RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15162
         (70 letters)



>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds,
          two SUB-domain architecture, beta-sheet, structural
          protein; NMR {Homo sapiens} SCOP: g.27.1.2
          Length = 73

 Score = 25.7 bits (56), Expect = 0.60
 Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 8/38 (21%)

Query: 27 LDHCSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
                CV   + Y     W P+         C  C C
Sbjct: 4  FQEAGSCVQDGQRYNDKDVWKPE--------PCRICVC 33


>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein
           degradation, NUCL excision repair, peptide:N-glycanase;
           1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
          Length = 295

 Score = 26.2 bits (57), Expect = 0.73
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 16  DFIH-MTLLCTALDHCSKCVFGKEFYEIGAKWHPDLGEPFGVYHC 59
           ++ +  TL C AL   ++ V+    +     + P          C
Sbjct: 145 EWANCFTLCCRALGFEARYVWDYTDHVWTEVYSPSQQRWLHCDAC 189


>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate
           dehydrogenase activity, cell inner membrane, trica acid
           cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
           1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B*
           2wu5_B* 2wp9_B*
          Length = 238

 Score = 25.7 bits (57), Expect = 1.2
 Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 50  LGEPFGVYHCVTC-ECVQV 67
           L + F V+ C +   CV V
Sbjct: 197 LSDAFSVFRCHSIMNCVSV 215


>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein,
           reductase, mitochondria MEMB oxidoreductase; HET: FAD
           HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
          Length = 282

 Score = 25.5 bits (56), Expect = 1.4
 Identities = 4/19 (21%), Positives = 8/19 (42%), Gaps = 1/19 (5%)

Query: 50  LGEPFGVYHCVTC-ECVQV 67
           + + F  + C T   C + 
Sbjct: 230 MQDGFSAFKCHTIMNCTKT 248


>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate
           reductace, succinate dehydrogenase, CO quinol, quinone,
           oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
           coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B*
           2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
          Length = 243

 Score = 25.3 bits (56), Expect = 1.6
 Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)

Query: 50  LGEPFGVYHCVTC-ECVQV 67
           L    GV+ C     C +V
Sbjct: 195 LNSQNGVWSCTFVGYCSEV 213


>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein,
           heme protein, iron sulfur PROT cytochrome B,
           oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
           gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B*
           3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B*
           3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B*
           3aee_B* ...
          Length = 252

 Score = 24.7 bits (54), Expect = 2.4
 Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 50  LGEPFGVYHCVTC-ECVQV 67
           L +PF +Y C T   C + 
Sbjct: 206 LQDPFSLYRCHTIMNCTRT 224


>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S,
           4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
           HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1
           d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
          Length = 241

 Score = 24.5 bits (54), Expect = 3.5
 Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)

Query: 50  LGEPFGVYHCVTC-ECVQV 67
           +G+  GV+ C+T   C  V
Sbjct: 199 IGDDDGVFGCMTLLACHDV 217


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.144    0.540 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,165,260
Number of extensions: 52545
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 19
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.6 bits)