Query psy15163
Match_columns 176
No_of_seqs 174 out of 1208
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 22:12:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cup_A Skeletal muscle LIM-pro 99.9 7.5E-28 2.6E-32 161.9 8.0 95 72-171 6-101 (101)
2 2xqn_T Testin, TESS; metal-bin 99.9 4.2E-27 1.4E-31 164.3 7.1 99 72-176 4-105 (126)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 1.9E-26 6.3E-31 162.0 6.6 98 72-175 3-105 (131)
4 2jtn_A LIM domain-binding prot 99.9 2.9E-25 9.9E-30 164.2 8.5 100 69-175 58-158 (182)
5 1b8t_A Protein (CRP1); LIM dom 99.9 1.3E-25 4.5E-30 167.4 6.3 99 71-175 7-153 (192)
6 2rgt_A Fusion of LIM/homeobox 99.9 1.5E-25 5.3E-30 163.9 5.8 98 71-175 6-104 (169)
7 1rut_X Flinc4, fusion protein 99.9 2.2E-25 7.6E-30 165.7 5.3 98 72-175 6-108 (188)
8 1x63_A Skeletal muscle LIM-pro 99.8 8.9E-19 3E-23 113.0 6.2 80 53-141 1-80 (82)
9 2ehe_A Four and A half LIM dom 99.8 3.6E-19 1.2E-23 114.9 3.7 81 53-142 1-81 (82)
10 1x3h_A Leupaxin; paxillin fami 99.7 1.3E-18 4.3E-23 111.8 5.3 79 53-142 1-79 (80)
11 1m3v_A FLIN4, fusion of the LI 99.7 3E-19 1E-23 123.8 2.4 79 72-157 6-88 (122)
12 2cuq_A Four and A half LIM dom 99.7 2.4E-18 8.2E-23 110.5 5.3 79 53-142 1-79 (80)
13 1iml_A CRIP, cysteine rich int 99.7 2.7E-18 9.3E-23 109.2 3.9 69 73-147 2-71 (76)
14 1a7i_A QCRP2 (LIM1); LIM domai 99.7 2.4E-18 8.2E-23 110.8 3.5 71 71-147 7-77 (81)
15 2dlo_A Thyroid receptor-intera 99.7 1.1E-17 3.9E-22 107.6 5.6 78 53-142 2-80 (81)
16 1g47_A Pinch protein; LIM doma 99.7 1.4E-17 4.9E-22 106.0 4.4 66 71-141 11-76 (77)
17 2egq_A FHL1 protein; LIM domai 99.7 4.2E-17 1.4E-21 103.9 6.3 73 53-133 1-76 (77)
18 1x68_A FHL5 protein; four-and- 99.7 1.6E-17 5.6E-22 105.6 3.8 68 72-144 6-75 (76)
19 1x4k_A Skeletal muscle LIM-pro 99.7 3E-17 1E-21 103.2 4.6 66 72-142 6-71 (72)
20 2dar_A PDZ and LIM domain prot 99.7 7.1E-17 2.4E-21 105.9 6.4 65 71-142 25-89 (90)
21 2dj7_A Actin-binding LIM prote 99.7 4.4E-17 1.5E-21 104.6 5.3 65 71-142 15-79 (80)
22 1wyh_A SLIM 2, skeletal muscle 99.7 3.9E-17 1.3E-21 102.6 4.2 66 72-142 6-71 (72)
23 2cu8_A Cysteine-rich protein 2 99.7 5.9E-17 2E-21 103.0 4.5 65 72-142 10-75 (76)
24 1x4l_A Skeletal muscle LIM-pro 99.7 1.1E-16 3.6E-21 100.7 5.6 64 72-140 6-71 (72)
25 2cur_A Skeletal muscle LIM-pro 99.6 6.5E-17 2.2E-21 100.9 3.8 64 72-142 6-69 (69)
26 1x6a_A LIMK-2, LIM domain kina 99.6 7.2E-17 2.5E-21 103.8 3.9 78 53-141 1-80 (81)
27 1j2o_A FLIN2, fusion of rhombo 99.6 1.6E-16 5.5E-21 108.7 5.4 67 72-144 4-72 (114)
28 2d8z_A Four and A half LIM dom 99.6 1.2E-16 4.2E-21 99.9 4.2 64 72-142 6-69 (70)
29 1b8t_A Protein (CRP1); LIM dom 99.6 3.3E-17 1.1E-21 121.8 1.6 71 71-147 115-185 (192)
30 2d8y_A Eplin protein; LIM doma 99.6 2.6E-16 8.7E-21 103.4 4.6 67 71-143 15-81 (91)
31 1x61_A Thyroid receptor intera 99.6 2E-16 6.8E-21 99.4 3.4 66 72-143 6-71 (72)
32 1nyp_A Pinch protein; LIM doma 99.6 2.3E-16 7.9E-21 97.5 3.3 61 72-139 6-66 (66)
33 3f6q_B LIM and senescent cell 99.6 6.3E-16 2.2E-20 96.9 4.5 62 71-136 11-72 (72)
34 1x64_A Alpha-actinin-2 associa 99.6 7.6E-16 2.6E-20 100.7 4.3 63 72-141 26-88 (89)
35 2ehe_A Four and A half LIM dom 99.6 4E-16 1.4E-20 100.5 2.3 54 122-176 1-55 (82)
36 2egq_A FHL1 protein; LIM domai 99.6 7.6E-16 2.6E-20 98.0 2.9 54 122-176 1-58 (77)
37 1x62_A C-terminal LIM domain p 99.6 3.9E-16 1.3E-20 99.9 1.4 63 72-141 16-78 (79)
38 2cor_A Pinch protein; LIM doma 99.6 2.7E-15 9.2E-20 96.0 5.2 64 70-141 14-77 (79)
39 2d8x_A Protein pinch; LIM doma 99.6 2E-15 6.9E-20 94.3 4.4 62 72-140 6-67 (70)
40 2l3k_A Rhombotin-2, linker, LI 99.6 8.5E-16 2.9E-20 106.4 2.6 74 73-151 10-84 (123)
41 1x3h_A Leupaxin; paxillin fami 99.5 1.8E-15 6.3E-20 96.9 2.4 53 122-176 1-53 (80)
42 1x6a_A LIMK-2, LIM domain kina 99.5 1.7E-15 5.9E-20 97.2 2.3 51 123-175 2-52 (81)
43 2cuq_A Four and A half LIM dom 99.5 2.1E-15 7.1E-20 96.6 2.5 53 122-176 1-53 (80)
44 2co8_A NEDD9 interacting prote 99.5 1.8E-15 6E-20 97.5 2.1 61 71-136 15-77 (82)
45 1rut_X Flinc4, fusion protein 99.5 2.6E-15 8.7E-20 111.3 2.7 107 52-167 52-170 (188)
46 1v6g_A Actin binding LIM prote 99.5 3.7E-15 1.3E-19 95.7 3.0 51 123-175 2-52 (81)
47 2l4z_A DNA endonuclease RBBP8, 99.5 9.5E-15 3.2E-19 101.1 4.3 61 71-136 61-123 (123)
48 1v6g_A Actin binding LIM prote 99.5 1.2E-14 4.1E-19 93.3 4.5 74 53-136 1-75 (81)
49 2dlo_A Thyroid receptor-intera 99.5 5.3E-15 1.8E-19 95.0 2.5 52 122-176 2-53 (81)
50 1x63_A Skeletal muscle LIM-pro 99.5 6.4E-15 2.2E-19 94.7 2.6 54 122-176 1-55 (82)
51 2iyb_E Testin, TESS, TES; LIM 99.5 2E-14 6.9E-19 88.5 4.6 59 72-134 3-64 (65)
52 1wig_A KIAA1808 protein; LIM d 99.5 1.6E-14 5.4E-19 91.0 3.3 59 72-136 6-65 (73)
53 2xqn_T Testin, TESS; metal-bin 99.4 3.8E-14 1.3E-18 98.3 2.0 76 52-135 48-125 (126)
54 2rgt_A Fusion of LIM/homeobox 99.4 3.5E-14 1.2E-18 103.4 1.5 105 52-166 50-156 (169)
55 2xjy_A Rhombotin-2; oncoprotei 99.4 2.5E-14 8.7E-19 99.8 -1.0 79 52-136 49-128 (131)
56 2jtn_A LIM domain-binding prot 99.3 9.2E-13 3.1E-17 96.9 1.2 73 54-134 106-180 (182)
57 1wig_A KIAA1808 protein; LIM d 99.1 1.5E-11 5.1E-16 77.2 2.6 41 133-175 2-42 (73)
58 1nyp_A Pinch protein; LIM doma 99.1 1.8E-11 6.2E-16 75.2 2.9 42 133-176 2-43 (66)
59 2cu8_A Cysteine-rich protein 2 99.1 3.8E-11 1.3E-15 75.8 3.3 42 134-176 7-48 (76)
60 1x68_A FHL5 protein; four-and- 99.1 3.3E-11 1.1E-15 76.1 3.0 43 133-176 2-47 (76)
61 1wyh_A SLIM 2, skeletal muscle 99.1 5.3E-11 1.8E-15 74.2 3.3 43 133-176 2-45 (72)
62 1x4l_A Skeletal muscle LIM-pro 99.1 6.1E-11 2.1E-15 74.0 3.5 42 134-176 3-47 (72)
63 1x4k_A Skeletal muscle LIM-pro 99.1 4.9E-11 1.7E-15 74.4 3.0 43 133-176 2-45 (72)
64 1iml_A CRIP, cysteine rich int 99.1 6.8E-11 2.3E-15 74.6 2.8 39 138-176 1-39 (76)
65 2dar_A PDZ and LIM domain prot 99.1 6.9E-11 2.3E-15 77.1 2.9 48 127-176 16-63 (90)
66 2iyb_E Testin, TESS, TES; LIM 99.0 6.9E-11 2.4E-15 72.4 2.6 41 135-176 1-44 (65)
67 2dj7_A Actin-binding LIM prote 99.0 8.1E-11 2.8E-15 75.1 2.9 38 138-175 16-53 (80)
68 1x61_A Thyroid receptor intera 99.0 1.2E-10 4E-15 72.7 3.5 41 134-175 3-44 (72)
69 2d8z_A Four and A half LIM dom 99.0 1.2E-10 4E-15 72.3 3.4 41 134-176 3-43 (70)
70 2cor_A Pinch protein; LIM doma 99.0 1.1E-10 3.9E-15 74.2 3.0 41 134-176 13-53 (79)
71 2co8_A NEDD9 interacting prote 99.0 1.1E-10 3.6E-15 74.9 2.8 39 138-176 16-54 (82)
72 2d8x_A Protein pinch; LIM doma 99.0 1.5E-10 5.2E-15 71.8 3.1 38 138-176 6-43 (70)
73 2cur_A Skeletal muscle LIM-pro 99.0 1.5E-10 5.1E-15 71.6 3.0 40 134-175 3-42 (69)
74 3f6q_B LIM and senescent cell 99.0 9.9E-11 3.4E-15 72.8 2.0 42 133-175 8-50 (72)
75 1a7i_A QCRP2 (LIM1); LIM domai 99.0 1.7E-10 5.9E-15 73.6 2.9 39 138-176 8-46 (81)
76 2l4z_A DNA endonuclease RBBP8, 99.0 2.7E-10 9.1E-15 78.6 3.0 42 133-175 58-99 (123)
77 2d8y_A Eplin protein; LIM doma 99.0 2.9E-10 1E-14 74.2 3.0 39 138-176 16-54 (91)
78 2l3k_A Rhombotin-2, linker, LI 99.0 1.9E-10 6.4E-15 79.3 2.2 44 131-175 1-47 (123)
79 1j2o_A FLIN2, fusion of rhombo 98.9 4E-10 1.4E-14 76.6 3.2 38 138-175 4-41 (114)
80 1g47_A Pinch protein; LIM doma 98.9 3.4E-10 1.2E-14 71.5 2.6 41 134-175 9-50 (77)
81 1x64_A Alpha-actinin-2 associa 98.9 5.9E-10 2E-14 72.4 2.9 38 138-176 26-63 (89)
82 1x62_A C-terminal LIM domain p 98.9 4.8E-10 1.7E-14 71.2 2.1 37 138-175 16-52 (79)
83 1m3v_A FLIN4, fusion of the LI 98.9 4.1E-10 1.4E-14 77.5 1.4 41 134-175 3-43 (122)
84 2cup_A Skeletal muscle LIM-pro 98.8 1.5E-09 5.2E-14 72.0 3.2 42 134-176 3-45 (101)
85 1zfo_A LAsp-1; LIM domain, zin 98.0 1.1E-06 3.7E-11 45.5 1.0 28 138-165 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.0 9.3E-07 3.2E-11 45.7 -0.1 28 72-104 4-31 (31)
87 3vk6_A E3 ubiquitin-protein li 83.9 0.7 2.4E-05 29.9 2.5 43 106-149 4-49 (101)
88 2ysm_A Myeloid/lymphoid or mix 82.5 1.3 4.5E-05 28.9 3.6 74 73-165 9-84 (111)
89 2kwj_A Zinc finger protein DPF 82.3 1.2 4.2E-05 29.4 3.3 39 121-166 49-89 (114)
90 2ecy_A TNF receptor-associated 81.7 0.67 2.3E-05 27.0 1.7 46 104-150 16-63 (66)
91 2ysl_A Tripartite motif-contai 79.9 1.3 4.6E-05 26.1 2.7 29 122-150 38-70 (73)
92 2djb_A Polycomb group ring fin 79.5 0.95 3.3E-05 26.9 1.9 49 104-153 16-66 (72)
93 1t1h_A Gspef-atpub14, armadill 79.5 1.4 4.7E-05 26.5 2.7 51 102-153 7-59 (78)
94 1jm7_B BARD1, BRCA1-associated 76.6 1.9 6.5E-05 28.2 2.9 43 104-148 23-66 (117)
95 2egp_A Tripartite motif-contai 74.4 2.4 8E-05 25.3 2.7 14 138-151 54-67 (79)
96 2d8t_A Dactylidin, ring finger 73.4 3.3 0.00011 24.3 3.1 29 122-150 33-62 (71)
97 4ap4_A E3 ubiquitin ligase RNF 72.7 1.7 5.8E-05 28.7 1.8 73 72-153 49-129 (133)
98 1e4u_A Transcriptional repress 72.7 2.8 9.6E-05 25.6 2.7 48 104-152 12-65 (78)
99 1g25_A CDK-activating kinase a 72.4 2.8 9.5E-05 24.1 2.6 49 104-153 4-59 (65)
100 3l11_A E3 ubiquitin-protein li 70.6 3.1 0.0001 27.0 2.7 44 104-148 16-61 (115)
101 2ecw_A Tripartite motif-contai 70.5 2.1 7.3E-05 25.8 1.8 15 138-152 60-74 (85)
102 4ayc_A E3 ubiquitin-protein li 69.6 3 0.0001 28.1 2.6 26 123-149 72-99 (138)
103 2kre_A Ubiquitin conjugation f 69.3 4.7 0.00016 25.7 3.4 51 101-153 27-79 (100)
104 2ecn_A Ring finger protein 141 69.2 3.8 0.00013 23.8 2.7 28 122-149 32-60 (70)
105 2ecv_A Tripartite motif-contai 69.1 2.6 8.9E-05 25.4 2.0 14 138-151 60-73 (85)
106 2y43_A E3 ubiquitin-protein li 68.5 2.1 7.2E-05 27.0 1.5 46 104-151 23-71 (99)
107 1jjd_A Metallothionein, SMTA; 68.2 3.7 0.00013 23.4 2.3 30 105-134 9-39 (55)
108 1wgm_A Ubiquitin conjugation f 67.2 5.2 0.00018 25.4 3.2 51 101-153 20-73 (98)
109 2gvi_A Conserved hypothetical 66.7 2.2 7.6E-05 31.2 1.5 30 104-133 173-202 (204)
110 2csy_A Zinc finger protein 183 63.4 2.2 7.6E-05 25.8 0.8 25 123-148 34-60 (81)
111 1jm7_A BRCA1, breast cancer ty 62.3 2.6 8.9E-05 27.0 1.1 46 105-151 23-72 (112)
112 2kr4_A Ubiquitin conjugation f 62.1 5.1 0.00017 24.6 2.4 51 101-153 12-64 (85)
113 3hcs_A TNF receptor-associated 61.7 4.1 0.00014 28.4 2.1 10 73-82 20-29 (170)
114 2jrp_A Putative cytoplasmic pr 61.4 2.4 8.1E-05 26.3 0.7 10 73-82 4-13 (81)
115 2xeu_A Ring finger protein 4; 59.3 1.6 5.5E-05 24.8 -0.4 32 121-153 27-60 (64)
116 3lrq_A E3 ubiquitin-protein li 58.9 3.1 0.00011 26.4 0.9 49 104-153 23-74 (100)
117 1rmd_A RAG1; V(D)J recombinati 58.9 4.4 0.00015 26.3 1.8 46 104-151 24-72 (116)
118 2ecg_A Baculoviral IAP repeat- 57.3 9.1 0.00031 22.7 2.9 25 122-149 43-68 (75)
119 2ckl_A Polycomb group ring fin 57.1 4.1 0.00014 26.1 1.3 46 103-149 15-62 (108)
120 1bor_A Transcription factor PM 56.6 4.2 0.00014 22.7 1.1 24 123-148 25-48 (56)
121 2ct0_A Non-SMC element 1 homol 56.5 2.4 8.2E-05 25.7 0.1 12 103-114 15-26 (74)
122 2dmj_A Poly (ADP-ribose) polym 55.9 3.8 0.00013 26.7 1.0 22 68-89 22-43 (106)
123 1chc_A Equine herpes virus-1 r 55.6 3.6 0.00012 23.8 0.7 25 123-148 25-51 (68)
124 3hct_A TNF receptor-associated 55.4 4.3 0.00015 26.5 1.2 10 73-82 20-29 (118)
125 2eqg_A Tumor necrosis factor, 52.8 6.6 0.00023 21.2 1.4 18 117-134 20-38 (49)
126 2yur_A Retinoblastoma-binding 52.8 4.5 0.00015 24.0 0.9 27 123-149 35-64 (74)
127 2ecm_A Ring finger and CHY zin 51.9 4.1 0.00014 22.3 0.6 9 139-147 45-53 (55)
128 1iym_A EL5; ring-H2 finger, ub 51.2 14 0.00046 20.0 2.8 10 138-147 44-53 (55)
129 1v9x_A Poly (ADP-ribose) polym 50.7 6.8 0.00023 25.8 1.6 22 69-90 18-39 (114)
130 4g9i_A Hydrogenase maturation 50.1 30 0.001 30.5 5.9 85 68-174 103-188 (772)
131 2c2l_A CHIP, carboxy terminus 49.8 8 0.00027 28.8 2.1 52 100-153 205-259 (281)
132 4ic3_A E3 ubiquitin-protein li 49.7 17 0.00059 21.4 3.3 25 122-149 42-67 (74)
133 2ckl_B Ubiquitin ligase protei 49.6 5.4 0.00019 27.6 1.0 43 104-148 55-101 (165)
134 1weo_A Cellulose synthase, cat 49.1 13 0.00045 23.3 2.6 23 125-147 44-68 (93)
135 3fl2_A E3 ubiquitin-protein li 49.0 5.5 0.00019 26.1 1.0 29 121-149 69-99 (124)
136 2ct2_A Tripartite motif protei 48.6 6.4 0.00022 23.8 1.1 13 138-150 57-69 (88)
137 2vpb_A Hpygo1, pygopus homolog 48.5 5.2 0.00018 23.5 0.7 29 73-103 10-39 (65)
138 3oue_A Cytochrome C family pro 48.3 19 0.00064 25.1 3.6 59 56-115 56-117 (158)
139 1uw0_A DNA ligase III; DNA rep 48.2 6.4 0.00022 26.1 1.1 20 70-89 14-33 (117)
140 3ng2_A RNF4, snurf, ring finge 47.9 2.4 8.2E-05 24.7 -1.0 29 122-151 35-65 (71)
141 3ztg_A E3 ubiquitin-protein li 47.4 9.1 0.00031 23.5 1.7 44 103-147 13-60 (92)
142 3nw0_A Non-structural maintena 47.2 5 0.00017 30.0 0.6 37 138-174 181-227 (238)
143 1x4j_A Ring finger protein 38; 47.1 6 0.00021 23.3 0.8 46 102-148 22-71 (75)
144 2ect_A Ring finger protein 126 45.9 6.4 0.00022 23.3 0.8 16 72-87 16-31 (78)
145 1znf_A 31ST zinc finger from X 45.7 8.6 0.0003 16.6 1.1 11 165-175 2-12 (27)
146 2kvh_A Zinc finger and BTB dom 45.4 8.2 0.00028 16.9 1.0 11 165-175 4-14 (27)
147 2e6s_A E3 ubiquitin-protein li 45.4 13 0.00043 22.6 2.1 27 139-165 28-56 (77)
148 2dmi_A Teashirt homolog 3; zin 45.2 3.8 0.00013 26.0 -0.3 12 164-175 80-91 (115)
149 3odc_A Poly [ADP-ribose] polym 44.8 8.1 0.00028 25.3 1.2 19 70-88 18-36 (111)
150 2jne_A Hypothetical protein YF 44.8 4.9 0.00017 25.8 0.1 10 73-82 34-43 (101)
151 4gne_A Histone-lysine N-methyl 44.4 40 0.0014 21.8 4.5 43 73-130 17-59 (107)
152 1z6u_A NP95-like ring finger p 44.4 8.1 0.00028 26.5 1.2 46 104-150 79-126 (150)
153 2ecj_A Tripartite motif-contai 44.2 17 0.00059 19.7 2.5 10 73-82 17-26 (58)
154 2ea6_A Ring finger protein 4; 42.5 3.5 0.00012 23.7 -0.8 10 138-147 57-66 (69)
155 1ard_A Yeast transcription fac 42.3 10 0.00035 16.6 1.1 11 165-175 3-13 (29)
156 2cs3_A Protein C14ORF4, MY039 41.9 7.4 0.00025 24.0 0.6 54 104-169 16-69 (93)
157 2f42_A STIP1 homology and U-bo 41.5 14 0.00048 26.3 2.1 51 101-153 104-157 (179)
158 2kvf_A Zinc finger and BTB dom 41.3 10 0.00036 16.6 1.0 11 165-175 4-14 (28)
159 2d8v_A Zinc finger FYVE domain 40.9 6.8 0.00023 23.2 0.3 15 120-134 24-38 (67)
160 1rik_A E6APC1 peptide; E6-bind 40.2 11 0.00038 16.5 1.1 11 165-175 3-13 (29)
161 2kvg_A Zinc finger and BTB dom 40.2 9.8 0.00033 16.7 0.8 11 165-175 4-14 (27)
162 1paa_A Yeast transcription fac 39.7 11 0.00039 16.7 1.0 11 165-175 3-13 (30)
163 2m0f_A Zinc finger and BTB dom 39.1 12 0.0004 16.4 1.0 11 165-175 3-13 (29)
164 3knv_A TNF receptor-associated 38.4 8.7 0.0003 26.1 0.6 43 104-147 32-76 (141)
165 2lvu_A Zinc finger and BTB dom 44.0 6.9 0.00023 17.0 0.0 10 165-174 3-12 (26)
166 2ea5_A Cell growth regulator w 37.3 29 0.001 20.1 2.8 21 126-149 38-58 (68)
167 2m0e_A Zinc finger and BTB dom 36.7 13 0.00044 16.2 0.9 10 165-174 3-12 (29)
168 2m0d_A Zinc finger and BTB dom 36.6 13 0.00045 16.3 1.0 11 165-175 4-14 (30)
169 2ep4_A Ring finger protein 24; 36.5 14 0.00049 21.4 1.4 11 138-148 53-63 (74)
170 2yho_A E3 ubiquitin-protein li 36.3 38 0.0013 20.2 3.3 41 105-149 20-61 (79)
171 1klr_A Zinc finger Y-chromosom 36.3 14 0.00047 16.2 1.0 11 165-175 3-13 (30)
172 3od8_A Poly [ADP-ribose] polym 36.3 13 0.00043 24.7 1.1 19 70-88 37-55 (116)
173 1wev_A Riken cDNA 1110020M19; 35.5 14 0.00047 23.0 1.2 54 73-133 18-72 (88)
174 1fv5_A First zinc finger of U- 34.9 14 0.00047 18.6 0.9 12 164-175 8-19 (36)
175 2ysj_A Tripartite motif-contai 34.7 13 0.00046 20.8 1.0 10 73-82 22-31 (63)
176 2elx_A Zinc finger protein 406 34.4 15 0.0005 17.1 1.0 12 164-175 7-18 (35)
177 3d00_A Tungsten formylmethanof 34.0 12 0.00041 27.0 0.8 28 102-135 162-189 (191)
178 2cs2_A Poly [ADP-ribose] polym 33.4 23 0.0008 23.9 2.1 22 69-90 25-46 (134)
179 1srk_A Zinc finger protein ZFP 33.4 16 0.00054 17.1 1.0 11 165-175 8-18 (35)
180 1p7a_A BF3, BKLF, kruppel-like 32.7 16 0.00055 17.3 1.0 12 164-175 11-22 (37)
181 2elr_A Zinc finger protein 406 32.1 18 0.00061 16.9 1.1 11 165-175 10-20 (36)
182 4av1_A Poly [ADP-ribose] polym 31.5 10 0.00034 28.1 0.0 38 69-106 37-80 (223)
183 2yu4_A E3 SUMO-protein ligase 31.2 23 0.00078 22.0 1.7 50 102-152 6-66 (94)
184 2elq_A Zinc finger protein 406 31.0 19 0.00065 16.9 1.1 11 165-175 10-20 (36)
185 2bay_A PRE-mRNA splicing facto 30.9 20 0.00069 20.4 1.3 49 104-153 4-54 (61)
186 1rim_A E6APC2 peptide; E6-bind 30.6 18 0.00063 16.8 1.0 11 165-175 3-13 (33)
187 2lvr_A Zinc finger and BTB dom 36.5 11 0.00037 16.7 0.0 10 165-174 4-13 (30)
188 2kiz_A E3 ubiquitin-protein li 29.7 19 0.00066 20.5 1.1 14 72-85 15-28 (69)
189 2lvt_A Zinc finger and BTB dom 35.8 11 0.00038 16.6 0.0 10 165-174 3-12 (29)
190 2elp_A Zinc finger protein 406 29.6 20 0.00067 17.0 1.0 12 164-175 9-20 (37)
191 2elm_A Zinc finger protein 406 29.3 17 0.00057 17.5 0.7 11 165-175 10-20 (37)
192 2els_A Zinc finger protein 406 29.2 20 0.00068 16.8 0.9 11 165-175 10-20 (36)
193 2elv_A Zinc finger protein 406 28.7 21 0.00071 16.8 1.0 11 165-175 10-20 (36)
