RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15160
(366 letters)
>gnl|CDD|214731 smart00582, RPR, domain present in proteins, which are involved in
regulation of nuclear pre-mRNA.
Length = 124
Score = 123 bits (310), Expect = 1e-34
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 8 ALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVI 67
A KLE LN SQ+SIQTL+ W I H H IV+ W ++KA RKL L+YL + ++
Sbjct: 1 AFEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPVPRKLPLLYLLDSIV 60
Query: 68 QNSK-KKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASF 126
QNSK K G E+G E G V + A V E+ + + R+LNIWEERG++ + +
Sbjct: 61 QNSKRKYGSEFGDELGPVFQDALRRVLG-AAPEELKKKIRRLLNIWEERGIFPPEVLRPL 119
Query: 127 RTAFN 131
R N
Sbjct: 120 REKLN 124
Score = 38.0 bits (89), Expect = 0.001
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 190 HCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN 225
E+ + + R+LNIWEERG++ + + R N
Sbjct: 89 AAPEELKKKIRRLLNIWEERGIFPPEVLRPLREKLN 124
>gnl|CDD|239621 cd03562, CID, CID (CTD-Interacting Domain) domain family; CID is
present in several RNA-processing factors such as Pcf11
and Nrd1. Pcf11 is a conserved and essential subunit of
the yeast cleavage factor IA, which is required for
polyadenylation-dependent 3'-RNA processing and
transcription termination. Nrd1 is implicated in
polyadenylation-independent 3'-RNA processing. CID binds
tightly to the carboxy-terminal domain (CTD) of RNA
polymerase (Pol) II. During transcription, Pol II
synthesizes eukaryotic messenger RNA. Transcription is
coupled to RNA processing through the CTD, which
consists of up to 52 repeats of the sequence Tyr 1-Ser
2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight
alpha-helices in a right-handed superhelical
arrangement, which closely resembles that of the VHS
domains and ARM (Armadillo) repeat proteins, except for
its two amino-terminal helices.
Length = 114
Score = 118 bits (299), Expect = 5e-33
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 4 FTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLA 63
F +AL+ KL SQ SIQTL+ I +RKH IV+ ++K +KL L+YL
Sbjct: 2 FDYNALLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLL 61
Query: 64 NDVIQNSKKKGPEYGKE-----FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVY 118
+ +++N +K E+ E F ++ EKTR L R+LNIWEER V+
Sbjct: 62 DSIVKNVGRKYKEFFSEFLVPLFLDAYEK---------VDEKTRKKLERLLNIWEERFVF 112
Query: 119 DK 120
Sbjct: 113 GS 114
Score = 38.0 bits (89), Expect = 0.001
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 172 GRRNKYDKKQAFVSV-GDV--HCSEKTRSSLSRILNIWEERGVYDK 214
GR+ K + V + D EKTR L R+LNIWEER V+
Sbjct: 69 GRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWEERFVFGS 114
>gnl|CDD|218279 pfam04818, CTD_bind, RNA polymerase II-binding domain. This domain
binds to the phosphorylated C-terminal domain (CTD) of
RNA polymerase II.
Length = 64
Score = 73.0 bits (180), Expect = 1e-16
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 56 KLTLMYLANDVIQNSKKKGP-EYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEE 114
KL L+YLANDV+QNSK K E+ K F VL AF V E+ + + R+LNIWEE
Sbjct: 1 KLPLLYLANDVVQNSKHKNKDEFVKAFSPVLPDAFAHVY-KEGDEEVKKKIRRLLNIWEE 59
Query: 115 RGVYD 119
R V+
Sbjct: 60 RNVFS 64
Score = 33.7 bits (78), Expect = 0.014
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 192 SEKTRSSLSRILNIWEERGVYD 213
E+ + + R+LNIWEER V+
Sbjct: 43 DEEVKKKIRRLLNIWEERNVFS 64
>gnl|CDD|192965 pfam12243, CTK3, CTD kinase subunit gamma CTK3. The C-terminal
domain kinase (CTDK-1), is a three-subunit complex
comprised of Ctk1, Ctk2, and Ctk3, that plays a key role
in regulation of transcription and translation and in
coordinating these two processes. Both Ctk2 and Ctk3 are
regulated at the level of protein turnover, and are
unstable proteins processed through a
ubiquitin-proteasome pathway. Their physical interaction
is required to protect both subunits from degradation,
and both Ctk2 and Ctk3 are required for Ctk1 CTD kinase
activation. The mammalian P-TEFb is mirrored by the
combined complexes in yeast of the CTDK1 and the Bur1/2.
