RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15162
         (70 letters)



>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 27.2 bits (60), Expect = 0.064
 Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 8/38 (21%)

Query: 27 LDHCSKCVFGKEFYEIGAKWHPDLGEPFGVYHCVTCEC 64
                CV   + Y     W P+         C  C C
Sbjct: 4  FQEAGSCVQDGQRYNDKDVWKPE--------PCRICVC 33


>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 45

 Score = 21.6 bits (46), Expect = 4.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 29 HCSKCVFGKEFYEIGAKWHPD 49
          HC++ + G     +G  WHP+
Sbjct: 23 HCNQVIRGPFLVALGKSWHPE 43


>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 325

 Score = 22.5 bits (48), Expect = 5.9
 Identities = 6/15 (40%), Positives = 7/15 (46%)

Query: 36  GKEFYEIGAKWHPDL 50
           G E      KW P+L
Sbjct: 291 GNEIIRSACKWSPEL 305


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.144    0.540 

Gapped
Lambda     K      H
   0.267   0.0451    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 316,035
Number of extensions: 11877
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 11
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.6 bits)