194 2jvx_A NF-kappa-B essential mo 28.6 22 0.00076 17.1 1.0 11 165-175 4-14 (28)
195 2elt_A Zinc finger protein 406 28.6 21 0.00073 16.6 1.0 12 164-175 9-20 (36)
196 2elo_A Zinc finger protein 406 28.5 20 0.00067 17.0 0.9 12 164-175 9-20 (37)
197 1we9_A PHD finger family prote 26.7 40 0.0014 19.1 2.1 51 73-133 8-58 (64)
198 1njq_A Superman protein; zinc- 26.7 23 0.00079 17.1 0.9 12 164-175 6-17 (39)
199 2e5r_A Dystrobrevin alpha; ZZ 26.1 71 0.0024 18.3 3.1 35 98-134 8-45 (63)
200 2yte_A Zinc finger protein 473 25.3 27 0.00093 17.0 1.1 11 165-175 11-21 (42)
201 2lbz_A Thuricin17, thurincin H 25.2 19 0.00066 17.1 0.4 12 163-174 6-17 (31)
202 2epv_A Zinc finger protein 268 25.0 26 0.0009 17.5 1.0 12 164-175 12-23 (44)
203 2epc_A Zinc finger protein 32; 24.9 27 0.00091 17.0 1.0 12 164-175 11-22 (42)
204 1loi_A Cyclic 3',5'-AMP specif 24.5 12 0.0004 17.2 -0.5 9 165-173 6-14 (26)
205 2csz_A Synaptotagmin-like prot 24.4 78 0.0027 19.1 3.1 9 73-81 27-35 (76)
206 2el5_A Zinc finger protein 268 24.1 28 0.00096 17.0 1.0 12 164-175 10-21 (42)
207 2en2_A B-cell lymphoma 6 prote 23.9 28 0.00095 17.0 0.9 12 164-175 11-22 (42)
208 2emg_A Zinc finger protein 484 23.5 31 0.001 17.3 1.1 12 164-175 12-23 (46)
209 2emb_A Zinc finger protein 473 23.3 30 0.001 17.1 1.0 12 164-175 12-23 (44)
210 2enf_A Zinc finger protein 347 23.3 32 0.0011 17.2 1.1 12 164-175 12-23 (46)
211 2yu5_A Zinc finger protein 473 23.3 30 0.001 17.1 1.0 11 165-175 13-23 (44)
212 2eon_A ZFP-95, zinc finger pro 23.1 32 0.0011 17.3 1.1 11 165-175 13-23 (46)
213 2ytb_A Zinc finger protein 32; 23.1 30 0.001 16.8 1.0 11 165-175 12-22 (42)
214 2en7_A Zinc finger protein 268 23.0 28 0.00097 17.1 0.9 11 165-175 13-23 (44)
215 2ept_A Zinc finger protein 32; 22.8 31 0.0011 16.7 1.0 12 164-175 10-21 (41)
216 2eos_A B-cell lymphoma 6 prote 22.8 31 0.0011 16.8 1.0 11 165-175 12-22 (42)
217 3htk_C E3 SUMO-protein ligase 22.7 49 0.0017 25.2 2.4 50 103-153 181-236 (267)
218 2em6_A Zinc finger protein 224 22.6 33 0.0011 17.2 1.1 12 164-175 12-23 (46)
219 3iuf_A Zinc finger protein UBI 22.4 31 0.001 17.8 0.9 11 165-175 8-18 (48)
220 2yts_A Zinc finger protein 484 22.4 31 0.0011 17.2 1.0 12 164-175 12-23 (46)
221 2eof_A Zinc finger protein 268 22.3 32 0.0011 16.9 1.0 12 164-175 12-23 (44)
222 2ytf_A Zinc finger protein 268 22.3 32 0.0011 17.2 1.0 12 164-175 12-23 (46)
223 2y1n_A E3 ubiquitin-protein li 22.3 55 0.0019 26.3 2.7 47 104-152 333-382 (389)
224 2emi_A Zinc finger protein 484 22.2 32 0.0011 17.2 1.0 12 164-175 12-23 (46)
225 2enh_A Zinc finger protein 28 22.1 34 0.0012 17.2 1.1 12 164-175 12-23 (46)
226 2ep3_A Zinc finger protein 484 22.1 32 0.0011 17.2 1.0 12 164-175 12-23 (46)
227 2eoj_A Zinc finger protein 268 22.1 30 0.001 17.1 0.9 12 164-175 12-23 (44)
228 2eow_A Zinc finger protein 347 22.0 32 0.0011 17.2 1.0 11 165-175 13-23 (46)
229 2yrj_A Zinc finger protein 473 21.9 32 0.0011 17.1 1.0 12 164-175 12-23 (46)
230 2en9_A Zinc finger protein 28 21.9 34 0.0012 17.1 1.1 12 164-175 12-23 (46)
231 2emx_A Zinc finger protein 268 21.9 33 0.0011 16.9 1.0 12 164-175 10-21 (44)
232 2xb1_A Pygopus homolog 2, B-ce 21.8 39 0.0013 21.6 1.5 53 73-134 5-62 (105)
233 2eoo_A ZFP-95, zinc finger pro 21.7 33 0.0011 17.2 1.0 12 164-175 12-23 (46)
234 2eps_A POZ-, at HOOK-, and zin 21.7 33 0.0011 18.1 1.0 11 165-175 42-52 (54)
235 2en3_A ZFP-95, zinc finger pro 21.6 33 0.0011 17.1 1.0 11 165-175 13-23 (46)
236 2lo3_A SAGA-associated factor 21.6 31 0.0011 18.4 0.8 12 71-82 17-28 (44)
237 2eoy_A Zinc finger protein 473 21.6 33 0.0011 17.2 1.0 11 165-175 13-23 (46)
238 2eop_A Zinc finger protein 268 21.5 35 0.0012 17.0 1.1 11 165-175 13-23 (46)
239 2em7_A Zinc finger protein 224 21.5 34 0.0012 17.1 1.0 12 164-175 12-23 (46)
240 2yth_A Zinc finger protein 224 21.5 34 0.0012 17.1 1.0 12 164-175 12-23 (46)
241 2em3_A Zinc finger protein 28 21.5 34 0.0011 17.1 1.0 12 164-175 12-23 (46)
242 2emj_A Zinc finger protein 28 21.4 34 0.0012 17.1 1.0 12 164-175 12-23 (46)
243 2eq2_A Zinc finger protein 347 21.4 31 0.0011 17.3 0.8 12 164-175 12-23 (46)
244 2emk_A Zinc finger protein 28 21.4 37 0.0013 17.0 1.2 12 164-175 12-23 (46)
245 2yto_A Zinc finger protein 484 21.4 34 0.0012 17.2 1.0 12 164-175 12-23 (46)
246 3ttc_A HYPF, transcriptional r 21.4 29 0.001 29.9 1.0 84 69-174 15-99 (657)
247 2eoh_A Zinc finger protein 28 21.4 33 0.0011 17.2 1.0 12 164-175 12-23 (46)
248 2i5o_A DNA polymerase ETA; zin 21.3 30 0.001 18.1 0.7 10 165-174 10-19 (39)
249 2ytp_A Zinc finger protein 484 21.2 34 0.0012 17.1 1.0 12 164-175 12-23 (46)
250 2em4_A Zinc finger protein 28 21.2 34 0.0012 17.1 1.0 12 164-175 12-23 (46)
251 2eov_A Zinc finger protein 484 21.1 37 0.0013 16.9 1.1 12 164-175 12-23 (46)
252 2ep1_A Zinc finger protein 484 21.1 33 0.0011 17.1 0.9 12 164-175 12-23 (46)
253 2eor_A Zinc finger protein 224 21.0 34 0.0012 17.0 0.9 12 164-175 12-23 (46)
254 2yrm_A B-cell lymphoma 6 prote 20.9 36 0.0012 16.8 1.0 11 165-175 11-21 (43)
255 2emf_A Zinc finger protein 484 20.9 36 0.0012 17.0 1.0 12 164-175 12-23 (46)
256 2eq1_A Zinc finger protein 347 20.9 34 0.0012 17.1 0.9 11 165-175 13-23 (46)
257 2kfq_A FP1; protein, de novo p 20.9 23 0.00079 16.2 0.2 10 165-174 3-12 (32)
258 2epw_A Zinc finger protein 268 20.8 35 0.0012 17.0 1.0 11 165-175 13-23 (46)
259 2el6_A Zinc finger protein 268 20.8 36 0.0012 17.0 1.0 12 164-175 12-23 (46)
260 2eox_A Zinc finger protein 473 20.8 32 0.0011 17.0 0.8 12 164-175 12-23 (44)
261 2ytn_A Zinc finger protein 347 20.7 38 0.0013 16.9 1.1 11 165-175 13-23 (46)
262 2ytq_A Zinc finger protein 268 20.7 40 0.0014 16.9 1.2 12 164-175 12-23 (46)
263 2eml_A Zinc finger protein 28 20.6 36 0.0012 17.0 1.0 11 165-175 13-23 (46)
264 2eom_A ZFP-95, zinc finger pro 20.6 36 0.0012 17.1 1.0 13 163-175 11-23 (46)
265 2ku3_A Bromodomain-containing 20.5 57 0.002 19.2 2.0 50 72-134 17-67 (71)
266 2emh_A Zinc finger protein 484 20.4 36 0.0012 17.0 0.9 12 164-175 12-23 (46)
267 2yu8_A Zinc finger protein 347 20.4 37 0.0013 17.0 1.0 12 164-175 12-23 (46)
268 2el4_A Zinc finger protein 268 20.3 37 0.0013 16.9 1.0 12 164-175 12-23 (46)
269 2yti_A Zinc finger protein 347 20.3 34 0.0011 17.1 0.8 12 164-175 12-23 (46)
270 2emp_A Zinc finger protein 347 20.3 38 0.0013 16.9 1.0 12 164-175 12-23 (46)
271 2eq0_A Zinc finger protein 347 20.3 36 0.0012 17.0 0.9 12 164-175 12-23 (46)
272 2elz_A Zinc finger protein 224 20.3 40 0.0014 16.9 1.1 11 165-175 13-23 (46)
273 2emy_A Zinc finger protein 268 20.2 37 0.0013 16.9 1.0 12 164-175 12-23 (46)
274 2ytj_A Zinc finger protein 484 20.1 38 0.0013 16.9 1.0 12 164-175 12-23 (46)
275 2em2_A Zinc finger protein 28 20.0 38 0.0013 17.0 1.0 12 164-175 12-23 (46)
276 2ely_A Zinc finger protein 224 20.0 38 0.0013 16.9 1.0 11 165-175 13-23 (46)
No 1
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.95 E-value=7.5e-28 Score=161.91 Aligned_cols=95 Identities=18% Similarity=0.461 Sum_probs=85.9
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccC-
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN- 150 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~- 150 (176)
.+|.+|+++|..++.++.+. ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ ++|..|+++|.++
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHYK----NRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS-PKCKGCFKAIVAGD 80 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEET----TEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC-CBCSSSCCBCCSSS
T ss_pred CcCcccCCcccCCceEEEEC----ccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC-CccccCCCccccCC
Confidence 48999999998544555665 88999999999999999988889999999999999999999 9999999999854
Q ss_pred ceEEeCCCccccCCeecccCC
Q psy15163 151 EYTLAENKTFHVKHFCCYECD 171 (176)
Q Consensus 151 ~~~~a~~~~~H~~CF~C~~C~ 171 (176)
.++.|+++.||++||+|..|+
T Consensus 81 ~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 81 QNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp CEEESSSCEEETTTCCCTTCC
T ss_pred eEEEeCCcchHHhCCCCCCCC
Confidence 467899999999999999996
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.94 E-value=4.2e-27 Score=164.33 Aligned_cols=99 Identities=23% Similarity=0.506 Sum_probs=90.0
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccC-
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN- 150 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~- 150 (176)
++|++|+++|..++.+ .+. ++.||++||+|..|+++|.+..|+.++|++||+.||.++|+ ++|..|+++|.++
T Consensus 4 ~~C~~C~~~I~~~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~-~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYT-QAE----NQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA-VVCQGCHNAIDPEV 77 (126)
T ss_dssp CBBTTTSSBCCSSCEE-EET----TEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC-CBCTTTCSBCCTTS
T ss_pred CCCccCCCEeCCceEE-eeC----CCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC-ccCcccCCcCCcCc
Confidence 4899999999976654 555 88999999999999999998899999999999999999999 9999999999864
Q ss_pred ceEEeCCCccc--cCCeecccCCcccCC
Q psy15163 151 EYTLAENKTFH--VKHFCCYECDKIITQ 176 (176)
Q Consensus 151 ~~~~a~~~~~H--~~CF~C~~C~~~l~~ 176 (176)
.++.|+++.|| ++||+|..|+++|.+
T Consensus 78 ~~~~a~~~~~H~~~~CF~C~~C~~~l~~ 105 (126)
T 2xqn_T 78 QRVTYNNFSWHASTECFLCSCCSKCLIG 105 (126)
T ss_dssp CEEEETTEEEESSTTTSBCTTTCCBCTT
T ss_pred eEEECCCCEeeCCCCCcCcCCCCCccCC
Confidence 46789999999 999999999999863
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.93 E-value=1.9e-26 Score=162.02 Aligned_cols=98 Identities=27% Similarity=0.582 Sum_probs=87.6
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC--CCceeeeCCcccCHhHHhhCCCcc--ccccccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIP--RCHACDELI 147 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~y~~~~~~~--~C~~C~~~I 147 (176)
.+|+.|+++|... .++.++ ++.||++||+|..|+.+|. +..|+.++|++||+.||.++|+ + +|..|+++|
T Consensus 3 ~~C~~C~~~I~~~-~~~~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I 76 (131)
T 2xjy_A 3 LTCGGCQQNIGDR-YFLKAI----DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-QDGLCASCDKRI 76 (131)
T ss_dssp CBBTTTCCBCCSS-EEEEET----TEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-CCEECTTTCCEE
T ss_pred ccCcCCCCEeCCc-EEEEEC----CCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-CccChhhcCCcc
Confidence 4899999999954 455665 8899999999999999996 3689999999999999999999 8 999999999
Q ss_pred ccCc-eEEeCCCccccCCeecccCCcccC
Q psy15163 148 FVNE-YTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 148 ~~~~-~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
.+.+ ++.|+++.||++||+|..|+++|.
T Consensus 77 ~~~e~~~~a~~~~~H~~CF~C~~C~~~L~ 105 (131)
T 2xjy_A 77 RAYEMTMRVKDKVYHLECFKCAACQKHFC 105 (131)
T ss_dssp CTTSEEEEETTEEEEGGGCBCTTTCCBCC
T ss_pred CccceeEeeCCceECccCcccCCCCCCCC
Confidence 8644 678999999999999999999983
No 4
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.92 E-value=2.9e-25 Score=164.23 Aligned_cols=100 Identities=24% Similarity=0.572 Sum_probs=88.2
Q ss_pred CCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccc
Q psy15163 69 RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIF 148 (176)
Q Consensus 69 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~ 148 (176)
....+|..|+++|... .++.+. ++.||++||+|..|+++|.+.. |.++|++||+.||.++|+ ++|..|+++|.
T Consensus 58 ~~~~~C~~C~~~I~~~-~~~~a~----~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~-~kC~~C~~~I~ 130 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDR-FILKAL----DRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG-TKCAACQLGIP 130 (182)
T ss_dssp CSCCBCBTSSSBCCCS-EEEEET----TEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTS-CCCTTTCCCCC
T ss_pred CCCCcCccCCCCccCc-eeEEec----CCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccc-cccccCCCccC
Confidence 3456999999999954 455665 8899999999999999998865 579999999999999999 99999999998
Q ss_pred cCc-eEEeCCCccccCCeecccCCcccC
Q psy15163 149 VNE-YTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 149 ~~~-~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
+.+ ++.|+++.||++||+|..|+++|.
T Consensus 131 ~~~~v~~a~~~~~H~~CF~C~~C~~~L~ 158 (182)
T 2jtn_A 131 PTQVVRRAQDFVYHLHCFACVVCKRQLA 158 (182)
T ss_dssp SSCCCCEETTEECCTTTCCCTTTCCCCC
T ss_pred CCceEEecCCCCEEeCCCcCCCCCCCCC
Confidence 765 457999999999999999999985
No 5
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.92 E-value=1.3e-25 Score=167.40 Aligned_cols=99 Identities=25% Similarity=0.610 Sum_probs=89.4
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccc-----------
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPR----------- 139 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~----------- 139 (176)
..+|..|+++|..++.+ .++ ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ ++
T Consensus 7 ~~~C~~C~~~I~~~~~v-~a~----g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-~~c~~c~~~~g~~ 80 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEV-QCE----GSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG-PKGKGKGMGAGTL 80 (192)
T ss_dssp CEECTTTCCEECSSCCE-EET----TEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS-CCCCCCCCCCCCC
T ss_pred CCcCccCCCeecceeEE-EeC----CceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC-ccccccccccccE
Confidence 35899999999877766 454 88999999999999999998889999999999999999987 65
Q ss_pred -------------------------------------ccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 140 -------------------------------------CHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 140 -------------------------------------C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
|..|+++|.+++++.++++.||++||+|..|+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~ 153 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLE 153 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCC
T ss_pred ecCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCC
Confidence 789999998777778999999999999999999986
No 6
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.92 E-value=1.5e-25 Score=163.86 Aligned_cols=98 Identities=24% Similarity=0.564 Sum_probs=86.7
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccC
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN 150 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~ 150 (176)
...|..|+++|...+ ++.++ ++.||++||+|..|+.+|.+.. +.++|++||+.||.++|+ ++|..|+++|.+.
T Consensus 6 ~~~C~~C~~~I~~~~-~~~a~----~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~-~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 6 IPMCAGCDQHILDRF-ILKAL----DRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG-TKCAACQLGIPPT 78 (169)
T ss_dssp -CBBSSSSSBCCSSS-CEECS----SCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHS-CBCTTTCCBCCTT
T ss_pred CCccccCCCccCCcE-EEEEC----CcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccc-ccccccccccCCC
Confidence 358999999999544 44565 8899999999999999998865 589999999999999999 9999999999876
Q ss_pred ce-EEeCCCccccCCeecccCCcccC
Q psy15163 151 EY-TLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 151 ~~-~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
++ +.|+++.||++||+|..|+++|.
T Consensus 79 ~~v~~a~~~~~H~~CF~C~~C~~~L~ 104 (169)
T 2rgt_A 79 QVVRRAQDFVYHLHCFACVVCKRQLA 104 (169)
T ss_dssp SEEEEETTEEEEGGGCBCTTTCCBCC
T ss_pred cEEEEcCCceEeeCCCcCCCCCCCCC
Confidence 54 57999999999999999999985
No 7
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.91 E-value=2.2e-25 Score=165.66 Aligned_cols=98 Identities=29% Similarity=0.724 Sum_probs=87.8
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCC--CceeeeCCcccCHhHHhhCCCcc--ccccccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVD--LMYFHYKGNVYCLRDYATMLDIP--RCHACDELI 147 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~~y~~~~~~~--~C~~C~~~I 147 (176)
..|..|+++|.. ..++.++ ++.||++||+|..|+.+|.. ..|+.+++++||+.||.++|+ + +|..|+++|
T Consensus 6 ~~C~~C~~~I~~-~~~~~a~----~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~-~~~~C~~C~~~I 79 (188)
T 1rut_X 6 KRCAGCGGKIAD-RFLLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGACSACGQSI 79 (188)
T ss_dssp CBBTTTCCBCCC-SEEEEET----TEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS-CCEECTTTCCEE
T ss_pred CcCccCCCEeCC-ceeEEec----CcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc-cCCccccCCCcc
Confidence 489999999994 4455665 88999999999999999974 689999999999999999999 8 799999999
Q ss_pred ccCc-eEEeCCCccccCCeecccCCcccC
Q psy15163 148 FVNE-YTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 148 ~~~~-~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
.+.+ ++.|+++.||++||+|..|+++|.
