:spo:SPBC337.03 NextBio:20801352 Uniprot:O74814
Length = 387
Score = 188 (71.2 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 40/131 (30%), Positives = 76/131 (58%)
Query: 5 TQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLAN 64
T + SKL LN +Q+SI ++ W++ H+++ IV+ W++ + ++ ++KL L+YL N
Sbjct: 4 TPDTVSSKLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLN 63
Query: 65 DVIQNSK-KKGPEYGKEFG-HVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQ 122
+V+Q S+ KK EY +V+ + V S KT+ + + ++W +RG++ K+
Sbjct: 64 EVVQQSRVKKISEYIDAVSPYVVNSVADAYASVPASIKTK--IKYVFDVWCQRGIFSKEI 121
Query: 123 IASFRTAFNAA 133
+ S + FN A
Sbjct: 122 LLSLQERFNNA 132
>ASPGD|ASPL0000042222 [details] [associations]
symbol:AN2049 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0071585
"detoxification of cadmium ion" evidence=IEA] [GO:0071276 "cellular
response to cadmium ion" evidence=IEA] EMBL:BN001307
EMBL:AACD01000032 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577 KO:K15559
OrthoDB:EOG4X0R2T RefSeq:XP_659653.1 ProteinModelPortal:Q5BBN1
EnsemblFungi:CADANIAT00008718 GeneID:2875473 KEGG:ani:AN2049.2
HOGENOM:HOG000190337 OMA:IVTVAQW Uniprot:Q5BBN1
Length = 414
Score = 170 (64.9 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 31/117 (26%), Positives = 67/117 (57%)
Query: 4 FTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLA 63
+T ++ +KL LN +Q+ I T++ W++ HR+H + W+ ++ + ++L L+YLA
Sbjct: 3 YTDDSVKAKLSALNETQEGIVTVAQWVMFHRRHAERTAQLWLQKLRDSPAAKRLNLIYLA 62
Query: 64 NDVIQNSKKKGPE-YGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYD 119
N+V Q S+ + E + F ++ +A V++ S + L R++ +W +R +++
Sbjct: 63 NEVAQQSRARRKEDFLIAFSPIIAEA-VAIAYKGASNDIQQKLRRVVEVWRQRNIFE 118
>SGD|S000002697 [details] [associations]
symbol:RTT103 "Protein involved in transcription termination
by RNA polymerase II" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA] [GO:0010526 "negative
regulation of transposition, RNA-mediated" evidence=IMP]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0031124 "mRNA
3'-end processing" evidence=IGI;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0035861 "site of double-strand
break" evidence=IDA] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA;IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] SGD:S000002697 GO:GO:0006355 GO:GO:0003677
EMBL:BK006938 GO:GO:0006351 GO:GO:0000790 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0000993 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559
GO:GO:0031124 GO:GO:0010526 GO:GO:0035861 EMBL:U51031 PDB:2L0I
PDBsum:2L0I EMBL:AY557793 PIR:S70119 RefSeq:NP_010575.1 PDB:2KM4
PDBsum:2KM4 ProteinModelPortal:Q05543 SMR:Q05543 DIP:DIP-2583N
IntAct:Q05543 MINT:MINT-425860 STRING:Q05543 PaxDb:Q05543
EnsemblFungi:YDR289C GeneID:851884 KEGG:sce:YDR289C CYGD:YDR289c
HOGENOM:HOG000141975 OMA:ASESCKG OrthoDB:EOG4X0R2T
EvolutionaryTrace:Q05543 NextBio:969856 Genevestigator:Q05543
GermOnline:YDR289C Uniprot:Q05543
Length = 409
Score = 139 (54.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 35/136 (25%), Positives = 63/136 (46%)
Query: 4 FTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEK--ADDHRKLTLMY 61
F+ +KL L SQ+SI + S WL+ + + + W + + + + RKL +Y
Sbjct: 3 FSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLY 62
Query: 62 LANDVIQNSK-KKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
L N V+Q +K +K ++ FG V + + + LSR++NI +ER ++ K
Sbjct: 63 LMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQ-EFPRDLKKKLSRVVNILKERNIFSK 121
Query: 121 QQIASFRTAFNAALEP 136
Q + + P
Sbjct: 122 QVVNDIERSLKTESSP 137
>WB|WBGene00009451 [details] [associations]
symbol:cids-2 species:6239 "Caenorhabditis elegans"
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
GO:GO:0040027 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GO:GO:0031124 EMBL:Z81077
UniGene:Cel.7194 GeneID:172691 KEGG:cel:CELE_F36A2.1 UCSC:F36A2.1a
CTD:172691 HOGENOM:HOG000290228 NextBio:876603
RefSeq:NP_001122472.1 ProteinModelPortal:A5Z2V1 SMR:A5Z2V1
STRING:A5Z2V1 EnsemblMetazoa:F36A2.1d WormBase:F36A2.1d
InParanoid:A5Z2V1 OMA:EAIETMS ArrayExpress:A5Z2V1 Uniprot:A5Z2V1
Length = 664
Score = 135 (52.6 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 33/125 (26%), Positives = 70/125 (56%)
Query: 1 MAGFTQSALISKLEEL---NASQQSIQTLSLWLIHHRKHHST--IVKTWIDEVEKAD-DH 54
M T + S+L++ N +Q++I+T+S+W++H++ + S IV W++ + A D+
Sbjct: 1 MVVLTSDVVYSRLQDFQVKNPTQEAIETMSMWIMHYKDNASIDLIVDGWLNCFKTAGTDN 60
Query: 55 RKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVS-VGDVHCSEKTRSSLSRILNIWE 113
+++ L Y+ NDV+Q +K K + + A ++ VG +K ++ + R + I++
Sbjct: 61 KRIALFYVMNDVVQKAKMK---HADTLIPAFQPAVLTAVGIGRKQDKVKAVMKRCIQIFK 117
Query: 114 ERGVY 118
R V+
Sbjct: 118 SRNVF 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.362 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 366 351 0.00078 117 3 11 23 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 599 (64 KB)
Total size of DFA: 211 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.59u 0.08s 32.67t Elapsed: 00:00:05
Total cpu time: 32.59u 0.08s 32.67t Elapsed: 00:00:06
Start: Thu Aug 15 13:28:31 2013 End: Thu Aug 15 13:28:37 2013