BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15162
         (70 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O57472|CHRD_DANRE Chordin OS=Danio rerio GN=chd PE=2 SV=1
          Length = 940

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 23/34 (67%)

Query: 31 SKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
          S C FG  FY +   WHPDLGEPFGV HCV C C
Sbjct: 42 SGCSFGGRFYSLEDTWHPDLGEPFGVMHCVMCHC 75



 Score = 32.7 bits (73), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 33  CVFGKEFYEIGAKWHPDLGEPF-GVYHCVTCEC 64
           C FGK +Y+    WHP +  P  G   C+TC C
Sbjct: 857 CKFGKNYYQNSEHWHPSV--PLVGEMKCITCWC 887


>sp|Q24025|SOG_DROME Dorsal-ventral patterning protein Sog OS=Drosophila melanogaster
           GN=sog PE=1 SV=1
          Length = 1038

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 31  SKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQVSR 69
           ++C FGK   E+G+ W+ DLG PFGV +C+ CECV + +
Sbjct: 100 TECQFGKVLRELGSTWYADLGPPFGVMYCIKCECVAIPK 138



 Score = 36.6 bits (83), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 33  CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
           C  G++F+  GA WHP L  P G   C TC C
Sbjct: 832 CRLGEQFHPAGASWHPFL-PPNGFDTCTTCSC 862


>sp|Q91713|CHRD_XENLA Chordin OS=Xenopus laevis GN=chrd PE=1 SV=1
          Length = 941

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC-VQVSR 69
          C FG +FY +   WHPDLGEPFGV HCV C C  Q SR
Sbjct: 43 CTFGGKFYSLEDSWHPDLGEPFGVMHCVLCYCEPQRSR 80



 Score = 37.0 bits (84), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 28  DHCSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQ 66
           D    C FG+ +Y    +WHP +  PFG   CVTC C +
Sbjct: 854 DGAGSCRFGRHWYPNHERWHPTV-PPFGEMKCVTCTCAE 891


>sp|Q9H2X0|CHRD_HUMAN Chordin OS=Homo sapiens GN=CHRD PE=1 SV=2
          Length = 955

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
          C FG + Y +   WHPDLGEPFGV  CV C C
Sbjct: 51 CTFGGKVYALDETWHPDLGEPFGVMRCVLCAC 82



 Score = 34.3 bits (77), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 33  CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
           C F  +++     WHP +  PFG   C+TC C
Sbjct: 872 CRFAGQWFPESQSWHPSV-PPFGEMSCITCRC 902



 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 43  GAKWHPDLGEPFGVYHCVTCEC 64
           G +WHP +  PFG+  C  C C
Sbjct: 796 GTRWHPVV-PPFGLIKCAVCTC 816


>sp|Q9Z0E2|CHRD_MOUSE Chordin OS=Mus musculus GN=Chrd PE=1 SV=1
          Length = 948

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
          C FG + Y +   WHPDLGEPFGV  CV C C
Sbjct: 51 CSFGGKVYALDETWHPDLGEPFGVMRCVLCAC 82



 Score = 34.3 bits (77), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 33  CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
           C F  +++     WHP +  PFG   C+TC C
Sbjct: 867 CRFAGQWFPENQSWHPSV-PPFGEMSCITCRC 897



 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 43  GAKWHPDLGEPFGVYHCVTCEC 64
           G +WHP +  PFG+  C  C C
Sbjct: 791 GTRWHPVV-PPFGLIKCAVCTC 811


>sp|Q63148|CHRD_RAT Chordin OS=Rattus norvegicus GN=Chrd PE=2 SV=2
          Length = 951

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
          C FG + Y +   WHPDLGEPFGV  CV C C
Sbjct: 51 CSFGGKVYALDETWHPDLGEPFGVMRCVLCAC 82



 Score = 34.3 bits (77), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 33  CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
           C F  +++     WHP +  PFG   C+TC C
Sbjct: 870 CRFAGQWFPENQSWHPSV-PPFGEMSCITCRC 900



 Score = 29.6 bits (65), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 43  GAKWHPDLGEPFGVYHCVTCEC 64
           G +WHP +  PFG+  C  C C
Sbjct: 794 GTRWHP-VVPPFGLIKCAVCTC 814


>sp|Q920C1|CRDL1_MOUSE Chordin-like protein 1 OS=Mus musculus GN=Chrdl1 PE=1 SV=1
          Length = 447

 Score = 39.3 bits (90), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQVSRI 70
          CVF  + Y +G KWHP L EP+G+ +CV C C +   +
Sbjct: 32 CVFQDKKYRVGEKWHPYL-EPYGLVYCVNCICSENGNV 68



 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29  HCSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
           H   CV   + Y  G  WHP+L   FG+  CV C C
Sbjct: 251 HGQVCVSNGKTYSHGESWHPNL-RAFGIVECVLCTC 285