T Consensus 80 ~~~e~~i~a~~~~~H~~CF~C~~C~~~L~ 108 (188)
T 1rut_X 80 PASELVMRAQGNVYHLKCFTCSTCRNRLV 108 (188)
T ss_dssp CTTSEEEEETTEEECGGGCBCTTTCCBCC
T ss_pred ccCcEEEEcCCCEEeCCCCeECCCCCCCC
Confidence 8654 567999999999999999999984
No 8
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=8.9e-19 Score=113.03 Aligned_cols=80 Identities=26% Similarity=0.628 Sum_probs=71.8
Q ss_pred CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh
Q psy15163 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132 (176)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~ 132 (176)
++.++|.+|+.....+ +|.+|+++|.+++.++.+. ++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus 1 ~~~~yC~~cy~~~~~~----~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 72 (82)
T 1x63_A 1 GSSGSSGKCTTREDSP----KCKGCFKAIVAGDQNVEYK----GTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHE 72 (82)
T ss_dssp CCSCCCCCCCSCCCSC----BCSSSCCBCCSSSCEEECS----SCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHH
T ss_pred CCCcCchhHHccccCC----cCccCCcccccCceEEEEC----ccccccccCchhhCCCccCCCccEeeCCEEECHHHHH
Confidence 4568999999987665 9999999999877777776 8899999999999999998888999999999999999
Q ss_pred hCCCccccc
Q psy15163 133 TMLDIPRCH 141 (176)
Q Consensus 133 ~~~~~~~C~ 141 (176)
++|+ ++|.
T Consensus 73 ~~f~-~~~~ 80 (82)
T 1x63_A 73 TKFA-SGPS 80 (82)
T ss_dssp HHTS-CCCS
T ss_pred HHhC-CCCC
Confidence 9999 8874
No 9
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-19 Score=114.90 Aligned_cols=81 Identities=22% Similarity=0.516 Sum_probs=72.0
Q ss_pred CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh
Q psy15163 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132 (176)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~ 132 (176)
++.+||..|+..+..+ +|..|+++|.+++.++.+. ++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus 1 ~g~~yC~~~y~~~~~~----~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~ 72 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFAN----TCAECQQLIGHDSRELFYE----DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYC 72 (82)
T ss_dssp CCCCCCCCCCCCCCSC----BCTTTCCBCCSSCCBCCCS----SCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSS
T ss_pred CCceechhHhCcccCC----cCccCCCccccCcEEEEeC----CccccccCCeecCCCCccCCCccEeeCCEEECHHHHh
Confidence 3568999999988776 9999999999656666765 8899999999999999999889999999999999999
Q ss_pred hCCCcccccc
Q psy15163 133 TMLDIPRCHA 142 (176)
Q Consensus 133 ~~~~~~~C~~ 142 (176)
++|+ ++|+.
T Consensus 73 ~~~~-~~C~~ 81 (82)
T 2ehe_A 73 SAFS-SGPSS 81 (82)
T ss_dssp CCGG-GSSCC
T ss_pred hhcC-CCCCC
Confidence 9999 99863
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.3e-18 Score=111.80 Aligned_cols=79 Identities=23% Similarity=0.533 Sum_probs=69.8
Q ss_pred CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh
Q psy15163 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132 (176)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~ 132 (176)
++.++|..|+..+..+ +|++|+++|.. +.+ .+. ++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus 1 gg~~yC~~~y~~~~~~----~C~~C~~~I~~-~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~ 70 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSP----KCGGCNRPVLE-NYL-SAM----DTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYH 70 (80)
T ss_dssp CCCCCCCCCCCCCCSC----BCTTTCCBCCS-SCE-EET----TEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHH
T ss_pred CCCccchhHHhhhcCC----ccccCCCeecc-eeE-EEC----CCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHH
Confidence 4568999999988765 99999999994 555 554 8899999999999999998888999999999999999
Q ss_pred hCCCcccccc
Q psy15163 133 TMLDIPRCHA 142 (176)
Q Consensus 133 ~~~~~~~C~~ 142 (176)
++|+ ++|+.
T Consensus 71 ~~f~-~~C~~ 79 (80)
T 1x3h_A 71 HRRG-SGPSS 79 (80)
T ss_dssp HHHS-SSCCC
T ss_pred HHcC-CCCCC
Confidence 9999 99964
No 11
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=3e-19 Score=123.78 Aligned_cols=79 Identities=22% Similarity=0.496 Sum_probs=68.2
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC--CCceeeeCCcccCHhHHhhCCCcc--ccccccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIP--RCHACDELI 147 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~y~~~~~~~--~C~~C~~~I 147 (176)
.+|++|+++|...+.+ .+. ++.||++||+|..|+.+|. +..|+.+++++||+.||.++|+ + +|+.|+++|
T Consensus 6 ~~C~~C~~~I~~~~~~-~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I 79 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLL-YAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMG 79 (122)
T ss_dssp CCBSSSSSCCCSSCCE-EET----TEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSCCS
T ss_pred CCCcccCCEeCCcEEE-EEC----CceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCCCc
Confidence 4899999999966544 555 8899999999999999997 3579999999999999999999 9 999999999
Q ss_pred ccCceEEeCC
Q psy15163 148 FVNEYTLAEN 157 (176)
Q Consensus 148 ~~~~~~~a~~ 157 (176)
.+++++ +++
T Consensus 80 ~~~~~~-~~g 88 (122)
T 1m3v_A 80 SGGDVM-VVG 88 (122)
T ss_dssp CCEESS-SSS
T ss_pred CchheE-EcC
Confidence 876655 444
No 12
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=2.4e-18 Score=110.48 Aligned_cols=79 Identities=20% Similarity=0.576 Sum_probs=69.5
Q ss_pred CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh
Q psy15163 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132 (176)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~ 132 (176)
++.++|.+|+..+..+ +|..|+++|.. +.+ .+. ++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus 1 gg~~yC~~cy~~~~~~----~C~~C~~~I~~-~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 70 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAP----RCARCSKTLTQ-GGV-TYR----DQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFG 70 (80)
T ss_dssp CCCCSCCCCCCCCSSC----CCTTTCCCCCS-CCE-ESS----SSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHH
T ss_pred CCcEEcHHHHccccCC----cCCCCCCEecC-cEE-EEC----CchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHH
Confidence 4568999999987765 99999999984 544 555 8899999999999999998888999999999999999
Q ss_pred hCCCcccccc
Q psy15163 133 TMLDIPRCHA 142 (176)
Q Consensus 133 ~~~~~~~C~~ 142 (176)
++|+ ++|+.
T Consensus 71 ~~f~-~~c~s 79 (80)
T 2cuq_A 71 ELFA-SGPSS 79 (80)
T ss_dssp HHTT-CSTTC
T ss_pred HHcC-CCCCC
Confidence 9999 99863
No 13
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.7e-18 Score=109.23 Aligned_cols=69 Identities=23% Similarity=0.486 Sum_probs=62.9
Q ss_pred ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCH-hHHhhCCCccccccccccc
Q psy15163 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL-RDYATMLDIPRCHACDELI 147 (176)
Q Consensus 73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~~y~~~~~~~~C~~C~~~I 147 (176)
+|.+|+++|..++.+ .+. ++.||++||+|..|+++|.+..|+..++++||+ .||.++|+ ++|..|++.+
T Consensus 2 ~C~~C~~~I~~~~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-~~C~~C~~~~ 71 (76)
T 1iml_A 2 KCPKCDKEVYFAERV-TSL----GKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-PKGFGRGGAE 71 (76)
T ss_dssp BCTTTSSBCCGGGEE-EET----TEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-CCCSSCCCSS
T ss_pred cCCCCCCEEECceEE-EEC----CccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC-ccCCCcCCce
Confidence 799999999977775 454 889999999999999999888899999999999 69999999 9999999766
No 14
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.72 E-value=2.4e-18 Score=110.79 Aligned_cols=71 Identities=23% Similarity=0.477 Sum_probs=55.2
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccccccc
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI 147 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I 147 (176)
..+|..|+++|..++.+ .+. ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ ++|.+|++..
T Consensus 7 ~~~C~~C~~~I~~~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~gcg~g~ 77 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV-QCD----GRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG-PKGYGYGQGA 77 (81)
T ss_dssp -CBCSSSCCBCSSTTEE-EET----TEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-----------
T ss_pred CCcCcCcCccccCceeE-EeC----CcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC-CcccccCCcc
Confidence 35899999999877765 554 88999999999999999988889999999999999999999 9999999765
No 15
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.1e-17 Score=107.57 Aligned_cols=78 Identities=19% Similarity=0.459 Sum_probs=66.3
Q ss_pred CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeee-CCcccCHhHH
Q psy15163 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY-KGNVYCLRDY 131 (176)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~g~~yC~~~y 131 (176)
++.++|.+|+. ... .+|++|+++|. ++ ++.+. ++.||++||+|..|+++|.+..|+.. ++++||+.||
T Consensus 2 ~g~~yC~~~y~-~~~----~~C~~C~~~I~-~~-~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy 70 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATL----EKCATCSQPIL-DR-ILRAM----GKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDF 70 (81)
T ss_dssp CCCCCCCCCCC-SSC----CBCTTTCCBCC-SC-CEEET----TEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHH
T ss_pred cCCEECHHHhh-cCC----CccccCCCeec-ce-eEEEC----CccccHHhcCcccCCCccCCCeeEECCCCEEECHHHH
Confidence 35689999998 443 49999999998 44 45665 88999999999999999998778776 7899999999
Q ss_pred hhCCCcccccc
Q psy15163 132 ATMLDIPRCHA 142 (176)
Q Consensus 132 ~~~~~~~~C~~ 142 (176)
.++|+ ++|+.
T Consensus 71 ~~~f~-~~C~~ 80 (81)
T 2dlo_A 71 HRKFA-SGPSS 80 (81)
T ss_dssp HHHTT-SSSCC
T ss_pred HHHhc-CcCCC
Confidence 99999 99964
No 16
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.4e-17 Score=106.02 Aligned_cols=66 Identities=26% Similarity=0.713 Sum_probs=58.7
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccc
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 141 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~ 141 (176)
..+|.+|+++|.+.+.++.+. ++.||++||+|..|+++|.+..|+..+|++||+.||.++|+ ++|+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~~C~ 76 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSN----GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA-PCWI 76 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEET----TEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCC-CC--
T ss_pred CCCchhcCCccCCCceEEEeC----ccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhh-cccC
Confidence 359999999998767777776 88999999999999999988889999999999999999999 9986
No 17
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=103.86 Aligned_cols=73 Identities=25% Similarity=0.566 Sum_probs=63.6
Q ss_pred CCCcccCCCCCCccCCCCCcccccccccccC---CCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHh
Q psy15163 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRS---GDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129 (176)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~---~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~ 129 (176)
++.++|..|+..+.++ +|++|+++|.+ ...++.+. ++.||++||+|..|+++|.+..|+..++++||+.
T Consensus 1 g~~~yC~~cy~~~~~~----~C~~C~~~I~~~g~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~ 72 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAK----KCAGCKNPITGFGKGSSVVAYE----GQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPD 72 (77)
T ss_dssp CCSSCCTTCCCSCCCC----CCSSSCCCCCCCSSCCCEEEET----TEEEETTTCBCSSSCCBCTTSCCCEETTEECCHH
T ss_pred CCCeEchhHhchhhCc----cCcccCCcccCCCCCceeEEEC----cceeCcccCEehhcCCCCCCCccEeECCEEEChH
Confidence 4678999999988765 99999999995 33455665 8899999999999999999888999999999999
Q ss_pred HHhh
Q psy15163 130 DYAT 133 (176)
Q Consensus 130 ~y~~ 133 (176)
||.+
T Consensus 73 cy~~ 76 (77)
T 2egq_A 73 CAKK 76 (77)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9975
No 18
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.6e-17 Score=105.60 Aligned_cols=68 Identities=19% Similarity=0.509 Sum_probs=60.5
Q ss_pred cccccccccccC--CCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccc
Q psy15163 72 KTCKQCGQEVRS--GDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACD 144 (176)
Q Consensus 72 ~~C~~C~~~i~~--~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~ 144 (176)
.+|..|+++|.. ...++.++ ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.++
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~-~~C~~~s 75 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQ----DSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT-DISGPSS 75 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEET----TEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC-CSSSSSC
T ss_pred CCCccCCCcccCCCCceeEEEC----CcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC-CcCCCCC
Confidence 389999999994 33445665 88999999999999999998889999999999999999999 9999876
No 19
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3e-17 Score=103.21 Aligned_cols=66 Identities=17% Similarity=0.526 Sum_probs=60.2
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 142 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~ 142 (176)
.+|..|+++|.+.+.++.+. ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYK----GSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA-SGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEET----TEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS-SCCCC
T ss_pred CCCccCCCcccCCceEEEEC----cCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhC-CCCCC
Confidence 38999999999776666776 88999999999999999988889999999999999999999 99963
No 20
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=7.1e-17 Score=105.91 Aligned_cols=65 Identities=25% Similarity=0.602 Sum_probs=58.0
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 142 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~ 142 (176)
..+|..|+++|. ++.+ .++ ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.
T Consensus 25 ~~~C~~C~~~I~-~~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~-~~c~s 89 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL-VAL----GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA-SGPSS 89 (90)
T ss_dssp CCBBSSSCCBCC-SCEE-EET----TEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS-CCCCC
T ss_pred CCCCccCCCEec-ceEE-EEC----CccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC-CCCCC
Confidence 359999999997 6655 454 88999999999999999998889999999999999999999 99963
No 21
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.4e-17 Score=104.62 Aligned_cols=65 Identities=28% Similarity=0.678 Sum_probs=57.9
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 142 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~ 142 (176)
..+|..|+++|..++.+. ++ ++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+ ++|++
T Consensus 15 ~~~C~~C~~~I~~~~~v~-a~----~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg-~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL-AL----DKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFG-SGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE-ET----TEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTT-CCSTT
T ss_pred CCCCcCcCCeeCCCeEEE-EC----CcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcC-CCCCC
Confidence 458999999998777664 44 88999999999999999986 69999999999999999999 99974
No 22
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=3.9e-17 Score=102.64 Aligned_cols=66 Identities=27% Similarity=0.636 Sum_probs=59.6
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 142 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~ 142 (176)
.+|..|+++|.+++.++.+. ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~~ 71 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYG----GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA-SGPSS 71 (72)
T ss_dssp CBCSSSCCBCCSSSCEECST----TCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS-CCCCC
T ss_pred CCCccCCCccccCccEEEEC----ccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHcc-CcCCC
Confidence 48999999999765666765 88999999999999999998889999999999999999999 99963
No 23
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.9e-17 Score=102.98 Aligned_cols=65 Identities=22% Similarity=0.459 Sum_probs=58.9
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCH-hHHhhCCCcccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL-RDYATMLDIPRCHA 142 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~~y~~~~~~~~C~~ 142 (176)
.+|..|+++|..++.+. ++ ++.||++||+|..|+++|.+..|+.+++++||+ .||.++|+ ++|.+
T Consensus 10 ~~C~~C~~~I~~~~~v~-a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-~kc~g 75 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS-SL----GKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG-SGPSS 75 (76)
T ss_dssp CBCTTTCCBCCTTTEEE-ET----TEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC-SSCSC
T ss_pred CCCcCCCCEeECCeEEE-EC----CeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcc-cccCC
Confidence 48999999999777764 54 889999999999999999988899999999999 79999999 99864
No 24
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.1e-16 Score=100.73 Aligned_cols=64 Identities=22% Similarity=0.545 Sum_probs=57.0
Q ss_pred cccccccccccC--CCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccc
Q psy15163 72 KTCKQCGQEVRS--GDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRC 140 (176)
Q Consensus 72 ~~C~~C~~~i~~--~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C 140 (176)
.+|..|+++|.. .+.++.++ ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ |++
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~-p~~ 71 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFE----ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISG-PSS 71 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECS----SCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCC-SSC
T ss_pred CCCcCCCccccCCCCcceEEEC----CcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccC-CCC
Confidence 489999999995 34555665 88999999999999999998889999999999999999999 775
No 25
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=6.5e-17 Score=100.88 Aligned_cols=64 Identities=22% Similarity=0.596 Sum_probs=57.5
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 142 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~ 142 (176)
.+|..|+++|. ++.+ .+. ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|++
T Consensus 6 ~~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~g 69 (69)
T 2cur_A 6 SGCVKCNKAIT-SGGI-TYQ----DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS-GPSSG 69 (69)
T ss_dssp CCCSSSCCCCC-TTCE-EET----TEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT-CSCCC
T ss_pred CCCcccCCEeC-cceE-EEC----ccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc-CCCCC
Confidence 48999999998 4555 554 88999999999999999998889999999999999999999 99974
No 26
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=7.2e-17 Score=103.77 Aligned_cols=78 Identities=18% Similarity=0.406 Sum_probs=66.0
Q ss_pred CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCcee-eeCCcccCHhH
Q psy15163 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYF-HYKGNVYCLRD 130 (176)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~g~~yC~~~ 130 (176)
+++.||..|+..+.++ +|..|+++|. ++.+ .+. ++.||++||+|..|+++|. +..|+ ..++++||+.|
T Consensus 1 g~~~yC~~~y~~~~~~----~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c 70 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGE----FCHGCSLLMT-GPFM-VAG----EFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKC 70 (81)
T ss_dssp CCCCCCCCCSSCCSSC----BCTTTCCBCC-SCCB-CCT----TCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHH
T ss_pred CCCccchhHHhhhcCC----cCccCCCCcC-ceEE-EEC----CceeccccCCccCCCCccCCCCcEEEeeCCEEECHHH
Confidence 3568999999988776 9999999999 5554 554 8899999999999999996 45677 48999999999
Q ss_pred HhhCCCccccc
Q psy15163 131 YATMLDIPRCH 141 (176)
Q Consensus 131 y~~~~~~~~C~ 141 (176)
|.++|+ +.|+
T Consensus 71 ~~~~~~-~~~s 80 (81)
T 1x6a_A 71 HNEVVS-GPSS 80 (81)
T ss_dssp HHHHHC-TTSC
T ss_pred HHHHhc-CCCC
Confidence 999998 7765
No 27
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.6e-16 Score=108.67 Aligned_cols=67 Identities=24% Similarity=0.491 Sum_probs=59.3
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCC--CceeeeCCcccCHhHHhhCCCcccccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVD--LMYFHYKGNVYCLRDYATMLDIPRCHACD 144 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~~y~~~~~~~~C~~C~ 144 (176)
.+|++|+++|... .++.++ ++.||++||+|..|+++|.. ..|+.+++++||+.||.++|+ ++|..|.
T Consensus 4 ~~C~~C~~~I~~~-~~~~a~----~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~-~~c~~c~ 72 (114)
T 1j2o_A 4 LTCGGCQQNIGDR-YFLKAI----DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG-SGGHMGS 72 (114)
T ss_dssp BCBSSSCSCBCSS-EEEECS----SSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT-SCCSSCB
T ss_pred CCCcCCCCeeCCc-EEEEEC----chhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC-cccCcCC
Confidence 4899999999954 455665 88999999999999999974 589999999999999999999 9988876
No 28
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.2e-16 Score=99.85 Aligned_cols=64 Identities=22% Similarity=0.553 Sum_probs=57.3
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 142 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~ 142 (176)
.+|..|+++|. ++.+ .+. ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.
T Consensus 6 ~~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPIT-TGGV-TYR----EQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA-SGPSS 69 (70)
T ss_dssp CBCSSSCCBCC-SSEE-ESS----SSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTC-CCCTT
T ss_pred CCCcccCCeec-cceE-EEC----ccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhc-cccCC
Confidence 48999999998 4554 554 88999999999999999998899999999999999999999 99963
No 29
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.64 E-value=3.3e-17 Score=121.84 Aligned_cols=71 Identities=25% Similarity=0.607 Sum_probs=65.0
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccccccc
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI 147 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I 147 (176)
..+|..|+++|.+++.+. +. ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|.+|+++|
T Consensus 115 ~~~C~~C~~~I~~~~~v~-a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-~kc~~C~~~~ 185 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI-GA----GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-PKGFGFGQGA 185 (192)
T ss_dssp CEECTTTSCEECSSSCEE-ET----TEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC-CCCCCCCCCC
T ss_pred CCcCCCCCCEecCcEEEe-cC----CCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC-CcCCCCCCcc
Confidence 357999999999777775 54 88999999999999999988889999999999999999999 9999999997
No 30
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.6e-16 Score=103.44 Aligned_cols=67 Identities=24% Similarity=0.548 Sum_probs=59.9
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccc
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC 143 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C 143 (176)
...|..|+++|...+.+ .++ ++.||++||+|..|+++|....|+..++++||+.||.++|+ ++|..+
T Consensus 15 ~~~C~~C~~~I~~~~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~kc~~~ 81 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL-LAN----QQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK-SKGNYD 81 (91)
T ss_dssp SCBCTTTCCBCCTTSEE-ECS----SSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC-CCSCCC
T ss_pred CCcCccCCCccCCceeE-EEC----CCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC-CCcCcc
Confidence 35899999999977766 554 88999999999999999988889999999999999999999 999843
No 31
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2e-16 Score=99.41 Aligned_cols=66 Identities=27% Similarity=0.609 Sum_probs=57.5
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC 143 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C 143 (176)
.+|.+|+++|...+.++.+. ++.||++||+|..|+++|.+..|+.+++++||+.||.++|. +|..+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~--~~~~~ 71 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVAL----DRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE--SGPSS 71 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECS----SSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH--TCSSC
T ss_pred CCCccCCCccCCCceEEEEC----CCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc--cCCCC
Confidence 48999999999766566666 88999999999999999988889999999999999998875 56544
No 32
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.61 E-value=2.3e-16 Score=97.49 Aligned_cols=61 Identities=23% Similarity=0.630 Sum_probs=54.7
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPR 139 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~ 139 (176)
.+|.+|+++|. ++.+ .+. ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++
T Consensus 6 ~~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~k 66 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV-NAM----GKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG-DV 66 (66)
T ss_dssp CEETTTTEECC-SCEE-CCT----TSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCS-CC
T ss_pred CCCcccCCEec-ceEE-EEC----ccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhC-CC
Confidence 48999999999 6654 554 88999999999999999998899999999999999999998 64
No 33
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.60 E-value=6.3e-16 Score=96.90 Aligned_cols=62 Identities=26% Similarity=0.747 Sum_probs=56.3
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD 136 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~ 136 (176)
..+|.+|+++|...+.++.+. ++.||++||+|..|+++|.+..|+..+|++||+.||.++|+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSN----GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEET----TEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CccchhcCccccCCceEEEeC----cCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 349999999999888877776 88999999999999999988789999999999999998875
No 34
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.6e-16 Score=100.75 Aligned_cols=63 Identities=27% Similarity=0.639 Sum_probs=56.3
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 141 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~ 141 (176)
.+|..|++.|.. +. +.++ ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ +++.
