Query psy15162
Match_columns 70
No_of_seqs 103 out of 112
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 22:10:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5m_A Cartilage, alpha 1 type 97.8 1.7E-05 5.7E-10 47.6 3.1 31 29-67 6-36 (73)
2 3bk3_C Crossveinless 2, bone m 94.8 0.012 3.9E-07 35.4 1.6 26 40-68 11-36 (67)
3 1o9a_A Fibronectin; cell adhes 88.9 0.36 1.2E-05 31.2 3.2 33 30-68 2-35 (93)
4 3ix0_A Beta-microseminoprotein 83.3 0.86 3E-05 28.9 2.7 32 27-66 12-44 (94)
5 3ejh_A Fibronectin; fibronecti 80.6 1.9 6.4E-05 27.9 3.6 32 32-67 2-33 (93)
6 2cg7_A Fibronectin; signaling 65.6 14 0.00048 23.3 4.9 33 30-65 46-78 (90)
7 2rl0_A Fibronectin; 4F15F1, be 62.9 23 0.0008 22.4 5.5 31 32-66 47-79 (89)
8 1xhh_A Beta-microseminoprotein 60.7 6.6 0.00023 24.9 2.7 29 31-67 13-42 (91)
9 2kn0_A FN14; tweak, TNF recept 52.9 3.9 0.00013 25.1 0.6 17 41-63 6-22 (66)
10 2eqp_A Tumor necrosis factor r 50.3 5.1 0.00017 23.4 0.8 16 41-62 17-32 (50)
11 2ec3_A Fibronectin; complement 42.5 7.8 0.00027 23.8 0.8 33 30-66 17-49 (68)
12 3m7p_A FN1 protein; fibronecti 40.9 23 0.00078 26.6 3.3 33 24-64 259-293 (308)
13 2kmz_A Tumor necrosis factor r 34.7 4.1 0.00014 24.1 -1.3 16 41-62 10-25 (53)
14 2d8z_A Four and A half LIM dom 26.6 19 0.00064 19.4 0.6 14 37-50 18-31 (70)
15 1nyp_A Pinch protein; LIM doma 22.6 44 0.0015 17.7 1.6 15 36-50 17-31 (66)
16 1a7i_A QCRP2 (LIM1); LIM domai 20.6 36 0.0012 18.8 1.0 21 37-63 21-41 (81)
No 1
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=97.78 E-value=1.7e-05 Score=47.65 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=27.1
Q ss_pred CCCCcEECCEEecCCCEEeeccCCCcceEEeEEEEEecC
Q psy15162 29 HCSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQV 67 (70)
Q Consensus 29 ~~~gC~Fgg~~Y~~Ge~WHP~Lg~PFG~M~CI~C~C~~~ 67 (70)
..++|.++|+.|++|++|+|+ .|..|+|.+.
T Consensus 6 ~~~~C~~~G~~y~~ge~W~~d--------~C~~C~C~~G 36 (73)
T 1u5m_A 6 EAGSCVQDGQRYNDKDVWKPE--------PCRICVCDTG 36 (73)
T ss_dssp CCSCEESSSCEECSSCEECSC--------SSEEEEEETT
T ss_pred cCCCeeECCEEEcCCCEECCc--------CcCceECCCC
Confidence 457899999999999999995 3999999864
No 2
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=94.79 E-value=0.012 Score=35.36 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=18.6
Q ss_pred ecCCCEEeeccCCCcceEEeEEEEEecCc
Q psy15162 40 YEIGAKWHPDLGEPFGVYHCVTCECVQVS 68 (70)
Q Consensus 40 Y~~Ge~WHP~Lg~PFG~M~CI~C~C~~~~ 68 (70)
+.+|++|+ + .+++.+.|+.|+|++.+
T Consensus 11 ~~eGe~~~--~-~~~~~~~C~~C~C~~G~ 36 (67)
T 3bk3_C 11 ENEGEVLH--I-PNITDNPCISCVCLNQK 36 (67)
T ss_dssp SSTTCEEC--C-TTTTTSTTEEEEECSSB
T ss_pred EECCEEEe--C-CCccCCCcceeEecCCc
Confidence 45566665 3 35678999999998753
No 3
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A