>sp|Q90ZD5|CRDL1_CHICK Chordin-like protein 1 OS=Gallus gallus GN=CHRDL1 PE=2 SV=1
          Length = 456

 Score = 38.1 bits (87), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQVSRI 70
          CVF  + Y +G +WHP L EP+G+ +CV C C +   +
Sbjct: 38 CVFQDKKYRVGERWHPYL-EPYGLVYCVNCLCSENGNV 74



 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29  HCSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
           H   CV   + Y  G  WHP+L   FG+  CV C C
Sbjct: 260 HGRVCVSNGKTYSHGESWHPNL-RAFGIVECVLCTC 294


>sp|Q76LD0|CRDL1_RAT Chordin-like protein 1 OS=Rattus norvegicus GN=Chrdl1 PE=2 SV=2
          Length = 447

 Score = 37.7 bits (86), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQVSRI 70
          C+F  + Y +G KWHP L EP+G+ +CV C C +   +
Sbjct: 32 CMFQDKKYRVGEKWHPYL-EPYGLVYCVNCICSENGNV 68



 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29  HCSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
           H   CV   + Y  G  WHP+L   FG+  CV C C
Sbjct: 251 HGQVCVSNGKTYSHGESWHPNL-RAFGIVECVLCTC 285


>sp|Q9BU40|CRDL1_HUMAN Chordin-like protein 1 OS=Homo sapiens GN=CHRDL1 PE=1 SV=1
          Length = 450

 Score = 37.0 bits (84), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQVSRI 70
          C+F  + Y +G +WHP L EP+G+ +CV C C +   +
Sbjct: 31 CMFQDKKYRVGERWHPYL-EPYGLVYCVNCICSENGNV 67



 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29  HCSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
           H   CV   + Y  G  WHP+L   FG+  CV C C
Sbjct: 250 HGQVCVSNGKTYSHGESWHPNL-RAFGIVECVLCTC 284


>sp|Q8VEA6|CRDL2_MOUSE Chordin-like protein 2 OS=Mus musculus GN=Chrdl2 PE=1 SV=1
          Length = 426

 Score = 36.2 bits (82), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQ 66
          C+FG++ Y  G  WHP L EP G  +CV C C +
Sbjct: 33 CLFGEKIYTPGQSWHPYL-EPQGTIYCVRCTCSE 65


>sp|Q6WN34|CRDL2_HUMAN Chordin-like protein 2 OS=Homo sapiens GN=CHRDL2 PE=1 SV=1
          Length = 429

 Score = 30.8 bits (68), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 33 CVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQVSRI 70
          C+F  + Y  G  WHP L EP G+ +C+ C C + + +
Sbjct: 33 CLFHGKRYSPGESWHPYL-EPQGLMYCLRCTCSEGAHV 69


>sp|Q62920|PDLI5_RAT PDZ and LIM domain protein 5 OS=Rattus norvegicus GN=Pdlim5 PE=1
           SV=2
          Length = 591

 Score = 30.4 bits (67), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 11  QSTHIDFIHMTLLCTALDHCSKCVFGKEFYEIGAKWHPDLGEPFGVYHC 59
           ++ HI     T +C    HC++ + G     +G  WHP   E F   HC
Sbjct: 402 RAEHIPAGKRTPMCA---HCNQAIRGPFLVALGKSWHP---EEFNCAHC 444


>sp|Q8CI51|PDLI5_MOUSE PDZ and LIM domain protein 5 OS=Mus musculus GN=Pdlim5 PE=1 SV=4
          Length = 591

 Score = 30.0 bits (66), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 11  QSTHIDFIHMTLLCTALDHCSKCVFGKEFYEIGAKWHPDLGEPFGVYHC 59
           ++ HI     T +C    HC++ + G     +G  WHP   E F   HC
Sbjct: 402 RAEHIPAGKRTPMCA---HCNQVIRGPFLVALGKSWHP---EEFNCAHC 444


>sp|Q96HC4|PDLI5_HUMAN PDZ and LIM domain protein 5 OS=Homo sapiens GN=PDLIM5 PE=1 SV=5
          Length = 596

 Score = 30.0 bits (66), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 11  QSTHIDFIHMTLLCTALDHCSKCVFGKEFYEIGAKWHPDLGEPFGVYHC 59
           ++ HI     T +C    HC++ + G     +G  WHP   E F   HC
Sbjct: 407 RAEHIPAGKRTPMCA---HCNQVIRGPFLVALGKSWHP---EEFNCAHC 449


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.332    0.144    0.540 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,596,323
Number of Sequences: 539616
Number of extensions: 870489
Number of successful extensions: 1894
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1855
Number of HSP's gapped (non-prelim): 40
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)