T Consensus 26 ~~C~~C~~~I~~-~~-~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-p~~~ 88 (89)
T 1x64_A 26 PLCDKCGSGIVG-AV-VKAR----DKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTS-GPSS 88 (89)
T ss_dssp CBCTTTCCBCCS-CC-EESS----SCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS-SCCC
T ss_pred CCcccCCCEecc-cE-EEEC----CceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC-CCCC
Confidence 489999999994 54 4555 88999999999999999988889999999999999999999 8875
No 35
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4e-16 Score=100.50 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=49.2
Q ss_pred CCcccCHhHHhhCCCcccccccccccc-cCceEEeCCCccccCCeecccCCcccCC
Q psy15163 122 KGNVYCLRDYATMLDIPRCHACDELIF-VNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~-~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
+|++||+.||.++|+ ++|..|+++|. ++.++.|+++.||++||+|..|+++|.+
T Consensus 1 ~g~~yC~~~y~~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 55 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA-NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLAD 55 (82)
T ss_dssp CCCCCCCCCCCCCCS-CBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSS
T ss_pred CCceechhHhCcccC-CcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCC
Confidence 588999999999999 99999999998 3567779999999999999999999864
No 36
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.6e-16 Score=97.96 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=49.0
Q ss_pred CCcccCHhHHhhCCCccccccccccccc----CceEEeCCCccccCCeecccCCcccCC
Q psy15163 122 KGNVYCLRDYATMLDIPRCHACDELIFV----NEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~----~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++++||+.||.++|+ ++|..|+++|.+ .+++.|+++.||++||+|..|+++|.+
T Consensus 1 g~~~yC~~cy~~~~~-~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 58 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA-KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLAN 58 (77)
T ss_dssp CCSSCCTTCCCSCCC-CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTT
T ss_pred CCCeEchhHhchhhC-ccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCC
Confidence 368999999999999 999999999984 367889999999999999999999863
No 37
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=3.9e-16 Score=99.90 Aligned_cols=63 Identities=22% Similarity=0.550 Sum_probs=55.8
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 141 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~ 141 (176)
.+|..|+++|.. +. +.++ ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ |++.
T Consensus 16 ~~C~~C~~~I~~-~~-~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-p~g~ 78 (79)
T 1x62_A 16 PMCDKCGTGIVG-VF-VKLR----DRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS-GPSS 78 (79)
T ss_dssp CCCSSSCCCCCS-SC-EECS----SCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHS-SCCC
T ss_pred CccccCCCCccC-cE-EEEC----cceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhC-CCCC
Confidence 489999999994 54 4555 88999999999999999988789999999999999999999 8764
No 38
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.7e-15 Score=96.00 Aligned_cols=64 Identities=22% Similarity=0.386 Sum_probs=54.7
Q ss_pred CCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccc
Q psy15163 70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 141 (176)
Q Consensus 70 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~ 141 (176)
...+|..|+++|. ++.+ .+. ++.||++||+|..|+++|.+. ++.+++++||+.||.++|+ |++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v-~a~----~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~-p~~s 77 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL-IFK----NDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGV-SGPS 77 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC-CCS----SSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSC-CSSC
T ss_pred CCCCCccCCCEec-ceEE-EEC----cceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCC-CCCC
Confidence 3459999999999 5555 454 889999999999999999876 4699999999999999999 7654
No 39
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=2e-15 Score=94.26 Aligned_cols=62 Identities=27% Similarity=0.627 Sum_probs=54.6
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRC 140 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C 140 (176)
.+|..|+++|. ++.+ .+. ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ ++.
T Consensus 6 ~~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~-~~~ 67 (70)
T 2d8x_A 6 SGCHQCGEFII-GRVI-KAM----NNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA-SGP 67 (70)
T ss_dssp SBCSSSCCBCC-SCCE-EET----TEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC-CCS
T ss_pred CcCccCCCEec-ceEE-EEC----cccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC-CCC
Confidence 48999999998 5554 554 88999999999999999998889999999999999999988 554
No 40
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.56 E-value=8.5e-16 Score=106.41 Aligned_cols=74 Identities=16% Similarity=0.416 Sum_probs=65.3
Q ss_pred ccccccccccCCCeEEEEeccCCCcccCccCcccccCcccc-CCCceeeeCCcccCHhHHhhCCCcccccccccccccCc
Q psy15163 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELL-VDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNE 151 (176)
Q Consensus 73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~ 151 (176)
+|..|++.|...+.++.+. ++.||.+||+|..|+++| .+..|+..++++||+.||.++|+ ++|..++..+....
T Consensus 10 ~C~~C~~~I~~~e~~~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~-~~~~~~~~~~~~~~ 84 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVK----DKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK-INGGSGGSGGSGGD 84 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCS----SCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH-HHTCCCCCCSCCSC
T ss_pred cccCCCCeecCCceEEEEC----CcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc-cccCCCCCCCccCC
Confidence 7999999999767776776 889999999999999999 55679999999999999999999 99999988875443
No 41
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=1.8e-15 Score=96.87 Aligned_cols=53 Identities=21% Similarity=0.542 Sum_probs=48.6
Q ss_pred CCcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 122 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
+|++||+.||.++++ ++|..|+++|.+ +++.|+++.||++||+|..|+++|.+
T Consensus 1 gg~~yC~~~y~~~~~-~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFS-PKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFST 53 (80)
T ss_dssp CCCCCCCCCCCCCCS-CBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCS
T ss_pred CCCccchhHHhhhcC-CccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCC
Confidence 478999999999999 999999999976 56789999999999999999999863
No 42
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=1.7e-15 Score=97.25 Aligned_cols=51 Identities=25% Similarity=0.541 Sum_probs=47.4
Q ss_pred CcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 123 g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
+.+||+.||.++|+ ++|..|+++|. +.++.|+++.||++||+|..|+++|.
T Consensus 2 ~~~yC~~~y~~~~~-~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~ 52 (81)
T 1x6a_A 2 SSGSSGKDYWGKFG-EFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIE 52 (81)
T ss_dssp CCCCCCCCSSCCSS-CBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCC
T ss_pred CCccchhHHhhhcC-CcCccCCCCcC-ceEEEECCceeccccCCccCCCCccC
Confidence 67999999999999 99999999997 56777999999999999999999985
No 43
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=2.1e-15 Score=96.62 Aligned_cols=53 Identities=15% Similarity=0.348 Sum_probs=48.6
Q ss_pred CCcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 122 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
+|++||+.||.++++ ++|..|+++|.+ +++.|+++.||++||+|..|+++|.+
T Consensus 1 gg~~yC~~cy~~~~~-~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (80)
T 2cuq_A 1 GSSGSSGPCYENKFA-PRCARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAG 53 (80)
T ss_dssp CCCCSCCCCCCCCSS-CCCTTTCCCCCS-CCEESSSSEECTTTCBCSSSCCBCTT
T ss_pred CCcEEcHHHHccccC-CcCCCCCCEecC-cEEEECCchhhhhhCCcccCCCcCCC
Confidence 478999999999999 999999999976 47789999999999999999999863
No 44
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=1.8e-15 Score=97.54 Aligned_cols=61 Identities=26% Similarity=0.562 Sum_probs=53.9
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCcee--eeCCcccCHhHHhhCCC
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF--HYKGNVYCLRDYATMLD 136 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~g~~yC~~~y~~~~~ 136 (176)
..+|.+|+++|+..+.+. ++ ++.||++||+|..|+++|....|+ ..++++||+.||.++|+
T Consensus 15 ~~~C~~C~~~I~~~e~v~-a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC-VN----GHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC-BT----TBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCcccCCCcccceEEE-EC----CCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 358999999998777775 44 889999999999999999888887 47999999999999987
No 45
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.52 E-value=2.6e-15 Score=111.26 Aligned_cols=107 Identities=20% Similarity=0.325 Sum_probs=78.3
Q ss_pred CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCceeeeCCcccCHhH
Q psy15163 52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYFHYKGNVYCLRD 130 (176)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~~ 130 (176)
.++.+||..|+..+..+ ..+|..|+++|...+.++.+. ++.||++||+|..|+++|. +..|+..++++||+.|
T Consensus 52 ~~g~~yC~~cy~~~~~~--~~~C~~C~~~I~~~e~~i~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c 125 (188)
T 1rut_X 52 KSGMILCRNDYIRLFGN--SGACSACGQSIPASELVMRAQ----GNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 125 (188)
T ss_dssp ETTEEECHHHHHHHHSC--CEECTTTCCEECTTSEEEEET----TEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGG
T ss_pred eCCcccccccccccccc--CCccccCCCccccCcEEEEcC----CCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHH
Confidence 34567788777665442 126999999999777777776 8899999999999999995 5679999999999999
Q ss_pred HhhCCCcccccccccc-----------cccCceEEeCCCccccCCeec
Q psy15163 131 YATMLDIPRCHACDEL-----------IFVNEYTLAENKTFHVKHFCC 167 (176)
Q Consensus 131 y~~~~~~~~C~~C~~~-----------I~~~~~~~a~~~~~H~~CF~C 167 (176)
|.+++. ++|...+.. +.++ ...++..||++..+.
T Consensus 126 ~~~~~~-~~~~~~g~~~~~~~~~~~v~vvge--p~l~g~~~~~~~~r~ 170 (188)
T 1rut_X 126 RPTALI-NGHLNSGGSGGSGGSGGDVMVVGE--PTLMGGEFGDEDERL 170 (188)
T ss_dssp CCTTTC-----------------CCCEECCC--CEETTCCCCCTTEEE
T ss_pred HHHHhc-ccccccCCCCcccccCCcccccCC--CcccCCCCCCCCCce
Confidence 999999 999888762 2122 246788999999885
No 46
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=3.7e-15 Score=95.71 Aligned_cols=51 Identities=29% Similarity=0.492 Sum_probs=47.2
Q ss_pred CcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 123 g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
+.+||+.||.++|+ ++|..|+++|.+ +++.|+++.||++||+|..|+++|.
T Consensus 2 ~~~yC~~dy~~~~~-~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~ 52 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG-TRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFP 52 (81)
T ss_dssp CCCCCCSCGGGSCC-CBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCC
T ss_pred CCCcchHHHHhHhC-CcCccccCEecc-ceEEECCceeCccCCccccCCCCCC
Confidence 46899999999999 999999999974 6778999999999999999999986
No 47
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.51 E-value=9.5e-15 Score=101.10 Aligned_cols=61 Identities=26% Similarity=0.679 Sum_probs=53.0
Q ss_pred CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC--CCceeeeCCcccCHhHHhhCCC
Q psy15163 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLD 136 (176)
Q Consensus 71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~y~~~~~ 136 (176)
..+|++|+++|...+ ++.++ ++.||++||+|..|+++|. +..|+.+++++||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~-~v~a~----~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF-LLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSS-EEEET----TEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcE-EEEeC----CcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 459999999999554 44565 8899999999999999996 4689999999999999999885
No 48
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.2e-14 Score=93.30 Aligned_cols=74 Identities=22% Similarity=0.444 Sum_probs=60.9
Q ss_pred CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCC-cccCHhHH
Q psy15163 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKG-NVYCLRDY 131 (176)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g-~~yC~~~y 131 (176)
++++||..++..+.++ +|+.|+++|. ++.+ .+. ++.||++||+|..|+++|....++..++ .+||..||
T Consensus 1 ~~~~yC~~dy~~~~~~----~C~~C~~~I~-~~~v-~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~ 70 (81)
T 1v6g_A 1 GSSGSSGLDYQRLYGT----RCFSCDQFIE-GEVV-SAL----GKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70 (81)
T ss_dssp CCCCCCCSCGGGSCCC----BCTTTCCBCC-SCCE-EET----TEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHH
T ss_pred CCCCcchHHHHhHhCC----cCccccCEec-cceE-EEC----CceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhh
Confidence 3568999999988876 9999999998 5544 555 8899999999999999997666666555 57999999
Q ss_pred hhCCC
Q psy15163 132 ATMLD 136 (176)
Q Consensus 132 ~~~~~ 136 (176)
.+.+.
T Consensus 71 ~~~~~ 75 (81)
T 1v6g_A 71 LPVSV 75 (81)
T ss_dssp SCCSS
T ss_pred cccCC
Confidence 77665
No 49
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=5.3e-15 Score=94.98 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=47.3
Q ss_pred CCcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 122 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
+|++||+.||. +++ ++|..|+++|.+ .++.|+++.||++||+|..|+++|.+
T Consensus 2 ~g~~yC~~~y~-~~~-~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATL-EKCATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDG 53 (81)
T ss_dssp CCCCCCCCCCC-SSC-CBCTTTCCBCCS-CCEEETTEEECTTTCBCSSSCCBCTT
T ss_pred cCCEECHHHhh-cCC-CccccCCCeecc-eeEEECCccccHHhcCcccCCCccCC
Confidence 68999999998 788 999999999975 57789999999999999999999863
No 50
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=6.4e-15 Score=94.73 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=48.5
Q ss_pred CCcccCHhHHhhCCCcccccccccccccC-ceEEeCCCccccCCeecccCCcccCC
Q psy15163 122 KGNVYCLRDYATMLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++.+||+.||.++++ ++|..|+++|... .++.|+++.||++||+|..|+++|.+
T Consensus 1 ~~~~yC~~cy~~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 55 (82)
T 1x63_A 1 GSSGSSGKCTTREDS-PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT 55 (82)
T ss_dssp CCSCCCCCCCSCCCS-CBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTT
T ss_pred CCCcCchhHHccccC-CcCccCCcccccCceEEEECccccccccCchhhCCCccCC
Confidence 368999999999999 9999999999854 45789999999999999999999863
No 51
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=88.45 Aligned_cols=59 Identities=25% Similarity=0.676 Sum_probs=51.4
Q ss_pred cccccccccccCCCeEEEEeccCCCcccC--ccCcccccCccccCCCceeeeCCcccC-HhHHhhC
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWH--PQCFVCSTCDELLVDLMYFHYKGNVYC-LRDYATM 134 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC-~~~y~~~ 134 (176)
.+|.+|+++|.+++.++.+. ++.|| ++||+|..|+++|.+..|+.++|++|| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~----~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYN----NFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEET----TEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEEC----CCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 38999999999754455665 88999 999999999999999899999999999 8888654
No 52
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.6e-14 Score=90.98 Aligned_cols=59 Identities=12% Similarity=0.392 Sum_probs=51.9
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCceeeeCCcccCHhHHhhCCC
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYFHYKGNVYCLRDYATMLD 136 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~~y~~~~~ 136 (176)
..|++|+++|.. +.+ .++ ++.||++||+|..|+++|. +..|+..++++||+.||.++++
T Consensus 6 ~~C~~C~~~I~~-~~v-~a~----~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL-EAG----EKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CSCSSSCCCCSS-CCB-CCS----SCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcccCCCEecC-eeE-EeC----CCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 489999999984 544 554 8899999999999999998 7789999999999999998876
No 53
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.42 E-value=3.8e-14 Score=98.32 Aligned_cols=76 Identities=22% Similarity=0.557 Sum_probs=66.0
Q ss_pred CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccC--ccCcccccCccccCCCceeeeCCcccCHh
Q psy15163 52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWH--PQCFVCSTCDELLVDLMYFHYKGNVYCLR 129 (176)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~ 129 (176)
.++.++|..|+.++.++ +|..|+++|.+++.++.+. ++.|| ++||+|..|+++|.+..|+..++++||+.
T Consensus 48 ~~g~~yC~~cy~~~~~~----~C~~C~~~I~~~~~~~~a~----~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~ 119 (126)
T 2xqn_T 48 VNDKPVCKPCYVKNHAV----VCQGCHNAIDPEVQRVTYN----NFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSV 119 (126)
T ss_dssp ETTEEEEHHHHHHHSCC----BCTTTCSBCCTTSCEEEET----TEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSH
T ss_pred ECCEEechHHhCcCcCc----cCcccCCcCCcCceEEECC----CCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchH
Confidence 45667888888877665 9999999999766666776 88999 99999999999999888999999999998
Q ss_pred HHhhCC
Q psy15163 130 DYATML 135 (176)
Q Consensus 130 ~y~~~~ 135 (176)
+|.++|
T Consensus 120 ~~~~~f 125 (126)
T 2xqn_T 120 ECKKRM 125 (126)
T ss_dssp HHHHSC
T ss_pred Hhhhhc
Confidence 888776
No 54
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.41 E-value=3.5e-14 Score=103.36 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=75.5
Q ss_pred CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCceee-eCCcccCHh
Q psy15163 52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYFH-YKGNVYCLR 129 (176)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~-~~g~~yC~~ 129 (176)
.++.+||..|+..+.++ +|..|+++|..++.++.+. ++.||++||+|..|+++|. +..|+. .++++||+.
T Consensus 50 ~~g~~yC~~~y~~~f~~----~C~~C~~~I~~~~~v~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~ 121 (169)
T 2rgt_A 50 RGESVYCKDDFFKRFGT----KCAACQLGIPPTQVVRRAQ----DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKA 121 (169)
T ss_dssp SSSCEECHHHHHHHHSC----BCTTTCCBCCTTSEEEEET----TEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHH
T ss_pred cCCeeeecccccccccc----cccccccccCCCcEEEEcC----CceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHH
Confidence 45678888888877665 9999999999877777776 8899999999999999996 456654 688999999
Q ss_pred HHhhCCCcccccccccccccCceEEeCCCccccCCee
Q psy15163 130 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFC 166 (176)
Q Consensus 130 ~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~ 166 (176)
||.+.+. ..+.. .+.-..+..+.+.+..+|...|.
T Consensus 122 c~~~~~~-~~~~~-~~~~rprt~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 122 DYETAKQ-GGSGG-SGGSGGGTPMVAASPERHDGGLQ 156 (169)
T ss_dssp HHHHHHH-CC-----------EEEECCCCEECCSSCC
T ss_pred HHHHHhh-ccCCC-CCCcCCCCcccHHHHHHHHHHHh
Confidence 9988775 44322 11111223445666667776664
No 55
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.38 E-value=2.5e-14 Score=99.83 Aligned_cols=79 Identities=16% Similarity=0.386 Sum_probs=64.7
Q ss_pred CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCcccc-CCCceeeeCCcccCHhH
Q psy15163 52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELL-VDLMYFHYKGNVYCLRD 130 (176)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~g~~yC~~~ 130 (176)
.++.++|..|+..+..+ ..+|..|+++|...+.++.+. ++.||++||+|..|+++| .+..|+..++++||+.|
T Consensus 49 ~~g~~yC~~~y~~~~~~--~~~C~~C~~~I~~~e~~~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c 122 (131)
T 2xjy_A 49 KLGRKLCRRDYLRLFGQ--DGLCASCDKRIRAYEMTMRVK----DKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 122 (131)
T ss_dssp ETTEEECHHHHHHHHCC--CEECTTTCCEECTTSEEEEET----TEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGG
T ss_pred ECCEEeecCchhhhCCC--ccChhhcCCccCccceeEeeC----CceECccCcccCCCCCCCCCCCEEEEECCEEEcHHH
Confidence 34567777777655432 127999999999777777776 889999999999999999 46779999999999999
Q ss_pred HhhCCC
Q psy15163 131 YATMLD 136 (176)
Q Consensus 131 y~~~~~ 136 (176)
|.++++
T Consensus 123 ~~~~~~ 128 (131)
T 2xjy_A 123 IYEWTK 128 (131)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988765
No 56
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.25 E-value=9.2e-13 Score=96.95 Aligned_cols=73 Identities=19% Similarity=0.405 Sum_probs=57.0
Q ss_pred CCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCceee-eCCcccCHhHH
Q psy15163 54 NGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYFH-YKGNVYCLRDY 131 (176)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~-~~g~~yC~~~y 131 (176)
+.+||..|+..+.. ++|..|+++|...+.++.+. ++.||++||+|..|+++|. +..|+. .++++||+.||
T Consensus 106 g~~yC~~~y~~~f~----~kC~~C~~~I~~~~~v~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy 177 (182)
T 2jtn_A 106 ESVYCKDDFFKRFG----TKCAACQLGIPPTQVVRRAQ----DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177 (182)
T ss_dssp TEEECHHHHHHTTS----CCCTTTCCCCCSSCCCCEET----TEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHH
T ss_pred CEeeecCccccccc----cccccCCCccCCCceEEecC----CCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHH
Confidence 34555555555444 49999999999777666665 8899999999999999997 456654 68999999999
Q ss_pred hhC
Q psy15163 132 ATM 134 (176)
Q Consensus 132 ~~~ 134 (176)
.+.
T Consensus 178 ~~~ 180 (182)
T 2jtn_A 178 ETA 180 (182)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 57
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=1.5e-11 Score=77.19 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=36.7
Q ss_pred hCCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 133 ~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
.+|+ ++|..|+++|.+ .++.|+++.||++||+|..|+.+|.