Probab=88.86 E-value=0.36 Score=31.19 Aligned_cols=33 Identities=27% Similarity=0.582 Sum_probs=24.9
Q ss_pred CCCcEECCEEecCCCEEe-eccCCCcceEEeEEEEEecCc
Q psy15162 30 CSKCVFGKEFYEIGAKWH-PDLGEPFGVYHCVTCECVQVS 68 (70)
Q Consensus 30 ~~gC~Fgg~~Y~~Ge~WH-P~Lg~PFG~M~CI~C~C~~~~ 68 (70)
..+|.-+|+.|..|++|- |.+ |.| ..|+|-..+
T Consensus 2 ~~~C~d~G~~Y~iGeqWer~~~----G~~--l~CTC~G~g 35 (93)
T 1o9a_A 2 KPGCYDNGKHYQINQQWERTYL----GNA--LVCTCYGGS 35 (93)
T ss_dssp CSSCBCSSCBCCTTCEEEEEET----TEE--EEEEECSST
T ss_pred CceEEcCCeEeecCCEEeeccC----CCE--EEEEEcCCC
Confidence 467999999999999995 554 666 457775544
No 4
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Probab=83.27 E-value=0.86 Score=28.89 Aligned_cols=32 Identities=31% Similarity=0.728 Sum_probs=23.9
Q ss_pred cCCCCCcE-ECCEEecCCCEEeeccCCCcceEEeEEEEEec
Q psy15162 27 LDHCSKCV-FGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQ 66 (70)
Q Consensus 27 ~~~~~gC~-Fgg~~Y~~Ge~WHP~Lg~PFG~M~CI~C~C~~ 66 (70)
.++..+|. ..|+.|..|++|-=.= |..|+|.+
T Consensus 12 ~~~~~~C~D~dG~~h~l~S~W~T~~--------C~~C~C~~ 44 (94)
T 3ix0_A 12 GDSTRKCMDLKGNKHPINSEWQTDN--------CETCTCYE 44 (94)
T ss_dssp -----CEECTTSCEECTTCEEECTT--------SEEEEECS
T ss_pred CCCCCcCCCCCCCEEeCCCEECCCC--------CcEeEecC
Confidence 35678899 8899999999998664 99999965
No 5
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*
Probab=80.62 E-value=1.9 Score=27.86 Aligned_cols=32 Identities=22% Similarity=0.630 Sum_probs=24.9
Q ss_pred CcEECCEEecCCCEEeeccCCCcceEEeEEEEEecC
Q psy15162 32 KCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQV 67 (70)
Q Consensus 32 gC~Fgg~~Y~~Ge~WHP~Lg~PFG~M~CI~C~C~~~ 67 (70)
.|..+|..|..|++|.-.- +. |.| ..|+|-..
T Consensus 2 ~C~~~g~~Y~VG~~w~k~~-e~-G~m--m~CTC~G~ 33 (93)
T 3ejh_A 2 QCIVDDITYNVQDTFHKKH-EE-GHM--LNCTCFGQ 33 (93)
T ss_dssp EEEETTEEEETTEEEEEEC-TT-SCE--EEEEEEET
T ss_pred ccEECCcEEecCCEEEecc-cC-CCE--EEeEEcCC
Confidence 4899999999999998765 44 766 57888643
No 6
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A
Probab=65.57 E-value=14 Score=23.35 Aligned_cols=33 Identities=30% Similarity=0.739 Sum_probs=23.0
Q ss_pred CCCcEECCEEecCCCEEeeccCCCcceEEeEEEEEe
Q psy15162 30 CSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECV 65 (70)
Q Consensus 30 ~~gC~Fgg~~Y~~Ge~WHP~Lg~PFG~M~CI~C~C~ 65 (70)
..-|.-+++.|..|++|.=.= +--|.| ..|+|-
T Consensus 46 ~~~C~~~g~~Y~IGetW~k~~-~~~~~~--~~CtCl 78 (90)
T 2cg7_A 46 ANRCHEGGQSYKIGDTWRRPH-ETGGYM--LECVCL 78 (90)
T ss_dssp TTEEEETTEEEETTCEEEEEC-TTSSSE--EEEEEE
T ss_pred cceeeeCCcEEecCceEeecc-ccCCce--EEEEEe
Confidence 445999999999999998763 333433 246664
No 7
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A
Probab=62.87 E-value=23 Score=22.38 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=20.9