Length = 139
Score = 42.0 bits (99), Expect = 7e-05
Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 5 TQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLAN 64
+S L LNAS QS+Q + + + + + ++++E + + +MY +
Sbjct: 6 VRSRFTQLLRHLNASVQSLQKAASFALKYSDMEEDLHSCILEQLEDGSLNTRANIMYFID 65
Query: 65 DVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLS-----RILNIWEERGVYD 119
+ + + K+G + +L++ + D E+ + + ++L +R V D
Sbjct: 66 TLCEMALKEGK-SHNPYVRMLQRDIPRLVDSVVPEENSGAANLKSVRKVLQTLRKRLVLD 124
Query: 120 KQQIA 124
+
Sbjct: 125 PETYE 129
>gnl|CDD|200985 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases,
alpha-hairpin domain. superoxide dismutases (SODs)
catalyze the conversion of superoxide radicals to
hydrogen peroxide and molecular oxygen. Three
evolutionarily distinct families of SODs are known, of
which the Mn/Fe-binding family is one. In humans, there
is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe
SOD. N-terminal domain is a long alpha antiparallel
hairpin. A small fragment of YTRE_LEPBI matches well -
sequencing error?.
Length = 82
Score = 30.7 bits (70), Expect = 0.23
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRK 56
IHH KHH T V +E ++ RK
Sbjct: 25 IHHGKHHQTYVNNLNAALEGLEEARK 50
>gnl|CDD|206529 pfam14361, RsbRD_N, RsbT co-antagonist protein rsbRD N-terminal
domain. This domain is found at the N-terminus of a
number of anti-sigma-factor antagonist proteins
including B. subtilis RsbRD. These proteins are negative
regulators of the general stress transcription factor
sigma(B). It is found in association with pfam01740.
Length = 105
Score = 31.1 bits (71), Expect = 0.23
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 34 RKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVG 93
R++ I++ WI+ V R S+ + E+ L +A S
Sbjct: 7 RENRDAILERWIEAVLATYPERTDRF----------SEAELREFANPVLDALVEALGSGL 56
Query: 94 DVHCS--EKTRSSLSRILNIWEERGVYDKQQIASF 126
D+ E+ R L + I +G + + ASF
Sbjct: 57 DLLAGEWEELRELLEELSRIRAVQG-FTPSETASF 90
>gnl|CDD|226445 COG3935, DnaD, Putative primosome component and related proteins
[DNA replication, recombination, and repair].