T Consensus 2 s~~~-~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~ 42 (73)
T 1wig_A 2 SSGS-SGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFA 42 (73)
T ss_dssp CCSC-CSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCC
T ss_pred CcCc-CCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCC
Confidence 3567 999999999976 5677999999999999999999986
No 58
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.14 E-value=1.8e-11 Score=75.17 Aligned_cols=42 Identities=36% Similarity=0.615 Sum_probs=37.0
Q ss_pred hCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 133 ~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++++ ++|..|+++|. ++++.|+++.||++||+|..|+++|.+
T Consensus 2 ~~~~-~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~ 43 (66)
T 1nyp_A 2 SMGV-PICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLG 43 (66)
T ss_dssp CCCC-CEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSS
T ss_pred CcCC-CCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCC
Confidence 3566 89999999998 567889999999999999999999863
No 59
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.11 E-value=3.8e-11 Score=75.81 Aligned_cols=42 Identities=24% Similarity=0.547 Sum_probs=37.7
Q ss_pred CCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
.+. ++|..|+++|..++++.|+++.||++||+|..|+++|.+
T Consensus 7 ~~~-~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 48 (76)
T 2cu8_A 7 GMA-SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTP 48 (76)
T ss_dssp CCC-CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCT
T ss_pred CCC-CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCC
Confidence 456 899999999986778889999999999999999999863
No 60
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.10 E-value=3.3e-11 Score=76.10 Aligned_cols=43 Identities=19% Similarity=0.424 Sum_probs=37.7
Q ss_pred hCCCccccccccccccc---CceEEeCCCccccCCeecccCCcccCC
Q psy15163 133 TMLDIPRCHACDELIFV---NEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 133 ~~~~~~~C~~C~~~I~~---~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++|+ ++|..|+++|.+ .+++.|+++.||++||+|..|+++|.+
T Consensus 2 ~~~~-~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~ 47 (76)
T 1x68_A 2 SSGS-SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVG 47 (76)
T ss_dssp TTCC-CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSS
T ss_pred CccC-CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCC
Confidence 4677 999999999974 367889999999999999999999863
No 61
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.08 E-value=5.3e-11 Score=74.24 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=37.8
Q ss_pred hCCCccccccccccccc-CceEEeCCCccccCCeecccCCcccCC
Q psy15163 133 TMLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 133 ~~~~~~~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++++ ++|..|+++|.. +.++.|+++.||++||+|..|+++|.+
T Consensus 2 ~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 45 (72)
T 1wyh_A 2 SSGS-SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGS 45 (72)
T ss_dssp CCCC-CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTT
T ss_pred CccC-CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCC
Confidence 4567 899999999986 367889999999999999999999863
No 62
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.08 E-value=6.1e-11 Score=74.02 Aligned_cols=42 Identities=21% Similarity=0.456 Sum_probs=36.6
Q ss_pred CCCccccccccccccc---CceEEeCCCccccCCeecccCCcccCC
Q psy15163 134 MLDIPRCHACDELIFV---NEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~---~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
.+. ++|..|+++|.+ +.++.|+++.||++||+|..|+++|.+
T Consensus 3 ~~~-~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~ 47 (72)
T 1x4l_A 3 SGS-SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVG 47 (72)
T ss_dssp SCS-CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTT
T ss_pred CCC-CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCC
Confidence 345 899999999985 367889999999999999999999863
No 63
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.08 E-value=4.9e-11 Score=74.42 Aligned_cols=43 Identities=19% Similarity=0.440 Sum_probs=37.9
Q ss_pred hCCCcccccccccccccC-ceEEeCCCccccCCeecccCCcccCC
Q psy15163 133 TMLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 133 ~~~~~~~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++|+ ++|..|+++|.+. .++.|+++.||++||+|..|+++|.+
T Consensus 2 ~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 45 (72)
T 1x4k_A 2 SSGS-SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGT 45 (72)
T ss_dssp CSCC-CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCS
T ss_pred CccC-CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCC
Confidence 4677 9999999999865 47789999999999999999999863
No 64
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.05 E-value=6.8e-11 Score=74.63 Aligned_cols=39 Identities=28% Similarity=0.683 Sum_probs=35.5
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
|+|..|+++|..++++.++++.||++||+|..|+++|.+
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 39 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCT
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCC
Confidence 689999999986778889999999999999999999864
No 65
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.05 E-value=6.9e-11 Score=77.08 Aligned_cols=48 Identities=23% Similarity=0.494 Sum_probs=40.1
Q ss_pred CHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 127 CLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 127 C~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
....+...+. ++|..|+++|. ++++.|+++.||++||+|..|+++|.+
T Consensus 16 ~~~~~~~~~~-~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~ 63 (90)
T 2dar_A 16 AEHIPAGKRT-PMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAY 63 (90)
T ss_dssp CEEECTTTCC-CBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSS
T ss_pred cccCCCCCCC-CCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCC
Confidence 3334556777 99999999996 567779999999999999999999863
No 66
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.05 E-value=6.9e-11 Score=72.40 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=35.9
Q ss_pred CCccccccccccccc-CceEEeCCCccc--cCCeecccCCcccCC
Q psy15163 135 LDIPRCHACDELIFV-NEYTLAENKTFH--VKHFCCYECDKIITQ 176 (176)
Q Consensus 135 ~~~~~C~~C~~~I~~-~~~~~a~~~~~H--~~CF~C~~C~~~l~~ 176 (176)
|+ ++|..|+++|.+ +.++.|+++.|| ++||+|..|+++|.+
T Consensus 1 fa-~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~ 44 (65)
T 2iyb_E 1 HA-VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIG 44 (65)
T ss_dssp -C-EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTT
T ss_pred Cc-CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCC
Confidence 45 899999999985 467889999999 999999999999863
No 67
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.04 E-value=8.1e-11 Score=75.13 Aligned_cols=38 Identities=37% Similarity=0.675 Sum_probs=35.4
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
++|..|+++|..++++.|+++.||++||+|..|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~ 53 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT 53 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS
T ss_pred CCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC
Confidence 79999999998677888999999999999999999986
No 68
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.04 E-value=1.2e-10 Score=72.72 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=36.2
Q ss_pred CCCcccccccccccccC-ceEEeCCCccccCCeecccCCcccC
Q psy15163 134 MLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
.++ ++|..|+++|.+. .++.|+++.||++||+|..|+++|.
T Consensus 3 ~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 44 (72)
T 1x61_A 3 SGS-SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR 44 (72)
T ss_dssp SCC-CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT
T ss_pred CCC-CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC
Confidence 355 8999999999864 4778999999999999999999985
No 69
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.04 E-value=1.2e-10 Score=72.30 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=36.1
Q ss_pred CCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
.++ ++|..|+++|.+ +.+.++++.||++||+|..|+++|.+
T Consensus 3 ~~~-~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~ 43 (70)
T 2d8z_A 3 SGS-SGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSG 43 (70)
T ss_dssp CCC-CBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTT
T ss_pred CCC-CCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCc
Confidence 466 899999999975 46779999999999999999999863
No 70
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=1.1e-10 Score=74.24 Aligned_cols=41 Identities=27% Similarity=0.591 Sum_probs=35.7
Q ss_pred CCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
.+. ++|..|+++|. ++++.|+++.||++||+|..|+.+|.+
T Consensus 13 ~~~-~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGK-YICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTA 53 (79)
T ss_dssp CCC-CBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCT
T ss_pred cCC-CCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCC
Confidence 344 89999999997 456779999999999999999999863
No 71
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=1.1e-10 Score=74.92 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=35.5
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++|..|+++|...+++.++++.||++||+|..|+++|.+
T Consensus 16 ~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~ 54 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWP 54 (82)
T ss_dssp CBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCT
T ss_pred CCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCC
Confidence 799999999987777779999999999999999999863
No 72
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=1.5e-10 Score=71.81 Aligned_cols=38 Identities=29% Similarity=0.685 Sum_probs=34.6
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++|..|+++|.+ +++.|+++.||++||+|..|+.+|.+
T Consensus 6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSS
T ss_pred CcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCC
Confidence 899999999975 57789999999999999999999864
No 73
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=1.5e-10 Score=71.62 Aligned_cols=40 Identities=20% Similarity=0.476 Sum_probs=35.5
Q ss_pred CCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
.++ ++|..|+++|.+ +++.++++.||++||+|..|+++|.
T Consensus 3 ~~~-~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~ 42 (69)
T 2cur_A 3 SGS-SGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLA 42 (69)
T ss_dssp CCC-CCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCT
T ss_pred CCc-CCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCC
Confidence 455 899999999975 4677999999999999999999985
No 74
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.00 E-value=9.9e-11 Score=72.83 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=36.5
Q ss_pred hCCCcccccccccccccCc-eEEeCCCccccCCeecccCCcccC
Q psy15163 133 TMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 133 ~~~~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
..+. ++|..|+++|.+.+ ++.++++.||++||+|..|+++|.
T Consensus 8 ~~~~-~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~ 50 (72)
T 3f6q_B 8 GSAS-ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP 50 (72)
T ss_dssp CCTT-CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCG
T ss_pred CcCC-ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCC
Confidence 3556 89999999998665 457999999999999999999985
No 75
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.99 E-value=1.7e-10 Score=73.62 Aligned_cols=39 Identities=26% Similarity=0.636 Sum_probs=35.9
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++|..|+++|..++++.++++.||++||+|..|+++|.+
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 46 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDS 46 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECS
T ss_pred CcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCC
Confidence 899999999986778889999999999999999999863
No 76
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.96 E-value=2.7e-10 Score=78.59 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=37.2
Q ss_pred hCCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 133 ~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
..+. ++|..|+++|.+..++.|+++.||++||+|..|+++|.
T Consensus 58 ~~~~-~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~ 99 (123)
T 2l4z_A 58 GLSW-KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLG 99 (123)
T ss_dssp CSSC-SBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGG
T ss_pred CccC-CcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCccc
Confidence 3445 89999999998776788999999999999999999984
No 77
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.96 E-value=2.9e-10 Score=74.20 Aligned_cols=39 Identities=26% Similarity=0.658 Sum_probs=36.0
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++|..|+++|.+.+++.++++.||++||+|..|+.+|.+
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 54 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSL 54 (91)
T ss_dssp CBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCT
T ss_pred CcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCC
Confidence 899999999987678889999999999999999999863
No 78
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.96 E-value=1.9e-10 Score=79.32 Aligned_cols=44 Identities=25% Similarity=0.588 Sum_probs=38.3
Q ss_pred HhhCCCcc--cccccccccccC-ceEEeCCCccccCCeecccCCcccC
Q psy15163 131 YATMLDIP--RCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 131 y~~~~~~~--~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
|.++|+ + +|..|+++|... .++.|+++.||++||+|..|+++|.
T Consensus 1 Y~r~fg-~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~ 47 (123)
T 2l3k_A 1 YLRLFG-QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFS 47 (123)
T ss_dssp CCSSSS-SSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCC
T ss_pred ChhhhC-CCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCC
Confidence 567888 7 999999999863 4567999999999999999999983
No 79
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.94 E-value=4e-10 Score=76.61 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=35.5
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
++|..|+++|.+.+++.|+++.||++||+|..|+++|.
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~ 41 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLG 41 (114)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCC
T ss_pred CCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchh
Confidence 79999999998776788999999999999999999995
No 80
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.93 E-value=3.4e-10 Score=71.46 Aligned_cols=41 Identities=15% Similarity=0.432 Sum_probs=35.7
Q ss_pred CCCccccccccccccc-CceEEeCCCccccCCeecccCCcccC
Q psy15163 134 MLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
.++ ++|..|+++|.+ +.++.++++.||++||+|..|+++|.
T Consensus 9 ~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 50 (77)
T 1g47_A 9 LAS-ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP 50 (77)
T ss_dssp CCC-CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCG
T ss_pred CCC-CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCC
Confidence 345 899999999974 45677999999999999999999986
No 81
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.90 E-value=5.9e-10 Score=72.44 Aligned_cols=38 Identities=29% Similarity=0.549 Sum_probs=34.5
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
++|..|+++|.+ .++.|+++.||++||+|..|+++|.+
T Consensus 26 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~ 63 (89)
T 1x64_A 26 PLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQ 63 (89)
T ss_dssp CBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTT
T ss_pred CCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCC
Confidence 799999999976 56789999999999999999999863
No 82
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.89 E-value=4.8e-10 Score=71.22 Aligned_cols=37 Identities=19% Similarity=0.544 Sum_probs=33.9
Q ss_pred ccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
++|..|+++|.+ +++.|+++.||++||+|..|+++|.
T Consensus 16 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 1x62_A 16 PMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLK 52 (79)
T ss_dssp CCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHH
T ss_pred CccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCC
Confidence 799999999976 5778999999999999999999874
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.87 E-value=4.1e-10 Score=77.49 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=36.8
Q ss_pred CCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163 134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~ 175 (176)
++. ++|..|+++|.+..++.|+++.||++||+|..|+.+|.
T Consensus 3 ~~~-~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~ 43 (122)
T 1m3v_A 3 LSW-KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLG 43 (122)
T ss_dssp SCC-CCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTT
T ss_pred CCC-CCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCccc
Confidence 345 89999999998877678999999999999999999985
No 84
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.84 E-value=1.5e-09 Score=71.98 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=36.8
Q ss_pred CCCccccccccccccc-CceEEeCCCccccCCeecccCCcccCC
Q psy15163 134 MLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKIITQ 176 (176)
Q Consensus 134 ~~~~~~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~l~~ 176 (176)
.+. ++|..|+++|.. +.++.++++.||++||+|..|+++|.+
T Consensus 3 ~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 45 (101)
T 2cup_A 3 SGS-SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLAN 45 (101)
T ss_dssp SCC-CBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTS
T ss_pred CCC-CcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCc
Confidence 355 899999999974 677889999999999999999999863
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.04 E-value=1.1e-06 Score=45.48 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=25.5
Q ss_pred ccccccccccccCceEEeCCCccccCCe
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHF 165 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF 165 (176)
++|..|++.|...+.+.+.++.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 7999999999877777799999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.97 E-value=9.3e-07 Score=45.72 Aligned_cols=28 Identities=29% Similarity=0.787 Sum_probs=24.5
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF 104 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf 104 (176)
..|..|++.|+..|.+... |+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~-----g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCL-----DKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSS-----SSCCCGGGC
T ss_pred CcCCccCCEEecceeEEEC-----CeEecccCC
Confidence 3899999999999888644 889999998
No 87
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=83.89 E-value=0.7 Score=29.92 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=27.5
Q ss_pred cccCccccCCCceeeeCCcccCHhHHhh---CCCccccccccccccc
Q psy15163 106 CSTCDELLVDLMYFHYKGNVYCLRDYAT---MLDIPRCHACDELIFV 149 (176)
Q Consensus 106 C~~C~~~l~~~~~~~~~g~~yC~~~y~~---~~~~~~C~~C~~~I~~ 149 (176)
|..|+.|+........=...+|..|+.. +-. ..|..|+.+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~-k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD-KMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC-CBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccC-CCCcCcCCeeee
Confidence 5556666654333334455778888754 334 689999999954
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.47 E-value=1.3 Score=28.90 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=34.1
Q ss_pred ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccCce
Q psy15163 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEY 152 (176)
Q Consensus 73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~ 152 (176)
.|..|+..-...+.+ .-... ++.||..|+.=.. .+ ...+..+|..| ..|..|++.-....+
T Consensus 9 ~C~~C~~~g~~~~ll-~C~~C--~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C-------~~C~~C~~~~~~~~l 69 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQF-FCTTC--GQHYHGMCLDIAV--TP-------LKRAGWQCPEC-------KVCQNCKQSGEDSKM 69 (111)
T ss_dssp CBTTTCCCCCTTTSE-ECSSS--CCEECTTTTTCCC--CT-------TTSTTCCCTTT-------CCCTTTCCCSCCTTE
T ss_pred CCcCCCCCCCCcCCe-ECCCC--CCCcChHHhCCcc--cc-------ccccCccCCcC-------CcccccCccCCCCCe
Confidence 566665543212223 22223 3467777764221 11 12344556555 256666665433333
Q ss_pred EE--eCCCccccCCe
Q psy15163 153 TL--AENKTFHVKHF 165 (176)
Q Consensus 153 ~~--a~~~~~H~~CF 165 (176)
+. .=++.||..|.
T Consensus 70 l~Cd~C~~~yH~~Cl 84 (111)
T 2ysm_A 70 LVCDTCDKGYHTFCL 84 (111)
T ss_dssp EECSSSCCEEEGGGS
T ss_pred eECCCCCcHHhHHhc
Confidence 32 23455666654
No 89
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=82.28 E-value=1.2 Score=29.37 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=24.1
Q ss_pred eCCcccCHhHHhhCCCcccccccccccccCceEE--eCCCccccCCee
Q psy15163 121 YKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL--AENKTFHVKHFC 166 (176)
Q Consensus 121 ~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~--a~~~~~H~~CF~ 166 (176)
..+..+|..| ..|..|++.-.++.++. .=++.||..|..
T Consensus 49 ~~~~W~C~~C-------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 49 KTYKWQCIEC-------KSCILCGTSENDDQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp HHTTCCCGGG-------CCCTTTTCCTTTTTEEECSSSCCEEETTTSS
T ss_pred CCCccCcccc-------CccCcccccCCCCceEEcCCCCccccccccC
Confidence 3445667666 46778877654455553 335778887754
No 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.69 E-value=0.67 Score=27.00 Aligned_cols=46 Identities=28% Similarity=0.614 Sum_probs=27.3
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhhCC--CcccccccccccccC
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVN 150 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~ 150 (176)
+.|..|...+... ....=|..||..|..+.+ ....|..|+..|..+
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4555555555332 223455667777776543 115899999888544
No 91
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.92 E-value=1.3 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=16.8
Q ss_pred CCcccCHhHHhhCCC----cccccccccccccC
Q psy15163 122 KGNVYCLRDYATMLD----IPRCHACDELIFVN 150 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~----~~~C~~C~~~I~~~ 150 (176)
=|..||..|..+.+. ...|..|++.|...
T Consensus 38 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 38 CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 344455555544331 14788898888543
No 92
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.52 E-value=0.95 Score=26.86 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=26.8
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhhCC--CcccccccccccccCceE
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT 153 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~~~~ 153 (176)
+.|..|...+........=|..||..|..+.+ . ..|..|+..|.....+
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCSC
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCccccc
Confidence 44555555443311112445566776664432 3 6899999988654443
No 93
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=79.50 E-value=1.4 Score=26.49 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=34.7
Q ss_pred cCcccccCccccCCCceeeeCCcccCHhHHhhCCC--cccccccccccccCceE
Q psy15163 102 QCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIFVNEYT 153 (176)
Q Consensus 102 ~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~--~~~C~~C~~~I~~~~~~ 153 (176)
+-|.|..|...+.. .....-|..||..|..+.+. ...|..|+..+....++
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 44778888777754 34456788888888765432 15899999998654443
No 94
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.63 E-value=1.9 Score=28.24 Aligned_cols=43 Identities=16% Similarity=0.437 Sum_probs=21.9
Q ss_pred cccccCccccCCCceee-eCCcccCHhHHhhCCCcccccccccccc
Q psy15163 104 FVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLDIPRCHACDELIF 148 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~~~~~C~~C~~~I~ 148 (176)
+.|..|...+.. .... .=|..||..|..+.+. ..|..|+..+.
T Consensus 23 ~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCS
T ss_pred CCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCc
Confidence 444444444432 2222 3445556666555554 56777776664
No 95
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=74.45 E-value=2.4 Score=25.34 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=10.4
Q ss_pred ccccccccccccCc
Q psy15163 138 PRCHACDELIFVNE 151 (176)
Q Consensus 138 ~~C~~C~~~I~~~~ 151 (176)
..|..|+..+....
T Consensus 54 ~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 54 SSCPVCGISYSFEH 67 (79)
T ss_dssp CCCSSSCCCCCSSG
T ss_pred CcCCCCCCcCCHhh
Confidence 57999998886543
No 96
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.41 E-value=3.3 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=16.9
Q ss_pred CCcccCHhHHhhCCCc-ccccccccccccC
Q psy15163 122 KGNVYCLRDYATMLDI-PRCHACDELIFVN 150 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~~-~~C~~C~~~I~~~ 150 (176)
=+..||..|..+.+.. ..|..|+..|...
T Consensus 33 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 33 CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 3445566665543221 5788888888543
No 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=72.73 E-value=1.7 Score=28.72 Aligned_cols=73 Identities=18% Similarity=0.405 Sum_probs=47.4
Q ss_pred cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCC------ceeeeCCcccCHhHHhhCC--Cccccccc
Q psy15163 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDL------MYFHYKGNVYCLRDYATML--DIPRCHAC 143 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~------~~~~~~g~~yC~~~y~~~~--~~~~C~~C 143 (176)
..|..|++.+...... .. ....+-+.|..|...+... .....=|..||..|..+-+ . ..|..|
T Consensus 49 ~~CP~Cr~~~~~~~l~-~l-------~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~C 119 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYH-PI-------YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTC 119 (133)
T ss_dssp SBCTTTCCBCTTTCEE-EC-------BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTT
T ss_pred CCCCCCCCcCcccccc-cc-------ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCC
Confidence 4799999999754432 22 2344556788887776431 1334567888988875432 3 689999
Q ss_pred ccccccCceE
Q psy15163 144 DELIFVNEYT 153 (176)
Q Consensus 144 ~~~I~~~~~~ 153 (176)
+..|..+.+.
T Consensus 120 r~~~~~~~~~ 129 (133)
T 4ap4_A 120 RKKINHKRYH 129 (133)
T ss_dssp CCBCCGGGEE
T ss_pred CCcCChhcce
Confidence 9998766554
No 98
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=72.67 E-value=2.8 Score=25.55 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=29.2
Q ss_pred cccccCccccCCC--ceee-eCCcccCHhHHhhCC---CcccccccccccccCce
Q psy15163 104 FVCSTCDELLVDL--MYFH-YKGNVYCLRDYATML---DIPRCHACDELIFVNEY 152 (176)
Q Consensus 104 f~C~~C~~~l~~~--~~~~-~~g~~yC~~~y~~~~---~~~~C~~C~~~I~~~~~ 152 (176)
+.|..|-.++... .+.. .=|..+|..|+.+.. . ..|..|.+++....+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~-~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN-GLCPACRKPYPEDPA 65 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSC-SBCTTTCCBCSSCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCC-CCCCCCCCccCCCch
Confidence 4566665555321 1111 256677888876654 3 589999999965443
No 99
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.36 E-value=2.8 Score=24.10 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=28.6
Q ss_pred cccccCcc-ccCCCc---eeeeCCcccCHhHHhhC---CCcccccccccccccCceE
Q psy15163 104 FVCSTCDE-LLVDLM---YFHYKGNVYCLRDYATM---LDIPRCHACDELIFVNEYT 153 (176)
Q Consensus 104 f~C~~C~~-~l~~~~---~~~~~g~~yC~~~y~~~---~~~~~C~~C~~~I~~~~~~ 153 (176)
+.|..|.. .+.+.. ....=|..||..|..+. .. ..|..|++.|..+.+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA-GNCPECGTPLRKSNFR 59 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS-SSCTTTCCCCSSCCCE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCC-CcCCCCCCccccccce
Confidence 34555555 332221 22345666777776544 23 5799999999766554
No 100
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=70.56 E-value=3.1 Score=27.02 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=25.9
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhhCCC--cccccccccccc
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIF 148 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~--~~~C~~C~~~I~ 148 (176)
+.|..|...+.. .....=|..||..|..+.+. ...|..|+..|.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 455555555533 22334556677777765542 148999998874
No 101
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.55 E-value=2.1 Score=25.78 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=11.3
Q ss_pred ccccccccccccCce
Q psy15163 138 PRCHACDELIFVNEY 152 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~ 152 (176)
..|..|+..|....+
T Consensus 60 ~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 60 GNCPVCRVPYPFGNL 74 (85)
T ss_dssp BCCTTTCCCCCTTCC
T ss_pred CCCCCCCCcCCHHhC
Confidence 689999998865544
No 102
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=69.58 E-value=3 Score=28.13 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=14.8
Q ss_pred CcccCHhHHhhCC--Cccccccccccccc
Q psy15163 123 GNVYCLRDYATML--DIPRCHACDELIFV 149 (176)
Q Consensus 123 g~~yC~~~y~~~~--~~~~C~~C~~~I~~ 149 (176)
|..||..|..+.+ . ..|..|...|..
T Consensus 72 gH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 72 AHSFCSYCINEWMKRK-IECPICRKDIKS 99 (138)
T ss_dssp SCEEEHHHHHHHTTTC-SBCTTTCCBCCC
T ss_pred CCCccHHHHHHHHHcC-CcCCCCCCcCCC
Confidence 3445555543322 2 578888888843
No 103
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=69.35 E-value=4.7 Score=25.74 Aligned_cols=51 Identities=16% Similarity=0.056 Sum_probs=35.2
Q ss_pred ccCcccccCccccCCCceeeeCCcccCHhHHhhCC--CcccccccccccccCceE
Q psy15163 101 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT 153 (176)
Q Consensus 101 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~~~~ 153 (176)
++-|.|..|...+.+ .+....|..||..|-.+.+ . ..|..|++++....++
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNS-PTDPFNRQTLTESMLE 79 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSC-SBCSSSCCBCCTTSSE
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcC-CCCCCCCCCCChhhce
Confidence 556888888777655 4555678888887765433 3 6899999888654443
No 104
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.24 E-value=3.8 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=16.1
Q ss_pred CCcccCHhHHhhCCCc-cccccccccccc
Q psy15163 122 KGNVYCLRDYATMLDI-PRCHACDELIFV 149 (176)
Q Consensus 122 ~g~~yC~~~y~~~~~~-~~C~~C~~~I~~ 149 (176)
=+..||..|..+.+.. ..|..|+..|..