Q ss_pred CcEEC--CEEecCCCEEeeccCCCcceEEeEEEEEec
Q psy15162 32 KCVFG--KEFYEIGAKWHPDLGEPFGVYHCVTCECVQ 66 (70)
Q Consensus 32 gC~Fg--g~~Y~~Ge~WHP~Lg~PFG~M~CI~C~C~~ 66 (70)
-|.=+ |+.|..|++|--.- --|.| ..|+|--
T Consensus 47 ~C~D~~tG~~Y~iGetW~k~~--~~G~~--~~C~C~G 79 (89)
T 2rl0_A 47 RCNDQDTRTSYRIGDTWSKKD--NRGNL--LQCICTG 79 (89)
T ss_dssp EEEETTTTEEEETTCEEEEEC--SSSCE--EEEEEEE
T ss_pred cccccCCceEEEcCceeecCc--cCCcE--EEEEEeC
Confidence 48887 89999999998331 12554 3566643
No 8
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A
Probab=60.68 E-value=6.6 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.546 Sum_probs=24.6
Q ss_pred CCcE-ECCEEecCCCEEeeccCCCcceEEeEEEEEecC
Q psy15162 31 SKCV-FGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQV 67 (70)
Q Consensus 31 ~gC~-Fgg~~Y~~Ge~WHP~Lg~PFG~M~CI~C~C~~~ 67 (70)
.+|. ..|+.+..|++|-=.= |-.|+|.+.
T Consensus 13 ~~C~D~~G~kh~l~s~W~T~d--------C~~C~C~~~ 42 (91)
T 1xhh_A 13 NECQDLKGVSHPLNSVWKTKD--------CEECTCGQD 42 (91)
T ss_dssp TEEEETTTEEEECCCCEECSS--------SEEEEECSS
T ss_pred CCCCcCCCcEEeCCCeECCCC--------ceEeEecCC
Confidence 3699 9999999999998665 999999753
No 9
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=52.85 E-value=3.9 Score=25.08 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=13.2
Q ss_pred cCCCEEeeccCCCcceEEeEEEE
Q psy15162 41 EIGAKWHPDLGEPFGVYHCVTCE 63 (70)
Q Consensus 41 ~~Ge~WHP~Lg~PFG~M~CI~C~ 63 (70)
.-|.+|.|+| .+|+.|+
T Consensus 6 prGssws~dL------dkCM~Cs 22 (66)
T 2kn0_A 6 PEGRAYSQDL------GKCMECS 22 (66)
T ss_dssp CSSEEEETTT------TEEEEST
T ss_pred CCCcccchhH------HhhcccC
Confidence 4689999999 4777764
No 10
>2eqp_A Tumor necrosis factor receptor superfamily member 12A; STN_TNFRSF12A_TNFR domain; NMR {Homo sapiens} PDB: 2rpj_A
Probab=50.26 E-value=5.1 Score=23.36 Aligned_cols=16 Identities=38% Similarity=1.061 Sum_probs=13.0
Q ss_pred cCCCEEeeccCCCcceEEeEEE
Q psy15162 41 EIGAKWHPDLGEPFGVYHCVTC 62 (70)
Q Consensus 41 ~~Ge~WHP~Lg~PFG~M~CI~C 62 (70)
+-|++|.++| -||+.|
T Consensus 17 ~~GsswS~DL------dKCMdc 32 (50)
T 2eqp_A 17 SRGSSWSADL------DKCMDC 32 (50)
T ss_dssp CTTCEEETTT------TEEECH
T ss_pred CCCcccchhh------hhhhcc
Confidence 5689999999 377776
No 11
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.54 E-value=7.8 Score=23.78 Aligned_cols=33 Identities=30% Similarity=0.616 Sum_probs=23.5
Q ss_pred CCCcEECCEEecCCCEEeeccCCCcceEEeEEEEEec
Q psy15162 30 CSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCECVQ 66 (70)
Q Consensus 30 ~~gC~Fgg~~Y~~Ge~WHP~Lg~PFG~M~CI~C~C~~ 66 (70)
...|.=+|..|..||+|--.= + -|.| ..|+|--
T Consensus 17 ~~~C~d~G~~YrIGe~W~r~~-e-~G~m--m~CtClG 49 (68)
T 2ec3_A 17 SRWCHDNGVNYKIGEKWDRQG-E-NGQM--MSCTCLG 49 (68)
T ss_dssp SSCBCSSSCCBCTTCEEEEEC-S-SSSE--EEEEEEE