Length = 246
Score = 32.4 bits (74), Expect = 0.27
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 201 RILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLSESNTEVLYDVDELET 253
IL W++ GV + + + L+ + + + S+ N LYD + E
Sbjct: 184 AILRNWKKNGVKTVEDVRAREEERRTRLKQKQNKPQNSKDNKNPLYDWLDSEK 236
Score = 30.5 bits (69), Expect = 1.3
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 107 RILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLSESNTEVLYD 153
IL W++ GV + + + L+ + + + S+ N LYD
Sbjct: 184 AILRNWKKNGVKTVEDVRAREEERRTRLKQKQNKPQNSKDNKNPLYD 230
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 32.0 bits (73), Expect = 0.54
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 9/155 (5%)
Query: 214 KQQIASFRTAFNA-ALEPQTKRRKLSESNTEVLYDVDELETSASSDANIREKIAKLPPEV 272
++ + R E R +L + LE + E I L E+
Sbjct: 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
Query: 273 SEIQLLSKVQGKNITGQPDRVAAENLSIQVNEAVDLL-TNYNTRLVTEMEDRKRASAMLK 331
E++ L + + + A N + EA+ LL + E + S L+
Sbjct: 862 EELEELIEEL------ESELEALLNERASLEEALALLRSELEELSEELRELESKRSE-LR 914
Query: 332 DYIAAQRELLEQAEQRLEVSETEIFLFLKKFDGEY 366
+ RE L Q E RLE E I ++ EY
Sbjct: 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949
>gnl|CDD|153365 cd07681, F-BAR_PACSIN3, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 3 or Syndapin III is expressed ubiquitously and
regulates glucose uptake in adipocytes through its role
in GLUT1 trafficking. It also modulates the subcellular
localization and stimulus-specific function of the
cation channel TRPV4. PACSIN 3 contains an N-terminal
F-BAR domain and a C-terminal SH3 domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 258
Score = 31.4 bits (71), Expect = 0.67
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 208 ERGVYDKQQIASFRTA------FNAALEPQTKRRKLSESNTEVLYDVDELETSASSDANI 261
++ + KQ I FR + F A +P K+ K ES+ + + + E +A +
Sbjct: 99 QKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKKGYHAARKDERTAQT---- 154
Query: 262 REKIAKLPPEVSEIQLLSKVQGKNITGQPDRVA-----AENLSIQVNEAVDLLTNYNTRL 316
RE AK VS+ QL K+Q DRV AE Q +A++ L YN R
Sbjct: 155 RETHAKADSTVSQEQL-RKLQ--------DRVEKCTQEAEKAKEQYEKALEELNRYNPRY 205
Query: 317 VTEMEDR-KRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKK 361
+ +ME + + + +E+L Q L++S ++ F L +
Sbjct: 206 MEDMEQAFEICQEAERKRLCFFKEMLLDLHQHLDLSSSDSFHALYR 251
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 30.0 bits (68), Expect = 2.3
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 260 NIREKIAKLPPEVSEIQ-LLSKVQGKNITGQPDRVAAENLSIQVNEAVD-LLTNYNTRLV 317
+ +I KL + ++ L ++Q + VA E + E +L
Sbjct: 243 KVAPEIEKLQEDFEQLLSLELRLQHL----HGELVADEERLAEEQEERQEAKNRLRQQLR 298
Query: 318 TEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETEIFLFLKK 361
T + K A L ++A L LE+ E + F
Sbjct: 299 TLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDA 342
>gnl|CDD|218062 pfam04395, Poxvirus_B22R, Poxvirus B22R protein. This is highly
conserved C-rich, central region of poxvirus proteins
from eg, Fowlpox virus, Myxoma virus, Lumpy skin
disease, Variola virus and other members of the
Poxviridae family of double-stranded, no-RNA stage
poxviruses. There are three pairs of conserved cysteine
residues.
Length = 204
Score = 29.3 bits (66), Expect = 2.4
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 229 EPQTKRRKLSESNTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQL 277
+ K K S V D+L ++ + R I P + IQ+
Sbjct: 117 NEKKKSPKRRTSKPPVPSKDDDLVLMSAKELGARPVI---PRRATHIQV 162
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 29.4 bits (66), Expect = 3.4
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 304 EAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQA 344
LL + L TE EDR+ L+ I REL +
Sbjct: 1170 ALRRLL-RTDPDLWTE-EDREAVGEFLQQRIERARELDDAG 1208
>gnl|CDD|203372 pfam06009, Laminin_II, Laminin Domain II. It has been suggested
that the domains I and II from laminin A, B1 and B2 may
come together to form a triple helical coiled-coil
structure.
Length = 138
Score = 28.2 bits (63), Expect = 4.1
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 235 RKLSESNTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVA 294
R+ +E+ VL ++ + T+ S N + K++KL + E V N +
Sbjct: 6 REANETAANVLKQLEPISTNLS---NTKAKLSKLNGSLEETN--ELVNSANKAVDDAGRS 60
Query: 295 AENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQ 346
L + +D L V A+ L I+ +EL+ QA +
Sbjct: 61 VRKLEKLAPDLLDKLKPLKQLEV--------ANQSLSRNISRIKELIAQARK 104
>gnl|CDD|189736 pfam00838, TCTP, Translationally controlled tumour protein.