T Consensus 32 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 32 CAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp TTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3444555555433211 678888888854
No 105
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.08 E-value=2.6 Score=25.37 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=10.7
Q ss_pred ccccccccccccCc
Q psy15163 138 PRCHACDELIFVNE 151 (176)
Q Consensus 138 ~~C~~C~~~I~~~~ 151 (176)
..|..|+..|....
T Consensus 60 ~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 60 SSCPVCRISYQPEN 73 (85)
T ss_dssp CCCTTTCCSSCSSS
T ss_pred CcCCCCCCccCHHh
Confidence 68999999886543
No 106
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=68.55 E-value=2.1 Score=27.01 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=25.2
Q ss_pred cccccCccccCCCceee-eCCcccCHhHHhhCC--CcccccccccccccCc
Q psy15163 104 FVCSTCDELLVDLMYFH-YKGNVYCLRDYATML--DIPRCHACDELIFVNE 151 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~~ 151 (176)
+.|..|...+.. .... .=|..||..|..+.+ . ..|..|+..+....
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 23 LRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPD 71 (99)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGG
T ss_pred CCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhh
Confidence 445555544433 2222 345566776664432 3 57888988885433
No 107
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=68.19 E-value=3.7 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=22.4
Q ss_pred ccccCccccCCCceeeeCCcccC-HhHHhhC
Q psy15163 105 VCSTCDELLVDLMYFHYKGNVYC-LRDYATM 134 (176)
Q Consensus 105 ~C~~C~~~l~~~~~~~~~g~~yC-~~~y~~~ 134 (176)
.|..|...+....-+.++|+.|| +.|....
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccC
Confidence 46677777776677888999998 7776544
No 108
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=67.16 E-value=5.2 Score=25.43 Aligned_cols=51 Identities=12% Similarity=-0.015 Sum_probs=33.8
Q ss_pred ccCcccccCccccCCCceeeeCC-cccCHhHHhhCC--CcccccccccccccCceE
Q psy15163 101 PQCFVCSTCDELLVDLMYFHYKG-NVYCLRDYATML--DIPRCHACDELIFVNEYT 153 (176)
Q Consensus 101 ~~Cf~C~~C~~~l~~~~~~~~~g-~~yC~~~y~~~~--~~~~C~~C~~~I~~~~~~ 153 (176)
++-|.|..|...+.+ .+....| ..||..|-.+.+ . ..|..|++++....++
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~-~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIR 73 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTTTSE
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhC-CCCCCCCCCCChhhce
Confidence 455777777776655 4455566 888887765443 3 6899999888654443
No 109
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=66.68 E-value=2.2 Score=31.16 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=23.6
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~ 133 (176)
.+|..|+.......-...+|+.+|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 568888888776666667899999999864
No 110
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.36 E-value=2.2 Score=25.79 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=13.8
Q ss_pred CcccCHhHHhhCC--Ccccccccccccc
Q psy15163 123 GNVYCLRDYATML--DIPRCHACDELIF 148 (176)
Q Consensus 123 g~~yC~~~y~~~~--~~~~C~~C~~~I~ 148 (176)
|..||..|..+.+ . ..|..|+..|.
T Consensus 34 gH~fC~~Ci~~~~~~~-~~CP~Cr~~~~ 60 (81)
T 2csy_A 34 RHYFCESCALEHFRAT-PRCYICDQPTG 60 (81)
T ss_dssp SCEEEHHHHHHHHHHC-SBCSSSCCBCC
T ss_pred CCHhHHHHHHHHHHCC-CcCCCcCcccc
Confidence 3444555543221 2 57888888774
No 111
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.32 E-value=2.6 Score=27.04 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=23.0
Q ss_pred ccccCccccCCCceeeeCCcccCHhHHhhCCCc----ccccccccccccCc
Q psy15163 105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLDI----PRCHACDELIFVNE 151 (176)
Q Consensus 105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~----~~C~~C~~~I~~~~ 151 (176)
.|..|...+.. .....=|..||..|..+.+.. ..|..|+..|....
T Consensus 23 ~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 23 ECPICLELIKE-PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp SCSSSCCCCSS-CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCcccChhhcC-eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 44444444432 122234455666665433210 36888888886543
No 112
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=62.07 E-value=5.1 Score=24.63 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=35.1
Q ss_pred ccCcccccCccccCCCceeeeCCcccCHhHHhhCC--CcccccccccccccCceE
Q psy15163 101 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT 153 (176)
Q Consensus 101 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~~~~ 153 (176)
++-|.|..|...+.+ .+....|..||..|-.+.+ . ..|..|++++....++
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~~~l~ 64 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNS-PTDPFNRQMLTESMLE 64 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCGGGCE
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcC-CCCCCCcCCCChHhcc
Confidence 456888888777765 4555678889887754332 3 5899999888654443
No 113
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=61.68 E-value=4.1 Score=28.40 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=5.2
Q ss_pred cccccccccc
Q psy15163 73 TCKQCGQEVR 82 (176)
Q Consensus 73 ~C~~C~~~i~ 82 (176)
.|.-|...+.
T Consensus 20 ~C~IC~~~~~ 29 (170)
T 3hcs_A 20 ECPICLMALR 29 (170)
T ss_dssp BCTTTCSBCS
T ss_pred CCCCCChhhc
Confidence 5555555443
No 114
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=61.43 E-value=2.4 Score=26.31 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=7.9
Q ss_pred cccccccccc
Q psy15163 73 TCKQCGQEVR 82 (176)
Q Consensus 73 ~C~~C~~~i~ 82 (176)
.|..|..+|.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 7888888775
No 115
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=59.35 E-value=1.6 Score=24.82 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=20.4
Q ss_pred eCCcccCHhHHhhCC--CcccccccccccccCceE
Q psy15163 121 YKGNVYCLRDYATML--DIPRCHACDELIFVNEYT 153 (176)
Q Consensus 121 ~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~~~~ 153 (176)
.=|..||..|..+.+ . ..|..|+..|....+.
T Consensus 27 ~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 27 ECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH 60 (64)
T ss_dssp TTSCEEEHHHHHHHHHHC-SBCTTTCCBCTTTCEE
T ss_pred CCCCchhHHHHHHHHHcC-CCCCCCCccCCcccee
Confidence 455666777764322 3 5888999888655543
No 116
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=58.94 E-value=3.1 Score=26.40 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=28.5
Q ss_pred cccccCccccCCCcee-eeCCcccCHhHHhhCCCc--ccccccccccccCceE
Q psy15163 104 FVCSTCDELLVDLMYF-HYKGNVYCLRDYATMLDI--PRCHACDELIFVNEYT 153 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~-~~~g~~yC~~~y~~~~~~--~~C~~C~~~I~~~~~~ 153 (176)
+.|..|...+.. ... ..=|..||..|..+.+.. ..|..|...|....++
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 455666555543 222 344566777776543221 4799999888655544
No 117
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=58.94 E-value=4.4 Score=26.25 Aligned_cols=46 Identities=20% Similarity=0.438 Sum_probs=27.3
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhhCC---CcccccccccccccCc
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATML---DIPRCHACDELIFVNE 151 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~---~~~~C~~C~~~I~~~~ 151 (176)
+.|..|...+.. .....=|..||..|..+.+ . ..|..|+..|....
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMG-SYCPSCRYPCFPTD 72 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGG
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCc-CcCCCCCCCCCHhh
Confidence 556666655543 2334556677777765432 3 57888888875443
No 118
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.34 E-value=9.1 Score=22.66 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=17.5
Q ss_pred CCcc-cCHhHHhhCCCccccccccccccc
Q psy15163 122 KGNV-YCLRDYATMLDIPRCHACDELIFV 149 (176)
Q Consensus 122 ~g~~-yC~~~y~~~~~~~~C~~C~~~I~~ 149 (176)
=|.. +|..|..+. ..|..|++.|..
T Consensus 43 CgH~~~C~~C~~~~---~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 43 CGHLVTCKQCAEAV---DKCPMCYTVITF 68 (75)
T ss_dssp SCCCCBCHHHHHHC---SBCTTTCCBCCC
T ss_pred CCCHHHHHHHhhCC---CCCccCCceecC
Confidence 3444 677777543 589999999854
No 119
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=57.14 E-value=4.1 Score=26.08 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=29.3
Q ss_pred CcccccCccccCCCceee-eCCcccCHhHHhhCCCc-cccccccccccc
Q psy15163 103 CFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLDI-PRCHACDELIFV 149 (176)
Q Consensus 103 Cf~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~~~-~~C~~C~~~I~~ 149 (176)
-+.|..|...+.. .... .=|..||..|..+.+.. ..|..|+..|..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3566777666654 3333 56777888877543321 589999988854
No 120
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.65 E-value=4.2 Score=22.74 Aligned_cols=24 Identities=13% Similarity=0.193 Sum_probs=13.7
Q ss_pred CcccCHhHHhhCCCcccccccccccc
Q psy15163 123 GNVYCLRDYATMLDIPRCHACDELIF 148 (176)
Q Consensus 123 g~~yC~~~y~~~~~~~~C~~C~~~I~ 148 (176)
|..||..|..+ .. ..|..|++.+.
T Consensus 25 gH~fC~~Ci~~-~~-~~CP~Cr~~~~ 48 (56)
T 1bor_A 25 LHTLCSGCLEA-SG-MQCPICQAPWP 48 (56)
T ss_dssp SCCSBTTTCSS-SS-SSCSSCCSSSS
T ss_pred CCcccHHHHcc-CC-CCCCcCCcEee
Confidence 34445555433 23 57888888774
No 121
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.46 E-value=2.4 Score=25.74 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=6.6
Q ss_pred CcccccCccccC
Q psy15163 103 CFVCSTCDELLV 114 (176)
Q Consensus 103 Cf~C~~C~~~l~ 114 (176)
--.|..|...+.
T Consensus 15 i~~C~IC~~~i~ 26 (74)
T 2ct0_A 15 VKICNICHSLLI 26 (74)
T ss_dssp SCBCSSSCCBCS
T ss_pred CCcCcchhhHcc
Confidence 345566666553
No 122
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=55.94 E-value=3.8 Score=26.66 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=15.8
Q ss_pred CCCCcccccccccccCCCeEEE
Q psy15163 68 PRSGKTCKQCGQEVRSGDLAVY 89 (176)
Q Consensus 68 ~~~~~~C~~C~~~i~~~~~~~~ 89 (176)
+.....|..|++.|..++.-+.
T Consensus 22 kS~Ra~Ck~C~~kI~KgelRig 43 (106)
T 2dmj_A 22 KSGRASCKKCSESIPKDSLRMA 43 (106)
T ss_dssp CSSCCBCSSSCCBCCTTCEEEE
T ss_pred CCCCCcchhhCCccCCCCEEEE
Confidence 3344589999999987776443
No 123
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=55.60 E-value=3.6 Score=23.76 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=13.8
Q ss_pred CcccCHhHHhhC--CCcccccccccccc
Q psy15163 123 GNVYCLRDYATM--LDIPRCHACDELIF 148 (176)
Q Consensus 123 g~~yC~~~y~~~--~~~~~C~~C~~~I~ 148 (176)
|..||..|..+. .. ..|..|+..|.
T Consensus 25 ~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 51 (68)
T 1chc_A 25 LHAFCYVCITRWIRQN-PTCPLCKVPVE 51 (68)
T ss_dssp TEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred CCeeHHHHHHHHHhCc-CcCcCCChhhH
Confidence 344455554321 12 57888888874
No 124
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=55.42 E-value=4.3 Score=26.51 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy15163 73 TCKQCGQEVR 82 (176)
Q Consensus 73 ~C~~C~~~i~ 82 (176)
.|.-|...+.
T Consensus 20 ~C~IC~~~~~ 29 (118)
T 3hct_A 20 ECPICLMALR 29 (118)
T ss_dssp BCTTTCSBCS
T ss_pred CCCcCChhhc
Confidence 4555555443
No 125
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=52.77 E-value=6.6 Score=21.17 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=13.9
Q ss_pred cee-eeCCcccCHhHHhhC
Q psy15163 117 MYF-HYKGNVYCLRDYATM 134 (176)
Q Consensus 117 ~~~-~~~g~~yC~~~y~~~ 134 (176)
.|| ..+-++||..||.++
T Consensus 20 pF~mSVnTQP~CHEC~err 38 (49)
T 2eqg_A 20 PFFMSVNTQPLCHECSERR 38 (49)
T ss_dssp CSBCCTTTTTSCHHHHHHH
T ss_pred CeEEEecCccchHHHHHHH
Confidence 344 478899999999864
No 126
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=52.76 E-value=4.5 Score=23.96 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=14.7
Q ss_pred CcccCHhHHhhCCC---ccccccccccccc
Q psy15163 123 GNVYCLRDYATMLD---IPRCHACDELIFV 149 (176)
Q Consensus 123 g~~yC~~~y~~~~~---~~~C~~C~~~I~~ 149 (176)
|..||..|..+.+. ...|..|++.+..
T Consensus 35 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 35 GNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 44555555433221 1478888887543
No 127
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=51.91 E-value=4.1 Score=22.29 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=4.9
Q ss_pred ccccccccc
Q psy15163 139 RCHACDELI 147 (176)
Q Consensus 139 ~C~~C~~~I 147 (176)
.|..|+..|
T Consensus 45 ~CP~Cr~~~ 53 (55)
T 2ecm_A 45 RCPLCSGPS 53 (55)
T ss_dssp CCTTSCCSS
T ss_pred cCCCCCCcC
Confidence 455555554
No 128
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=51.16 E-value=14 Score=20.04 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=5.9
Q ss_pred cccccccccc
Q psy15163 138 PRCHACDELI 147 (176)
Q Consensus 138 ~~C~~C~~~I 147 (176)
..|..|+..|
T Consensus 44 ~~CP~Cr~~~ 53 (55)
T 1iym_A 44 STCPLCRLTV 53 (55)
T ss_dssp CSCSSSCCCS
T ss_pred CcCcCCCCEe
Confidence 4566666554
No 129
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=50.70 E-value=6.8 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=16.3
Q ss_pred CCCcccccccccccCCCeEEEE
Q psy15163 69 RSGKTCKQCGQEVRSGDLAVYT 90 (176)
Q Consensus 69 ~~~~~C~~C~~~i~~~~~~~~~ 90 (176)
.....|..|++.|..++.-+..
T Consensus 18 S~RA~Ck~Ck~kI~KgeLRiG~ 39 (114)
T 1v9x_A 18 SSRSSCKTCKSVINKENFRLGK 39 (114)
T ss_dssp CSCCBCSSSCCBCCSSSEEEEE
T ss_pred CCCCCchhhCCccCCCCEEEEE
Confidence 3345899999999888765543
No 130
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=50.15 E-value=30 Score=30.48 Aligned_cols=85 Identities=19% Similarity=0.393 Sum_probs=51.7
Q ss_pred CCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh-hCCCcccccccccc
Q psy15163 68 PRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA-TMLDIPRCHACDEL 146 (176)
Q Consensus 68 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~-~~~~~~~C~~C~~~ 146 (176)
++....|..|-+.|.+.. ++.|+-.=-.|+.|+-.+ -+....||=..... ..| +.|..|.+-
T Consensus 103 ~pD~a~C~~Cl~e~~dp~----------~rry~ypF~nCt~CGPR~-----tii~~lPYDR~~TsM~~F--~mC~~C~~E 165 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPT----------NKRYMYPFIVCTNCGPRF-----TIIEDLPYDRENTTMKEF--PMCDFCRSE 165 (772)
T ss_dssp CCCCCCCHHHHHHHSSTT----------STTTTCTTCCCTTSSCCG-----GGCCSSSCCGGGSGGGGS--CCCHHHHHH
T ss_pred CCchhhhHHHHHHhcCCC----------CCccCCccccCCCCCchh-----hhhhcCCCCCCCCcCCCC--CCChhHHHH
Confidence 456679999999997431 555554445788887654 33344444332221 222 566666543
Q ss_pred cccCceEEeCCCccccCCeecccCCccc
Q psy15163 147 IFVNEYTLAENKTFHVKHFCCYECDKII 174 (176)
Q Consensus 147 I~~~~~~~a~~~~~H~~CF~C~~C~~~l 174 (176)
|..-.++.||..=-.|..|+-.|
T Consensus 166 -----Y~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 166 -----YEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp -----HHCSSSTTTTCTTCCCTTTSCCE
T ss_pred -----hCCCCCCCCcCCCCCCccCCceE
Confidence 33346788888777788887654
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=49.81 E-value=8 Score=28.84 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=36.1
Q ss_pred CccCcccccCccccCCCceeeeCCcccCHhHHhhCC---CcccccccccccccCceE
Q psy15163 100 HPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML---DIPRCHACDELIFVNEYT 153 (176)
Q Consensus 100 H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~---~~~~C~~C~~~I~~~~~~ 153 (176)
-+.-|.|..|...+.+ .+....|..||..|-.+.+ + ..|..|+.++....++
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQLI 259 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGGGCE
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCchhcCc
Confidence 3456888888887765 4555678889988865432 3 3599999998654443
No 132
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=49.71 E-value=17 Score=21.36 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=16.8
Q ss_pred CCcc-cCHhHHhhCCCccccccccccccc
Q psy15163 122 KGNV-YCLRDYATMLDIPRCHACDELIFV 149 (176)
Q Consensus 122 ~g~~-yC~~~y~~~~~~~~C~~C~~~I~~ 149 (176)
=|.. +|..|..+. ..|..|...|..
T Consensus 42 CgH~~~C~~C~~~~---~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 42 CGHLVTCKQCAEAV---DKCPMCYTVITF 67 (74)
T ss_dssp TCCBCCCHHHHTTC---SBCTTTCCBCSE
T ss_pred CCChhHHHHhhhcC---ccCCCcCcCccC
Confidence 3444 677776543 488999988853
No 133
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=49.56 E-value=5.4 Score=27.65 Aligned_cols=43 Identities=19% Similarity=0.472 Sum_probs=22.2
Q ss_pred cccccCccccCCCceee-eCCcccCHhHHhhCC---Ccccccccccccc
Q psy15163 104 FVCSTCDELLVDLMYFH-YKGNVYCLRDYATML---DIPRCHACDELIF 148 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~---~~~~C~~C~~~I~ 148 (176)
+.|..|...+.. .... .=|..||..|..+.+ . ..|..|+..|.
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGN-KECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTC-CBCTTTCCBCC
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCc-CCCCCCCCcCC
Confidence 444455444433 1222 345556666654332 2 56888888774
No 134
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.15 E-value=13 Score=23.35 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=15.4
Q ss_pred ccCHhHHh--hCCCccccccccccc
Q psy15163 125 VYCLRDYA--TMLDIPRCHACDELI 147 (176)
Q Consensus 125 ~yC~~~y~--~~~~~~~C~~C~~~I 147 (176)
+.|+.||. +.-+...|.+|+..-
T Consensus 44 PvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 44 PACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred hhhHHHHHHHHhccCccccccCCcc
Confidence 56888884 333336888888655
No 135
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=49.03 E-value=5.5 Score=26.15 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=16.8
Q ss_pred eCCcccCHhHHhhCC--Cccccccccccccc
Q psy15163 121 YKGNVYCLRDYATML--DIPRCHACDELIFV 149 (176)
Q Consensus 121 ~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~ 149 (176)
.=|..||..|..+.+ ....|..|+..|..
T Consensus 69 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 334556666654322 11488889888854
No 136
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.62 E-value=6.4 Score=23.83 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=9.5
Q ss_pred ccccccccccccC
Q psy15163 138 PRCHACDELIFVN 150 (176)
Q Consensus 138 ~~C~~C~~~I~~~ 150 (176)
..|..|+..+...
T Consensus 57 ~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 57 VRCPFCSKITRIT 69 (88)
T ss_dssp BCCTTTCCCBCCS
T ss_pred cCCCCCCCcccch
Confidence 5788888887543
No 137
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.48 E-value=5.2 Score=23.53 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=20.9
Q ss_pred ccccccccccCCCeEEEEe-ccCCCcccCccC
Q psy15163 73 TCKQCGQEVRSGDLAVYTE-KLGDQVLWHPQC 103 (176)
Q Consensus 73 ~C~~C~~~i~~~~~~~~~~-~~~~~~~~H~~C 103 (176)
.|..|++++.+++.++.-+ .. ...||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C--~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASC--QKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTT--CCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCc--cccCchhc
Confidence 7999999998777777764 33 34567665
No 138
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=48.27 E-value=19 Score=25.10 Aligned_cols=59 Identities=22% Similarity=0.476 Sum_probs=33.1
Q ss_pred cccCCCCCCccCCCCCcccccccccccCCCeEEEEeccC---CCcccCccCcccccCccccCC
Q psy15163 56 VTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLG---DQVLWHPQCFVCSTCDELLVD 115 (176)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~---~~~~~H~~Cf~C~~C~~~l~~ 115 (176)
.+|..|.....+-.....|..|+..+.+.... .....+ .+...|..=+.|..|...|-.
T Consensus 56 ~~C~~CH~g~~af~~~~~C~~CH~~~~~~~i~-~~~~~~~V~F~H~~H~~~~~C~~CH~~v~~ 117 (158)
T 3oue_A 56 KSCGACHNGKDAFSSASDCGKCHPGLKPAKLT-YKTSVGEAYFDHDIHLSMFKCADCHTKVFK 117 (158)
T ss_dssp CGGGGTBSSSSBCCTTSCHHHHCGGGCCCCEE-EEETTEEEEECHHHHHTTCCGGGTBTTTBC
T ss_pred CchhhhcCCcccCChhhhchhhhhcccccceE-eecCCCCccCChhHhCCCCChhhhccchhh
Confidence 56888876432222234799998755433222 211110 033457666899999988733
No 139
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=48.21 E-value=6.4 Score=26.07 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=15.0
Q ss_pred CCcccccccccccCCCeEEE
Q psy15163 70 SGKTCKQCGQEVRSGDLAVY 89 (176)
Q Consensus 70 ~~~~C~~C~~~i~~~~~~~~ 89 (176)
+...|..|++.|..++.-+.
T Consensus 14 gRA~Ck~C~~kI~KgeLRiG 33 (117)
T 1uw0_A 14 GTAGCKKCKEKIVKGVCRIG 33 (117)
T ss_dssp SCEECTTSSCEECTTCEEEE
T ss_pred CCccchhhCcccCCCCeEEE
Confidence 34589999999987776443
No 140
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=47.86 E-value=2.4 Score=24.71 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=16.7
Q ss_pred CCcccCHhHHhhCC--CcccccccccccccCc
Q psy15163 122 KGNVYCLRDYATML--DIPRCHACDELIFVNE 151 (176)
Q Consensus 122 ~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~~ 151 (176)
=|..||..|..+.+ . ..|..|+..|....
