RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15160
(366 letters)
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 144
Score = 92.4 bits (229), Expect = 2e-23
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 13/142 (9%)
Query: 1 MAGFTQSAL---ISKLEELN-ASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRK 56
M T+ + S LEEL S+ I TL+ + V +EK +K
Sbjct: 1 MDHDTEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQK 60
Query: 57 LTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERG 116
L Y + + +N Y F L + + TR+ L + +W
Sbjct: 61 LYAFYALDSICKNVG---SPYTIYFSRNLFNLYKRT-YLLVDNTTRTKLINMFKLWLNPN 116
Query: 117 -----VYDKQQIASFRTAFNAA 133
+++ + A
Sbjct: 117 DTGLPLFEGSALEKIEQFLIKA 138
Score = 30.4 bits (68), Expect = 0.16
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 5/43 (11%)
Query: 190 HCSEKTRSSLSRILNIWEERG-----VYDKQQIASFRTAFNAA 227
TR+ L + +W +++ + A
Sbjct: 96 LVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKA 138
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD)
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 92
Score = 29.6 bits (66), Expect = 0.17
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRK----LTLMYLANDVIQN 69
+HH+KHH V +EK + RK + + + D+ +
Sbjct: 30 LHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFH 72
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD)
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 89
Score = 28.5 bits (63), Expect = 0.38
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKK 72
+H+ HH V +E+ + K L D+ +
Sbjct: 29 VHYNGHHKGYVNGANSLLERLEKVVKGDLQTGQYDIQGIIRG 70
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 88
Score = 28.4 bits (63), Expect = 0.41
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQN 69
IHH+KHH V + K D+ R+ ++
Sbjct: 28 IHHQKHHQAYVDGANALLRKLDEARESDTDVDIKAALKE 66
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD)
{Thermus thermophilus [TaxId: 274]}
Length = 92
Score = 26.9 bits (59), Expect = 1.5
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKK 72
IHH+KHH V +EK + + L + +
Sbjct: 27 IHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQD 68
>d1jr9a1 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD)
{Bacillus halodenitrificans [TaxId: 1482]}
Length = 90
Score = 26.5 bits (58), Expect = 1.7
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLM-YLANDVIQNSKKKGPEYGKEFGHVLKQAF 89
IHH KHH+T V +E +D + +L ++N + GH F
Sbjct: 25 IHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISNLDAVPENIRTAVRNNGGGHANHSLF 84
>d1unfx1 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD)
{Cowpea (Vigna unguiculata) [TaxId: 3917]}
Length = 91
Score = 26.6 bits (58), Expect = 1.7
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK 73
H KHH T V+ +V + K + +
Sbjct: 29 FHWGKHHRTYVENLKKQVVGTELDGKSLEEIIVTAYNKGDILP 71
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase
{Propionibacterium shermanii [TaxId: 1752]}
Length = 86
Score = 26.5 bits (58), Expect = 1.8
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQN 69
+HH KHH V ++K + R N + ++
Sbjct: 26 LHHDKHHKAYVDGANTALDKLAEARDKADFGAINKLEKD 64
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD)
{Aquifex pyrophilus [TaxId: 2714]}
Length = 89
Score = 26.5 bits (58), Expect = 1.9
Identities = 11/59 (18%), Positives = 19/59 (32%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAF 89
H H+ V + + EK D + + + K E G VL + +
Sbjct: 25 PHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQNYSEYRELKVEETFNYMGVVLHELY 83
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 28.2 bits (62), Expect = 1.9
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 9/42 (21%)
Query: 259 ANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAENLSI 300
I LP + E ++L +++ R+AA+NL
Sbjct: 32 KEILSPPIDLPEPLPEWKVLEELR---------RLAAQNLPA 64
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 84
Score = 26.1 bits (57), Expect = 2.1
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKKG 74
+HH+KHH T V +E + T + V Q K G
Sbjct: 26 LHHKKHHQTYVNGLNAALEAQKKAAEATDVPKLVSVQQAIKFNG 69
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 84
Score = 26.2 bits (57), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRK 56
+HH KHH+T VK D V K ++ R
Sbjct: 26 LHHSKHHATYVKGANDAVAKLEEARA 51
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD)
{Anabaena sp. [TaxId: 1167]}
Length = 102
Score = 26.2 bits (57), Expect = 2.5
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKK 72
+HH KHH+ V + ++K + + ++ L D+ +
Sbjct: 37 LHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPED 78
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD)
{Escherichia coli [TaxId: 562]}
Length = 90
Score = 26.1 bits (57), Expect = 2.5
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK 73
IHH KHH T V +E + L + L + Q K
Sbjct: 25 IHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADK 67
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD)
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 88
Score = 25.8 bits (56), Expect = 3.5
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSKKK 73
H+ KHH V + + K + +K
Sbjct: 26 FHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYGDAAKVG 68
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30
(L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
Length = 100
Score = 25.1 bits (55), Expect = 5.8
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 45 IDEVEKADDHRKLTLMYLANDVIQNSKKKGPEYGKEFG 82
+ ++ L+ +A + + K+ Y + G
Sbjct: 20 YRKTVQSLKMGGSKLIIIARNTRPDRKEDLEYYARLSG 57
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC,
N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 59
Score = 23.8 bits (52), Expect = 8.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 258 DANIREKIAKLPPEVSEIQ 276
DA I+ K+ I+
Sbjct: 1 DAAIKRKLQSFNISNIVIK 19
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A
homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 24.9 bits (54), Expect = 9.7
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 101 TRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRR 141
L++ L ++ + K++ + K
Sbjct: 61 KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKAN 101
Score = 24.9 bits (54), Expect = 9.7
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 195 TRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRR 235
L++ L ++ + K++ + K
Sbjct: 61 KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKAN 101
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 168
Score = 25.1 bits (55), Expect = 9.9
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 281 VQGKNITGQPD-----------RVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAM 329
+ +T + A EN +L+ ++ RL D+K +
Sbjct: 30 ADCQMVTVKQGGDVDIGANPSAEDAEENAEEGTETVNNLVYSF--RLSPTSFDKKSYMSY 87
Query: 330 LKDYIAAQRELL-EQAEQRLEVSETEIFLFLKK 361
+K Y+ A + L E +R+ V E F+KK
Sbjct: 88 IKGYMKAIKARLQESNPERVPVFEKNAIGFVKK 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,264,607
Number of extensions: 55903
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 36
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.6 bits)