T ss_pred cCceecCCeeEEcCceEeecc-c-CCCE--EEEEEec
Confidence 356888999999999997542 2 2655 4577754
No 12
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein, zinc BIN dimer, conformational change, cell adhesion; HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A* 1e8b_A* 1qo6_A 2fn2_A*
Probab=40.85 E-value=23 Score=26.55 Aligned_cols=33 Identities=36% Similarity=0.913 Sum_probs=0.0
Q ss_pred eeecCCCCCcEE--CCEEecCCCEEeeccCCCcceEEeEEEEE
Q psy15162 24 CTALDHCSKCVF--GKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64 (70)
Q Consensus 24 ~~~~~~~~gC~F--gg~~Y~~Ge~WHP~Lg~PFG~M~CI~C~C 64 (70)
|.+.|. |+- .+.+|..||+|+-.. . |.| .+|+|
T Consensus 259 C~~~d~---C~~~~~~~~y~vg~~w~k~~-~--g~~--~~c~c 293 (308)
T 3m7p_A 259 CDPVDQ---CQDSETGTFYQIGDSWEKYV-H--GVR--YQCYC 293 (308)
T ss_dssp EECBCE---EECTTTCCEEETTCEEEEEE-T--TEE--EEEEE
T ss_pred eecchh---hccCCCCcEEEcCCcccccc-c--ceE--EEeEe
No 13
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=34.66 E-value=4.1 Score=24.06 Aligned_cols=16 Identities=38% Similarity=1.061 Sum_probs=12.3
Q ss_pred cCCCEEeeccCCCcceEEeEEE
Q psy15162 41 EIGAKWHPDLGEPFGVYHCVTC 62 (70)
Q Consensus 41 ~~Ge~WHP~Lg~PFG~M~CI~C 62 (70)
.-|++|.++| -||+.|
T Consensus 10 ~~GsswS~DL------dKCmdc 25 (53)
T 2kmz_A 10 SRGSSWSADL------DKCMDC 25 (53)
T ss_dssp CSSCBCCTTT------TCCBCS
T ss_pred CCCcccchhh------hhhhcc
Confidence 4689999999 266666
No 14
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.58 E-value=19 Score=19.38 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=11.3
Q ss_pred CEEecCCCEEeecc
Q psy15162 37 KEFYEIGAKWHPDL 50 (70)
Q Consensus 37 g~~Y~~Ge~WHP~L 50 (70)
....+.|..|||.=
T Consensus 18 ~~~~a~~~~~H~~C 31 (70)
T 2d8z_A 18 GGVTYREQPWHKEC 31 (70)
T ss_dssp SEEESSSSEEETTT
T ss_pred ceEEECccccCCCC
Confidence 45778999999975
No 15
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.56 E-value=44 Score=17.66 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=11.8
Q ss_pred CCEEecCCCEEeecc
Q psy15162 36 GKEFYEIGAKWHPDL 50 (70)
Q Consensus 36 gg~~Y~~Ge~WHP~L 50 (70)
+....+.|..|||.=
T Consensus 17 ~~~~~a~~~~~H~~C 31 (66)
T 1nyp_A 17 GRVVNAMGKQWHVEH 31 (66)
T ss_dssp SCEECCTTSBEETTT
T ss_pred ceEEEECccccccCc
Confidence 445778899999975
No 16
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.59 E-value=36 Score=18.83 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=15.0
Q ss_pred CEEecCCCEEeeccCCCcceEEeEEEE
Q psy15162 37 KEFYEIGAKWHPDLGEPFGVYHCVTCE 63 (70)
Q Consensus 37 g~~Y~~Ge~WHP~Lg~PFG~M~CI~C~ 63 (70)
....+.|..|||.= -+|..|.
T Consensus 21 ~~~~a~~~~~H~~C------F~C~~C~ 41 (81)
T 1a7i_A 21 EEVQCDGRSFHRCC------FLCMVCR 41 (81)
T ss_dssp TEEEETTEEEESSS------EECSSSC
T ss_pred eeEEeCCccccccc------CccCCCC
Confidence 35677899999986 5565554
Done!