T Consensus 35 CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 35 CGHVFCSQCLRDSLKNA-NTCPTCRKKINHKR 65 (71)
T ss_dssp TSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCS
T ss_pred CCChHhHHHHHHHHHcC-CCCCCCCCccChhh
Confidence 34455665554321 2 57888888886443
No 141
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=47.37 E-value=9.1 Score=23.46 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=27.1
Q ss_pred CcccccCccccCCCceeee-CCcccCHhHHhhCC---Cccccccccccc
Q psy15163 103 CFVCSTCDELLVDLMYFHY-KGNVYCLRDYATML---DIPRCHACDELI 147 (176)
Q Consensus 103 Cf~C~~C~~~l~~~~~~~~-~g~~yC~~~y~~~~---~~~~C~~C~~~I 147 (176)
-+.|..|...+.. ..... =|..||..|..+.+ +...|..|+..+
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3666666666643 23333 36778887765432 114899999886
No 142
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=47.22 E-value=5 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.414 Sum_probs=24.4
Q ss_pred ccccccccccccCceEEeCCCccccCCe----------ecccCCccc
Q psy15163 138 PRCHACDELIFVNEYTLAENKTFHVKHF----------CCYECDKII 174 (176)
Q Consensus 138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF----------~C~~C~~~l 174 (176)
+.|..|...|..+..=.--+..||..|+ .|..|+...
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 6888888888654211113677888887 688887654
No 143
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.12 E-value=6 Score=23.33 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=25.2
Q ss_pred cCcccccCccccCCCc--eeeeCCcccCHhHHhhCC--Ccccccccccccc
Q psy15163 102 QCFVCSTCDELLVDLM--YFHYKGNVYCLRDYATML--DIPRCHACDELIF 148 (176)
Q Consensus 102 ~Cf~C~~C~~~l~~~~--~~~~~g~~yC~~~y~~~~--~~~~C~~C~~~I~ 148 (176)
+-..|..|...+.... ....=+..||..|..+.+ . ..|..|...|.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCC
Confidence 3456777776664432 222345666666654321 2 46777776664
No 144
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=45.91 E-value=6.4 Score=23.34 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=10.8
Q ss_pred cccccccccccCCCeE
Q psy15163 72 KTCKQCGQEVRSGDLA 87 (176)
Q Consensus 72 ~~C~~C~~~i~~~~~~ 87 (176)
..|.-|...+.....+
T Consensus 16 ~~C~IC~~~~~~~~~~ 31 (78)
T 2ect_A 16 LECPVCKEDYALGESV 31 (78)
T ss_dssp CCCTTTTSCCCTTSCE
T ss_pred CCCeeCCccccCCCCE
Confidence 4788888877644433
No 145
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=45.70 E-value=8.6 Score=16.65 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=6.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 45667766654
No 146
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=45.38 E-value=8.2 Score=16.89 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.2
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 56777776654
No 147
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.37 E-value=13 Score=22.60 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=11.9
Q ss_pred cccccccccccCceEE--eCCCccccCCe
Q psy15163 139 RCHACDELIFVNEYTL--AENKTFHVKHF 165 (176)
Q Consensus 139 ~C~~C~~~I~~~~~~~--a~~~~~H~~CF 165 (176)
.|..|++.-.++.++. .=++.||..|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl 56 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCL 56 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSS
T ss_pred CCcCcCCcCCCCCEEEcCCCCcccccccc
Confidence 3455554433333332 22355665554
No 148
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.19 E-value=3.8 Score=25.98 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=7.7
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 80 ~~~C~~C~k~f~ 91 (115)
T 2dmi_A 80 VLKCMYCGHSFE 91 (115)
T ss_dssp SCBCSSSCCBCS
T ss_pred ceECCCCCCccC
Confidence 366777776654
No 149
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=44.85 E-value=8.1 Score=25.34 Aligned_cols=19 Identities=26% Similarity=0.723 Sum_probs=14.3
Q ss_pred CCcccccccccccCCCeEE
Q psy15163 70 SGKTCKQCGQEVRSGDLAV 88 (176)
Q Consensus 70 ~~~~C~~C~~~i~~~~~~~ 88 (176)
....|..|++.|..++.-+
T Consensus 18 ~Ra~Ck~C~~kI~Kg~lRi 36 (111)
T 3odc_A 18 NRSTCKGCMEKIEKGQVRL 36 (111)
T ss_dssp SCCBCTTTCCBCCTTCEEE
T ss_pred CCccccccCCCccCCceEE
Confidence 3458999999998776644
No 150
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=44.84 E-value=4.9 Score=25.78 Aligned_cols=10 Identities=30% Similarity=0.820 Sum_probs=6.5
Q ss_pred cccccccccc
Q psy15163 73 TCKQCGQEVR 82 (176)
Q Consensus 73 ~C~~C~~~i~ 82 (176)
.|..|..++.
T Consensus 34 ~CP~Cq~eL~ 43 (101)
T 2jne_A 34 HCPQCQHVLD 43 (101)
T ss_dssp BCSSSCSBEE
T ss_pred cCccCCCcce
Confidence 6777766553
No 151
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=44.39 E-value=40 Score=21.80 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=22.8
Q ss_pred ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhH
Q psy15163 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130 (176)
Q Consensus 73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~ 130 (176)
.|..|+. .++++ .-++.+=.+.||..|.. |.. ...|.-||..|
T Consensus 17 ~C~~C~~---~G~ll-~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c 59 (107)
T 4gne_A 17 YCFQCGD---GGELV-MCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH 59 (107)
T ss_dssp SCTTTCC---CSEEE-ECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG
T ss_pred CCCcCCC---CCcEe-EECCCCCCcccccccCc-------CCc----CCCCCEECCCC
Confidence 6777773 24444 33210003578887763 322 23567788766
No 152
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=44.37 E-value=8.1 Score=26.52 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=24.7
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhhCC--CcccccccccccccC
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVN 150 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~ 150 (176)
+.|..|...+.. .....=|..||..|..+.+ ....|..|...|...
T Consensus 79 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 445555554433 2223445566666654332 103788888888543
No 153
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.20 E-value=17 Score=19.75 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=4.8
Q ss_pred cccccccccc
Q psy15163 73 TCKQCGQEVR 82 (176)
Q Consensus 73 ~C~~C~~~i~ 82 (176)
.|.-|...+.
T Consensus 17 ~C~IC~~~~~ 26 (58)
T 2ecj_A 17 SCSVCLEYLK 26 (58)
T ss_dssp BCSSSCCBCS
T ss_pred CCccCCcccC
Confidence 4555544443
No 154
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.49 E-value=3.5 Score=23.71 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=6.7
Q ss_pred cccccccccc
Q psy15163 138 PRCHACDELI 147 (176)
Q Consensus 138 ~~C~~C~~~I 147 (176)
..|..|+..|
T Consensus 57 ~~CP~Cr~~~ 66 (69)
T 2ea6_A 57 NTCPTCRKKI 66 (69)
T ss_dssp SSCTTTCCCC
T ss_pred CCCCCCCCcc
Confidence 4677777666
No 155
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=42.25 E-value=10 Score=16.65 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=6.9
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 56777766654
No 156
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=41.86 E-value=7.4 Score=24.04 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=27.6
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeeccc
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYE 169 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~ 169 (176)
+.|..|+..|.++-|..--..+ .+ ..|.-|.+.-.... ......|.|.-=+|.-
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~---------~H-kFCFpCsr~sIk~q--~~~~EvyCPSG~kCpL 69 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVP---------SH-KFCFPCSRESIKAQ--GATGEVYCPSGEKCPL 69 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCS---------SC-EECHHHHHHHHHHH--HSSSCCCCTTSSCCBC
T ss_pred eEeecchhhhccCceeeCCCcc---------CC-eeeccccHHHHHhc--CCCCcEECCCCCcccc
Confidence 6788888888776555422221 12 34444544322211 1345666666555543
No 157
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=41.50 E-value=14 Score=26.35 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.5
Q ss_pred ccCcccccCccccCCCceeeeCCcccCHhHHhhC---CCcccccccccccccCceE
Q psy15163 101 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM---LDIPRCHACDELIFVNEYT 153 (176)
Q Consensus 101 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~---~~~~~C~~C~~~I~~~~~~ 153 (176)
++-|.|..|...+.+ .+....|..||..|-.+. .+ ..|..|+.++....++
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQDQLI 157 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCE
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCChhhCc
Confidence 566888888887765 566678899998776443 34 4699999988654443
No 158
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=41.29 E-value=10 Score=16.57 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=7.2
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 56777776654
No 159
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.92 E-value=6.8 Score=23.19 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=11.4
Q ss_pred eeCCcccCHhHHhhC
Q psy15163 120 HYKGNVYCLRDYATM 134 (176)
Q Consensus 120 ~~~g~~yC~~~y~~~ 134 (176)
-=++.+||..||.+.
T Consensus 24 gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 24 GCDGDLYCARCFREG 38 (67)
T ss_dssp TTTSEEECSSHHHHH
T ss_pred CCCCceehHHHHHHH
Confidence 346789999999764
No 160
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=40.22 E-value=11 Score=16.53 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=7.1
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 56777776654
No 161
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=40.16 E-value=9.8 Score=16.74 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=7.2
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 56777776554
No 162
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=39.67 E-value=11 Score=16.68 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=6.9
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 56777766653
No 163
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.07 E-value=12 Score=16.35 Aligned_cols=11 Identities=45% Similarity=0.875 Sum_probs=6.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 56677766553
No 164
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=38.40 E-value=8.7 Score=26.08 Aligned_cols=43 Identities=28% Similarity=0.560 Sum_probs=22.7
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhhCCCc--cccccccccc
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDI--PRCHACDELI 147 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~--~~C~~C~~~I 147 (176)
|.|..|...+.. .+...=|..||..|..+.+.. ..|..|...|
T Consensus 32 ~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 455555555433 223344556666665543211 4788887765
No 165
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=44.02 E-value=6.9 Score=16.98 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=5.8
Q ss_pred eecccCCccc
Q psy15163 165 FCCYECDKII 174 (176)
Q Consensus 165 F~C~~C~~~l 174 (176)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 4566666554
No 166
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.35 E-value=29 Score=20.09 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=14.9
Q ss_pred cCHhHHhhCCCccccccccccccc
Q psy15163 126 YCLRDYATMLDIPRCHACDELIFV 149 (176)
Q Consensus 126 yC~~~y~~~~~~~~C~~C~~~I~~ 149 (176)
+|..|.... .+|..|...|..
T Consensus 38 ~C~~C~~~~---~~CP~CR~~i~~ 58 (68)
T 2ea5_A 38 LCDGCVKYF---QQCPMCRQFVQE 58 (68)
T ss_dssp SCTTHHHHC---SSCTTTCCCCCC
T ss_pred hhHHHHhcC---CCCCCCCcchhc
Confidence 566666542 589999999953
No 167
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.74 E-value=13 Score=16.15 Aligned_cols=10 Identities=40% Similarity=0.806 Sum_probs=5.7
Q ss_pred eecccCCccc
Q psy15163 165 FCCYECDKII 174 (176)
Q Consensus 165 F~C~~C~~~l 174 (176)
|.|..|++.+
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 4566666554
No 168
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.62 E-value=13 Score=16.27 Aligned_cols=11 Identities=18% Similarity=0.718 Sum_probs=6.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 56677766553
No 169
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.50 E-value=14 Score=21.42 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=8.1
Q ss_pred ccccccccccc
Q psy15163 138 PRCHACDELIF 148 (176)
Q Consensus 138 ~~C~~C~~~I~ 148 (176)
..|..|+..|.
T Consensus 53 ~~CP~Cr~~~~ 63 (74)
T 2ep4_A 53 KVCPLCNMPVL 63 (74)
T ss_dssp SBCTTTCCBCS
T ss_pred CcCCCcCcccc
Confidence 47888888774
No 170
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=36.33 E-value=38 Score=20.24 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=24.0
Q ss_pred ccccCccccCCCceeeeCCcc-cCHhHHhhCCCccccccccccccc
Q psy15163 105 VCSTCDELLVDLMYFHYKGNV-YCLRDYATMLDIPRCHACDELIFV 149 (176)
Q Consensus 105 ~C~~C~~~l~~~~~~~~~g~~-yC~~~y~~~~~~~~C~~C~~~I~~ 149 (176)
.|..|...+.. ..+..=|.. +|..|..+. ..|..|...|..
T Consensus 20 ~C~IC~~~~~~-~v~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEIN-STFCPCGHTVCCESCAAQL---QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCC-EEEETTCBCCBCHHHHTTC---SBCTTTCCBCCE
T ss_pred EeEEeCcccCc-EEEECCCCHHHHHHHHHhc---CcCCCCCchhhC
Confidence 34444444433 223344455 677777543 489999999854
No 171
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=36.31 E-value=14 Score=16.20 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=6.6
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 45666666553
No 172
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=36.27 E-value=13 Score=24.66 Aligned_cols=19 Identities=21% Similarity=0.674 Sum_probs=14.5
Q ss_pred CCcccccccccccCCCeEE
Q psy15163 70 SGKTCKQCGQEVRSGDLAV 88 (176)
Q Consensus 70 ~~~~C~~C~~~i~~~~~~~ 88 (176)
....|..|++.|..++.-+
T Consensus 37 ~RA~Ck~C~~kI~KgeLRi 55 (116)
T 3od8_A 37 GRASCKKCSESIPKDSLRM 55 (116)
T ss_dssp SCCBCTTTCCBCCTTSEEE
T ss_pred CCccCcccCCccCCCCEEE
Confidence 3458999999998777654
No 173
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.49 E-value=14 Score=22.99 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=30.7
Q ss_pred ccccccccccC-CCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163 73 TCKQCGQEVRS-GDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133 (176)
Q Consensus 73 ~C~~C~~~i~~-~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~ 133 (176)
.|..|+..-.. ...++.-+.. +..||..|.. -+|........++..||..|-..
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C--~~~yH~~Cl~-----Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQEC--HNLYHQDCHK-----PQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSS--CCEEETTTSS-----SCCCHHHHHCTTCCCCCHHHHHH
T ss_pred cCCCCCCCCCCCCCceEECCCC--CCeEcCccCC-----CcccccccCCCCCCeeCccccch
Confidence 78888876431 1234444434 5689999864 23321111235677889888654
No 174
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=34.86 E-value=14 Score=18.65 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=8.6
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.|.
T Consensus 8 p~~C~~CgK~F~ 19 (36)
T 1fv5_A 8 RFMCLPCGIAFS 19 (36)
T ss_dssp CCEETTTTEECS
T ss_pred CeECCCCCCccC
Confidence 477888877765
No 175
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.66 E-value=13 Score=20.81 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy15163 73 TCKQCGQEVR 82 (176)
Q Consensus 73 ~C~~C~~~i~ 82 (176)
.|.-|...+.
T Consensus 22 ~C~IC~~~~~ 31 (63)
T 2ysj_A 22 ICPICLDILQ 31 (63)
T ss_dssp BCTTTCSBCS
T ss_pred CCCcCCchhC
Confidence 4555555443
No 176
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.43 E-value=15 Score=17.08 Aligned_cols=12 Identities=25% Similarity=0.550 Sum_probs=8.1
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 367777777654
No 177
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=33.99 E-value=12 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=19.7
Q ss_pred cCcccccCccccCCCceeeeCCcccCHhHHhhCC
Q psy15163 102 QCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML 135 (176)
Q Consensus 102 ~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~ 135 (176)
.=.+|..|+...... |+.+|..|+.+.+
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~~~~ 189 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQGGSP 189 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHTTCC
T ss_pred CCEECCcCCCChhhC------CCcCCccccCCCC
Confidence 335688887766442 8899999987654
No 178
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.40 E-value=23 Score=23.92 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=15.9
Q ss_pred CCCcccccccccccCCCeEEEE
Q psy15163 69 RSGKTCKQCGQEVRSGDLAVYT 90 (176)
Q Consensus 69 ~~~~~C~~C~~~i~~~~~~~~~ 90 (176)
.....|..|++.|..+++-+..
T Consensus 25 SgRA~CK~C~~kI~KgeLRIG~ 46 (134)
T 2cs2_A 25 SNRSTCKGCMEKIEKGQVRLSK 46 (134)
T ss_dssp SSCCBCSSSCCBCCTTSEEEEE
T ss_pred CCCccchhcCCcccCCCeEEEE
Confidence 3445899999999877765433
No 179
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=33.37 E-value=16 Score=17.06 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=7.5
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 67777777654
No 180
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=32.74 E-value=16 Score=17.30 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=7.8
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 11 ~~~C~~C~k~f~ 22 (37)
T 1p7a_A 11 PFQCPDCDRSFS 22 (37)
T ss_dssp SBCCTTTCCCBS
T ss_pred CccCCCCCcccC
Confidence 366777776654
No 181
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.05 E-value=18 Score=16.92 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=7.3
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 66777776654
No 182
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=31.46 E-value=10 Score=28.15 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=23.2
Q ss_pred CCCcccccccccccCCCeEEEEe---ccCCC---cccCccCccc
Q psy15163 69 RSGKTCKQCGQEVRSGDLAVYTE---KLGDQ---VLWHPQCFVC 106 (176)
Q Consensus 69 ~~~~~C~~C~~~i~~~~~~~~~~---~~~~~---~~~H~~Cf~C 106 (176)
.....|..|++.|..++.-+... ....+ ..||..||.=
T Consensus 37 S~RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~~ 80 (223)
T 4av1_A 37 SGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWK 80 (223)
T ss_dssp STTCBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHTT
T ss_pred CCCccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhhh
Confidence 34458999999998777644321 11111 3568888763
No 183
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.16 E-value=23 Score=21.95 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=32.0
Q ss_pred cCcccccCccccCCCceee-eCCcccCHhHHhhCCC-------cccccc--cccc-cccCce
Q psy15163 102 QCFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD-------IPRCHA--CDEL-IFVNEY 152 (176)
Q Consensus 102 ~Cf~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~~-------~~~C~~--C~~~-I~~~~~ 152 (176)
.-|.|..|...+.+ .+.. ..|..||+.|-.+.+. ...|.. |... +....+
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 44788888877765 5555 4889999877644332 147888 7755 543333
No 184
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.00 E-value=19 Score=16.93 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=7.6
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 67777777654
No 185
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=30.90 E-value=20 Score=20.42 Aligned_cols=49 Identities=6% Similarity=0.074 Sum_probs=34.7
Q ss_pred cccccCccccCCCceee-eCCcccCHhHHhhCCCc-ccccccccccccCceE
Q psy15163 104 FVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLDI-PRCHACDELIFVNEYT 153 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~~~-~~C~~C~~~I~~~~~~ 153 (176)
|.|..+...+.+ .+.. ..|..|++.+-.+.+.. .+|...++++...+++
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 677877777765 4555 78999998776554321 4688888888766665
No 186
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.63 E-value=18 Score=16.82 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=6.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 55667766654
No 187
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=36.46 E-value=11 Score=16.72 Aligned_cols=10 Identities=20% Similarity=1.016 Sum_probs=5.7
Q ss_pred eecccCCccc
Q psy15163 165 FCCYECDKII 174 (176)
Q Consensus 165 F~C~~C~~~l 174 (176)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (30)
T 2lvr_A 4 YVCIHCQRQF 13 (30)
Confidence 4566666554
No 188
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=29.74 E-value=19 Score=20.50 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=8.9
Q ss_pred cccccccccccCCC
Q psy15163 72 KTCKQCGQEVRSGD 85 (176)
Q Consensus 72 ~~C~~C~~~i~~~~ 85 (176)
..|.-|...+..++
T Consensus 15 ~~C~IC~~~~~~~~ 28 (69)
T 2kiz_A 15 EKCTICLSILEEGE 28 (69)
T ss_dssp CSBTTTTBCCCSSS
T ss_pred CCCeeCCccccCCC
Confidence 46777877665433
No 189
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.84 E-value=11 Score=16.64 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=5.7
Q ss_pred eecccCCccc
Q psy15163 165 FCCYECDKII 174 (176)
Q Consensus 165 F~C~~C~~~l 174 (176)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 4566666554
No 190
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.60 E-value=20 Score=16.99 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
-|.|..|++.+.
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elp_A 9 AMKCPYCDFYFM 20 (37)
T ss_dssp CEECSSSSCEEC
T ss_pred CeECCCCChhhc
Confidence 477888877654
No 191
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.30 E-value=17 Score=17.46 Aligned_cols=11 Identities=18% Similarity=0.652 Sum_probs=7.5
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elm_A 10 YYCSQCHYSSI 20 (37)
T ss_dssp EECSSSSCEEE
T ss_pred eECCCCCcccC
Confidence 67777776653
No 192
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.18 E-value=20 Score=16.84 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=7.2
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2els_A 10 FTCEYCNKVFK 20 (36)
T ss_dssp EECTTTCCEES
T ss_pred EECCCCCceeC
Confidence 66777776653
No 193
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.74 E-value=21 Score=16.75 Aligned_cols=11 Identities=18% Similarity=0.739 Sum_probs=7.2
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elv_A 10 YDCHICERKFK 20 (36)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 66777776553
No 194
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=28.62 E-value=22 Score=17.14 Aligned_cols=11 Identities=36% Similarity=1.083 Sum_probs=7.4
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|..++.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 56777776654
No 195
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.58 E-value=21 Score=16.61 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=7.9
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 367777776654
No 196
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.49 E-value=20 Score=16.95 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=7.8
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elo_A 9 SYSCPVCEKSFS 20 (37)
T ss_dssp CCEETTTTEECS
T ss_pred CcCCCCCCCccC
Confidence 367777776654
No 197
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.69 E-value=40 Score=19.15 Aligned_cols=51 Identities=12% Similarity=0.294 Sum_probs=27.8
Q ss_pred ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133 (176)
Q Consensus 73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~ 133 (176)
.|..|+++..++..++.-+.. ...||..|..=. ... ....+..+|..|-.+
T Consensus 8 ~C~~C~~~~~~~~~mI~Cd~C--~~WfH~~Cvgl~-------~~~-~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 8 QCGACGESYAADEFWICCDLC--EMWFHGKCVKIT-------PAR-AEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCSSSCCCCCSSSCEEECSSS--CCEEETTTTTCC-------TTG-GGGCSSCCCHHHHTT
T ss_pred CCCCCCCccCCCCCEEEccCC--CCCCCccccCcC-------hhH-hcCCCcEECCCCcCc
Confidence 688888876544556565433 335687775311 111 111246778877643
No 198
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=26.67 E-value=23 Score=17.05 Aligned_cols=12 Identities=17% Similarity=0.636 Sum_probs=8.0
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
-|.|..|++.+.
T Consensus 6 ~~~C~~C~k~f~ 17 (39)
T 1njq_A 6 SYTCSFCKREFR 17 (39)
T ss_dssp SEECTTTCCEES
T ss_pred ceECCCCCcccC
Confidence 467777777654
No 199
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.10 E-value=71 Score=18.33 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=20.7
Q ss_pred ccCccCcccccCccc-cCCCceee--eCCcccCHhHHhhC
Q psy15163 98 LWHPQCFVCSTCDEL-LVDLMYFH--YKGNVYCLRDYATM 134 (176)
Q Consensus 98 ~~H~~Cf~C~~C~~~-l~~~~~~~--~~g~~yC~~~y~~~ 134 (176)
.+|. ..|..|+.. +.+..|.= -.+.-+|..||...