Length = 165
Score = 28.1 bits (63), Expect = 4.5
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 294 AAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSET 353
E + V VD++ N RL D+K +K Y+ A + L Q E VS
Sbjct: 54 GEEGVDETVERVVDIV--LNFRLQETSFDKKSFKTYIKGYMKAVKAKL-QEENPERVSLF 110
Query: 354 E 354
+
Sbjct: 111 K 111
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 28.7 bits (64), Expect = 5.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 301 QVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAE 345
+VNE L N L E+E+R+ A A LK Q EL++ A+
Sbjct: 406 RVNEKTQSLRERNQELQAEVEERQEAEAHLK---KTQGELIQAAK 447
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 28.5 bits (64), Expect = 7.6
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 30/150 (20%)
Query: 214 KQQIASFRTAFNAALEPQTKRRKLSESNTEVLYDV-DELETSASSDANIREKIAKLPPEV 272
+Q++A + AL QT+R S+ L ++ +L S+ IRE+IA L +
Sbjct: 61 QQELAIND-QLSQALNQQTERLNALASDDRQLANLLLQLLQSS---RTIREQIAVLRGSL 116
Query: 273 SEIQLLSKVQGK-----------NITGQPDRVAAENLSI-QVNEAVDLLTNYNTRLVTEM 320
++L + G +T + D + AE I + + LT
Sbjct: 117 LLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALEGQAEQLTA--------- 167
Query: 321 EDRKRASAMLKDYIAAQRELLEQAEQRLEV 350
+L + +RELL + E
Sbjct: 168 ----EVRDILDQILDTRRELLNSLLSQREA 193
>gnl|CDD|213756 TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor,
Bacteroides expansion family 1. This group of sigma
factors are members of the sigma-70 family (TIGR02937)
and are found primarily in the genus Bacteroides. This
family appears to have resulted from a lineage-specific
expansion as B. thetaiotaomicron VPI-5482, Bacteroides
forsythus ATCC 43037, Bacteroides fragilis YCH46 and
Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23
members, respectively. There are currentlyonly two known
members of this family outside of the Bacteroides, in
Rhodopseudomonas and Bradyrhizobium.
Length = 161
Score = 27.1 bits (61), Expect = 8.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 237 LSESNTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGK 284
LSE++ E + ELE I E I KLP + EI +LS+ +G
Sbjct: 89 LSEADPEEELEAKELEEI------IEEAIEKLPEQCREIFILSRFEGL 130
>gnl|CDD|235663 PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1244
Score = 27.9 bits (63), Expect = 9.5
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 302 VNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQ---RLEVSETEIFLF 358
+ V+ L LV +E + L A + RL + EI
Sbjct: 769 AGDTVERLEVLAAELVEALEPA--------GWDPTAAVLEFAATELVPRLAATPDEIEQL 820
Query: 359 LKKFDGEY 366
L+ DG +
Sbjct: 821 LRGLDGRF 828
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 28.0 bits (62), Expect = 9.5
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 8/152 (5%)
Query: 212 YDKQQIASFRTAFNAALEPQTKRRKLSESNTE---VLYDVDELETSASSDANIREKIAKL 268
++ + + +++ L + +E + Y + L + + I +
Sbjct: 657 QERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEY 716
Query: 269 PPEVSEIQLLSKVQGKNITGQPDRVA-----AENLSIQVNEAVDLLTNYNTRLVTEMEDR 323
E +EI+ S G ++ + D + + + V +A N VT
Sbjct: 717 DREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQT 776
Query: 324 KRASAMLKDYIAAQRELLEQAEQRLEVSETEI 355
+ L I L E+ L+ E EI
Sbjct: 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEI 808
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 28.0 bits (63), Expect = 9.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 304 EAVDLLTNYNTRLVTEM----EDR-------KRASAMLKDYIAAQRELLEQAEQ 346
E D +N ++V EM D K+ SAML + I RE L ++
Sbjct: 543 ERADRFRRHNLQMVEEMAPHENDTKKRAAVAKQTSAMLSEIITEDREHLSLIQR 596
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,058,537
Number of extensions: 1707636
Number of successful extensions: 2010
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 51
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (26.8 bits)