T Consensus 8 v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 8 VFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred ceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 4565 677777754 65543321 23455788888653
No 200
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.31 E-value=27 Score=16.98 Aligned_cols=11 Identities=27% Similarity=1.005 Sum_probs=7.5
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 11 ~~C~~C~k~f~ 21 (42)
T 2yte_A 11 YSCAECKETFS 21 (42)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCCccC
Confidence 66777776654
No 201
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=25.23 E-value=19 Score=17.12 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=8.1
Q ss_pred CCeecccCCccc
Q psy15163 163 KHFCCYECDKII 174 (176)
Q Consensus 163 ~CF~C~~C~~~l 174 (176)
.|..|..|...|
T Consensus 6 sclvcaacsvel 17 (31)
T 2lbz_A 6 SCLVCAACSVEL 17 (31)
T ss_dssp GGGGGGGCCSCS
T ss_pred HHHHHHHhHHHH
Confidence 467777777654
No 202
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.00 E-value=26 Score=17.46 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.|.
T Consensus 12 ~~~C~~C~k~F~ 23 (44)
T 2epv_A 12 PYECNECGKAFI 23 (44)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCcccC
Confidence 367788877654
No 203
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=24.88 E-value=27 Score=17.03 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=8.2
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 11 ~~~C~~C~k~f~ 22 (42)
T 2epc_A 11 PYLCGQCGKSFT 22 (42)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCcccC
Confidence 367777777654
No 204
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=24.51 E-value=12 Score=17.18 Aligned_cols=9 Identities=44% Similarity=1.017 Sum_probs=5.3
Q ss_pred eecccCCcc
Q psy15163 165 FCCYECDKI 173 (176)
Q Consensus 165 F~C~~C~~~ 173 (176)
|.|..|.++
T Consensus 6 ffcetcskp 14 (26)
T 1loi_A 6 FFCETCSKP 14 (26)
T ss_dssp HHHHTSSCT
T ss_pred HHHHhcCCc
Confidence 456666654
No 205
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=78 Score=19.13 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=5.6
Q ss_pred ccccccccc
Q psy15163 73 TCKQCGQEV 81 (176)
Q Consensus 73 ~C~~C~~~i 81 (176)
.|++|.+++
T Consensus 27 ~CarC~~~L 35 (76)
T 2csz_A 27 TCARCQESL 35 (76)
T ss_dssp BCSSSCCBC
T ss_pred chhhhCccc
Confidence 566666655
No 206
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=24.14 E-value=28 Score=16.98 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
-|.|..|++.+.
T Consensus 10 ~~~C~~C~k~f~ 21 (42)
T 2el5_A 10 PYECSECGKAFN 21 (42)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCcChhhC
Confidence 477888877654
No 207
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.91 E-value=28 Score=16.99 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=8.2
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 11 ~~~C~~C~k~f~ 22 (42)
T 2en2_A 11 PYKCETCGARFV 22 (42)
T ss_dssp SEECTTTCCEES
T ss_pred CEeCCCcChhhC
Confidence 377778877654
No 208
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.48 E-value=31 Score=17.29 Aligned_cols=12 Identities=50% Similarity=1.093 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2emg_A 12 PFICSECGKVFT 23 (46)
T ss_dssp SCBCTTTCCBCS
T ss_pred CEECCccCcccC
Confidence 467777777664
No 209
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.29 E-value=30 Score=17.13 Aligned_cols=12 Identities=17% Similarity=0.733 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (44)
T 2emb_A 12 RYECSKCQATFN 23 (44)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCCCCccC
Confidence 377888877654
No 210
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.27 E-value=32 Score=17.22 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=8.1
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2enf_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SCBCSSSCCBCS
T ss_pred CeECCCCCcccC
Confidence 367777777664
No 211
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.27 E-value=30 Score=17.12 Aligned_cols=11 Identities=45% Similarity=1.225 Sum_probs=7.9
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2yu5_A 13 FKCSKCDRVFT 23 (44)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCchhC
Confidence 77888877654
No 212
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.10 E-value=32 Score=17.29 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=7.6
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eon_A 13 YKCQVCGKAFR 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred cCCCCCCcccC
Confidence 67777777664
No 213
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.05 E-value=30 Score=16.80 Aligned_cols=11 Identities=27% Similarity=0.902 Sum_probs=7.2
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2ytb_A 12 YRCDQCGKAFS 22 (42)
T ss_dssp BCCTTTTCCBS
T ss_pred eeCCCccchhC
Confidence 66777776654
No 214
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.99 E-value=28 Score=17.13 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=7.3
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2en7_A 13 YVCNECGKAFR 23 (44)
T ss_dssp SCCTTTCCCCS
T ss_pred eECCCCCCccC
Confidence 66777776654
No 215
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.77 E-value=31 Score=16.73 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=8.0
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 10 ~~~C~~C~k~f~ 21 (41)
T 2ept_A 10 VYECQECGKSFR 21 (41)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCCcC
Confidence 367777777654
No 216
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.76 E-value=31 Score=16.81 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=7.1
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2eos_A 12 YPCEICGTRFR 22 (42)
T ss_dssp BCCSSSCCCBS
T ss_pred EECCCCCCccC
Confidence 56777776654
No 217
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.69 E-value=49 Score=25.16 Aligned_cols=50 Identities=10% Similarity=0.239 Sum_probs=32.8
Q ss_pred CcccccCccccCCCceee-eCCcccCHhHHhhCCCc---ccccc--cccccccCceE
Q psy15163 103 CFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLDI---PRCHA--CDELIFVNEYT 153 (176)
Q Consensus 103 Cf~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~~~---~~C~~--C~~~I~~~~~~ 153 (176)
=|+|..|...+.. .+.. .=|..||+.|..+.+.. ..|.. |++.+....++
T Consensus 181 el~CPIcl~~f~D-PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 181 ELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CSBCTTTSSBCSS-EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred eeECcCccCcccC-CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 3777777777754 3332 45778888887655431 37988 99888655543
No 218
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.57 E-value=33 Score=17.17 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
-|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em6_A 12 CYKCDVCGKEFS 23 (46)
T ss_dssp CCBCSSSCCBCS
T ss_pred CeECCCCCcccC
Confidence 367777777664
No 219
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=22.39 E-value=31 Score=17.84 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=7.4
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.|.
T Consensus 8 ~~C~~C~k~F~ 18 (48)
T 3iuf_A 8 YACDICGKRYK 18 (48)
T ss_dssp EECTTTCCEES
T ss_pred EECCCcCcccC
Confidence 66777776654
No 220
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.38 E-value=31 Score=17.20 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yts_A 12 PYICNECGKSFI 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CEECCCCChhhC
Confidence 477888877664
No 221
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.33 E-value=32 Score=16.91 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=8.2
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (44)
T 2eof_A 12 PYECNECQKAFN 23 (44)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCCCcccC
Confidence 377777777654
No 222
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.28 E-value=32 Score=17.18 Aligned_cols=12 Identities=42% Similarity=0.899 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytf_A 12 PFECSECQKAFN 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CcCCCCCCcccC
Confidence 477888877664
No 223
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=22.26 E-value=55 Score=26.30 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=29.9
Q ss_pred cccccCccccCCCceeeeCCcccCHhHHhhC---CCcccccccccccccCce
Q psy15163 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATM---LDIPRCHACDELIFVNEY 152 (176)
Q Consensus 104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~---~~~~~C~~C~~~I~~~~~ 152 (176)
..|..|-..+.. .....=|..+|..|..+. .. ..|..|...|.....
T Consensus 333 ~~C~ICle~~~~-pv~lpCGH~FC~~Ci~~wl~~~~-~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 333 QLCKICAENDKD-VKIEPCGHLMCTSCLTSWQESEG-QGCPFCRCEIKGTEP 382 (389)
T ss_dssp SBCTTTSSSBCC-EEEETTCCEECHHHHHHHHHHTC-SBCTTTCCBCCEEEE
T ss_pred CCCCccCcCCCC-eEEeCCCChhhHHHHHHHHhcCC-CCCCCCCCccCCcee
Confidence 456666555543 334456677788887532 23 789999999965433
No 224
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.15 E-value=32 Score=17.21 Aligned_cols=12 Identities=42% Similarity=0.991 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emi_A 12 HYECSECGKAFI 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CCCCCCCCcccC
Confidence 477888877654
No 225
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.12 E-value=34 Score=17.15 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
-|.|..|++.|.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2enh_A 12 PYECDVCRKAFS 23 (46)
T ss_dssp SCBCTTTCCBCS
T ss_pred CcCCCCcCchhC
Confidence 477778877664
No 226
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.08 E-value=32 Score=17.20 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ep3_A 12 PYRCAECGKAFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 477888877664
No 227
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.07 E-value=30 Score=17.07 Aligned_cols=12 Identities=33% Similarity=0.999 Sum_probs=8.1
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (44)
T 2eoj_A 12 PYECCECGKVFS 23 (44)
T ss_dssp SCEETTTTEECS
T ss_pred CeeCCCCCCccC
Confidence 367777777654
No 228
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.99 E-value=32 Score=17.16 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=7.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eow_A 13 YKCNECGKAFR 23 (46)
T ss_dssp EECTTSCCEES
T ss_pred eeccccCChhc
Confidence 77777777654
No 229
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.95 E-value=32 Score=17.14 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yrj_A 12 PYRCGECGKAFA 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 477888877664
No 230
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.94 E-value=34 Score=17.13 Aligned_cols=12 Identities=50% Similarity=0.946 Sum_probs=8.0
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2en9_A 12 LFKCNECKKTFT 23 (46)
T ss_dssp CCBCTTTCCBCS
T ss_pred CEECCccCcccC
Confidence 367777777664
No 231
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.85 E-value=33 Score=16.93 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 10 ~~~C~~C~k~f~ 21 (44)
T 2emx_A 10 PFGCSCCEKAFS 21 (44)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCcccC
Confidence 377888877664
No 232
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=21.84 E-value=39 Score=21.64 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=29.3
Q ss_pred ccccccccccCCCeEEEEe-ccCCCcccCccCcccccCccccCCCcee----eeCCcccCHhHHhhC
Q psy15163 73 TCKQCGQEVRSGDLAVYTE-KLGDQVLWHPQCFVCSTCDELLVDLMYF----HYKGNVYCLRDYATM 134 (176)
Q Consensus 73 ~C~~C~~~i~~~~~~~~~~-~~~~~~~~H~~Cf~C~~C~~~l~~~~~~----~~~g~~yC~~~y~~~ 134 (176)
.|..|+++..+...++.-+ .. ...||..|-. |....+- ..++..+|..|-.+.
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C--~~WfH~~CVg-------lt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASC--QKWFHRECTG-------MTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTT--CCEEEGGGTT-------CCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCccCCCCCEEEecCCc--ccccccccCC-------cCHHHHHhhccCCCCCEECccccCcC
Confidence 7999999975544455553 23 3467877642 2111110 123567888887543
No 233
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.67 E-value=33 Score=17.19 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=8.5
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.|.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2eoo_A 12 PYGCNECGKNFG 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CEEccccCcccC
Confidence 377888877664
No 234
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.67 E-value=33 Score=18.14 Aligned_cols=11 Identities=9% Similarity=-0.131 Sum_probs=5.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.|.
T Consensus 42 ~~C~~C~k~F~ 52 (54)
T 2eps_A 42 HKCQVWVSGPS 52 (54)
T ss_dssp CCSSSSCCSSC
T ss_pred ccCCCCCCCCC
Confidence 45555555543
No 235
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.63 E-value=33 Score=17.14 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=7.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2en3_A 13 FQCKECGMNFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eeCcccChhhC
Confidence 77788877654
No 236
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.59 E-value=31 Score=18.39 Aligned_cols=12 Identities=25% Similarity=0.922 Sum_probs=10.1
Q ss_pred Cccccccccccc
Q psy15163 71 GKTCKQCGQEVR 82 (176)
Q Consensus 71 ~~~C~~C~~~i~ 82 (176)
..+|..|+++|.
T Consensus 17 YRvC~~CgkPi~ 28 (44)
T 2lo3_A 17 YRVCEKCGKPLA 28 (44)
T ss_dssp EEECTTTCCEEE
T ss_pred chhhcccCCcch
Confidence 358999999986
No 237
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.56 E-value=33 Score=17.17 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=7.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eoy_A 13 FKCNKCEKTFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EECcCCCCcCC
Confidence 67777877654
No 238
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.53 E-value=35 Score=16.98 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=7.5
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eop_A 13 HECRECGKSFS 23 (46)
T ss_dssp CBCTTTCCBCS
T ss_pred eeCCCCCchhC
Confidence 67777777654
No 239
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.53 E-value=34 Score=17.07 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=8.5
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em7_A 12 PYKCEECGKGFI 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCccchhC
Confidence 477888877664
No 240
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.51 E-value=34 Score=17.14 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=8.1
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yth_A 12 PFQCEECGKRFT 23 (46)
T ss_dssp SBCCSSSCCCBS
T ss_pred CCCCCCCCcccC
Confidence 367777777654
No 241
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.51 E-value=34 Score=17.12 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=8.5
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2em3_A 12 PYECKVCSKAFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCcccC
Confidence 477888877664
No 242
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=21.44 E-value=34 Score=17.13 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emj_A 12 PFECAECGKSFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred CEECCCCCcccC
Confidence 377888877654
No 243
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.43 E-value=31 Score=17.27 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=7.9
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eq2_A 12 PYQCNECGKAFS 23 (46)
T ss_dssp SSSCCSSCCCCS
T ss_pred CeECCCCCcccC
Confidence 367777777654
No 244
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=21.43 E-value=37 Score=16.96 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emk_A 12 PYECKECGKAFS 23 (46)
T ss_dssp SCBCSSSCCBCS
T ss_pred ceECCCCCchhC
Confidence 367777877664
No 245
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.39 E-value=34 Score=17.15 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yto_A 12 PYKCSDCGKAFT 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CEECcccCCccC
Confidence 377888877654
No 246
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.38 E-value=29 Score=29.94 Aligned_cols=84 Identities=21% Similarity=0.456 Sum_probs=52.2
Q ss_pred CCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh-hCCCccccccccccc
Q psy15163 69 RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA-TMLDIPRCHACDELI 147 (176)
Q Consensus 69 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~-~~~~~~~C~~C~~~I 147 (176)
+....|..|-+.|.+.. ++.|+-.=-.|+.|+-.+ -+....||=..... ..| +.|..|.+-
T Consensus 15 pD~a~C~~Cl~e~~dp~----------~Rry~YpF~nCt~CGPR~-----tii~~lPYDR~~TsM~~F--~mC~~C~~E- 76 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPG----------ERRYRYPFINCTHCGPRF-----TIIRAMPYDRPFTVMAAF--PLCPACDKE- 76 (657)
T ss_dssp CCBCCCHHHHHHHTSTT----------STTTTCTTCCBTTBBCSG-----GGBSSSSCSGGGBGGGGS--CCCHHHHHH-
T ss_pred CchhhhHHHHHHhcCCC----------CcccCCccccCcCCCchH-----HhcccCCCCCCCCcccCC--CCChHHHHH-
Confidence 34458999999997421 555655545788887654 33444444333221 222 567777643
Q ss_pred ccCceEEeCCCccccCCeecccCCccc
Q psy15163 148 FVNEYTLAENKTFHVKHFCCYECDKII 174 (176)
Q Consensus 148 ~~~~~~~a~~~~~H~~CF~C~~C~~~l 174 (176)
|..-.++.||..=-.|..|+-.|
T Consensus 77 ----Y~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 77 ----YRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp ----HHCTTSTTTTCTTCCCTTTSCCE
T ss_pred ----hCCCCCCcCcCCCCcCcccCccc
Confidence 33346788888888888888765
No 247
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.36 E-value=33 Score=17.17 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=8.0
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eoh_A 12 PYECKECRKTFI 23 (46)
T ss_dssp SCCCSSSCCCCS
T ss_pred CcCCCCcCchhC
Confidence 367777777654
No 248
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.31 E-value=30 Score=18.06 Aligned_cols=10 Identities=20% Similarity=0.820 Sum_probs=5.7
Q ss_pred eecccCCccc
Q psy15163 165 FCCYECDKII 174 (176)
Q Consensus 165 F~C~~C~~~l 174 (176)
+.|..|++.|
T Consensus 10 ~~C~~C~~~i 19 (39)
T 2i5o_A 10 VPCEKCGSLV 19 (39)
T ss_dssp EECTTTCCEE
T ss_pred cccccccCcC
Confidence 3566666554
No 249
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.24 E-value=34 Score=17.13 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=8.1
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2ytp_A 12 HYECSECGKAFA 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCcCCcccC
Confidence 377777777654
No 250
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.20 E-value=34 Score=17.12 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em4_A 12 PYECIECGKAFK 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CcCCCCCCCccC
Confidence 477888877664
No 251
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.14 E-value=37 Score=16.88 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=8.1
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eov_A 12 PYKCSDCGKSFT 23 (46)
T ss_dssp SCBCSSSCCBCS
T ss_pred CccCCccChhhC
Confidence 367777777664
No 252
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.11 E-value=33 Score=17.09 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=8.1
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ep1_A 12 PYECSDCGKSFI 23 (46)
T ss_dssp SSCCSSSCCCCS
T ss_pred CcCCCCCCchhC
Confidence 367777777664
No 253
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.99 E-value=34 Score=17.04 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=8.2
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eor_A 12 PYNCEECGKAFI 23 (46)
T ss_dssp SEECTTTCCEES
T ss_pred CccCCCCCCCcC
Confidence 377777777654
No 254
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.95 E-value=36 Score=16.82 Aligned_cols=11 Identities=45% Similarity=1.011 Sum_probs=7.5
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 11 ~~C~~C~k~f~ 21 (43)
T 2yrm_A 11 FFCNECDCRFS 21 (43)
T ss_dssp BCCSSSCCCBS
T ss_pred EECCCCCCeeC
Confidence 66777777654
No 255
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.94 E-value=36 Score=17.04 Aligned_cols=12 Identities=58% Similarity=1.129 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emf_A 12 HFECTECGKAFT 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 377888877664
No 256
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.91 E-value=34 Score=17.10 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=7.3
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eq1_A 13 YKCNECGKAFR 23 (46)
T ss_dssp CCCTTTTCCCS
T ss_pred eECCcCChhhC
Confidence 66777776654
No 257
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.85 E-value=23 Score=16.23 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=6.2
Q ss_pred eecccCCccc
Q psy15163 165 FCCYECDKII 174 (176)
Q Consensus 165 F~C~~C~~~l 174 (176)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 5666776654
No 258
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.82 E-value=35 Score=16.98 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=7.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2epw_A 13 CKCTECGKAFC 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCCccC
Confidence 77777877654
No 259
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=20.80 E-value=36 Score=17.04 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=8.5
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2el6_A 12 PYKCSQCEKSFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred CeECCCCCcccC
Confidence 377888877664
No 260
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.78 E-value=32 Score=17.03 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=8.1
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (44)
T 2eox_A 12 SYNCNECGKAFT 23 (44)
T ss_dssp CEEETTTTEEES
T ss_pred CeECcccCcccC
Confidence 367777777654
No 261
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=38 Score=16.91 Aligned_cols=11 Identities=45% Similarity=1.132 Sum_probs=7.6
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2ytn_A 13 YKCNECGKVFT 23 (46)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCCeeC
Confidence 67777777664
No 262
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.68 E-value=40 Score=16.86 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=8.2
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytq_A 12 PYGCSECGKAFS 23 (46)
T ss_dssp SCBCSSSCCBCS
T ss_pred CcCCCccChhhC
Confidence 367777777664
No 263
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.60 E-value=36 Score=16.99 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=7.8
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eml_A 13 YECSVCGKAFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCcCCccC
Confidence 67777777654
No 264
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.55 E-value=36 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=8.8
Q ss_pred CCeecccCCcccC
Q psy15163 163 KHFCCYECDKIIT 175 (176)
Q Consensus 163 ~CF~C~~C~~~l~ 175 (176)
.-|.|..|++.|.
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2eom_A 11 RGHRCSDCGKFFL 23 (46)
T ss_dssp SSCCCSSSCCCCS
T ss_pred CCcCCCCCCCeeC
Confidence 3477788877664
No 265
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.53 E-value=57 Score=19.24 Aligned_cols=50 Identities=12% Similarity=0.365 Sum_probs=29.6
Q ss_pred cccccccccc-cCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhC
Q psy15163 72 KTCKQCGQEV-RSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 134 (176)
Q Consensus 72 ~~C~~C~~~i-~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~ 134 (176)
..|..|+..- .....++.-+.. +..||..|..-. + +.+|..||..|-..+
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C--~~~~H~~Cl~~~-----~------vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMC--NLAVHQECYGVP-----Y------IPEGQWLCRHCLQSR 67 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSS--CCEEEHHHHTCS-----S------CCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCC--CCccccccCCCC-----c------CCCCCcCCccCcCcC
Confidence 4788887753 112334444434 457898886421 1 345778898886543
No 266
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.43 E-value=36 Score=17.01 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emh_A 12 PYICTVCGKAFT 23 (46)
T ss_dssp SEECTTTCCEES
T ss_pred CcCCCCCCchhC
Confidence 477777877654
No 267
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.40 E-value=37 Score=16.96 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=8.2
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yu8_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCcCCchhC
Confidence 377777877654
No 268
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=20.33 E-value=37 Score=16.88 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2el4_A 12 PYGCSQCAKTFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred ceECCCCCchhC
Confidence 377888877654
No 269
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.31 E-value=34 Score=17.12 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=7.8
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2yti_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp TTCCSSSCCCCS
T ss_pred CeECCCCCcccC
Confidence 366777777654
No 270
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.30 E-value=38 Score=16.90 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2emp_A 12 PYMCNECGKAFS 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 377888877654
No 271
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.29 E-value=36 Score=16.99 Aligned_cols=12 Identities=33% Similarity=0.910 Sum_probs=8.2
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2eq0_A 12 PYKCHECGKVFR 23 (46)
T ss_dssp CEECTTTCCEES
T ss_pred CeECCCCCchhC
Confidence 377777777654
No 272
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.28 E-value=40 Score=16.85 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=7.5
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2elz_A 13 YKCEDCGKGYN 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred eeCcccCchhC
Confidence 66777777654
No 273
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.24 E-value=37 Score=16.94 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=8.3
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emy_A 12 PYECHECGKAFS 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CcCCCCCCcccC
Confidence 377888877654
No 274
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.05 E-value=38 Score=16.91 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=8.4
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytj_A 12 PYICAECGKAFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCChhhC
Confidence 477888877654
No 275
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.03 E-value=38 Score=16.95 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=8.5
Q ss_pred CeecccCCcccC
Q psy15163 164 HFCCYECDKIIT 175 (176)
Q Consensus 164 CF~C~~C~~~l~ 175 (176)
-|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em2_A 12 PFKCKECGKAFR 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CEECCcCCchhC
Confidence 477888877654
No 276
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=20.00 E-value=38 Score=16.92 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=7.5
Q ss_pred eecccCCcccC
Q psy15163 165 FCCYECDKIIT 175 (176)
Q Consensus 165 F~C~~C~~~l~ 175 (176)
|.|..|++.+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ely_A 13 FKCVECGKGFS 23 (46)
T ss_dssp BCCSSSCCCBS
T ss_pred cccCccCcccC
Confidence 67777777654
Done!