RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15163
(176 letters)
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 82.5 bits (204), Expect = 2e-21
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
C +C + + + V+ + WH CF C+ C L + + + C +
Sbjct: 5 SSGCVECRKPIGADSKEVHYKNR----FWHDTCFRCAKCLHPLANETFVAKDNKILCNKC 60
Query: 131 YATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYEC 170
T D P+C C + I + + +H F
Sbjct: 61 T-TREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 40.1 bits (94), Expect = 3e-05
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 138 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDK 172
C C + I + + +N+ +H F C +C
Sbjct: 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLH 41
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 76.1 bits (187), Expect = 5e-18
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDE 111
+ C C Q + + ++ WH +C CS C
Sbjct: 41 GIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRH-----WHSKCLKCSDCHV 95
Query: 112 LLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYEC 170
L + F +VYC D+ +C AC I + A++ +H+ F C C
Sbjct: 96 PLAE-RCFSRGESVYCKDDFFKRFG-TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVC 153
Query: 171 DKIIT 175
+ +
Sbjct: 154 KRQLA 158
Score = 44.9 bits (106), Expect = 2e-06
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 101 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTF 160
+ + G+ + T +IP C CD+ I A ++ +
Sbjct: 25 ERLITRLENTQFDAANGIDDEGGSGGHMGSGGTP-EIPMCAGCDQHILDRFILKALDRHW 83
Query: 161 HVKHFCCYECDKIITQ 176
H K C +C + +
Sbjct: 84 HSKCLKCSDCHVPLAE 99
Score = 44.5 bits (105), Expect = 3e-06
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCL 128
G C C + + + D V +H CF C C L D Y + C
Sbjct: 119 GTKCAACQLGIPPTQVVR---RAQDFV-YHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 174
Query: 129 RDYATM 134
DY T
Sbjct: 175 ADYETA 180
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 76.0 bits (187), Expect = 5e-18
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
C C Q + + ++ WH +C CS C L + F +VYC D+
Sbjct: 9 CAGCDQHILDRFILKALDRH-----WHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFK 62
Query: 134 MLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKIIT 175
+C AC I + A++ +H+ F C C + +
Sbjct: 63 RFG-TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLA 104
Score = 56.4 bits (136), Expect = 1e-10
Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCL 128
G C C + + + D V +H CF C C L D Y + C
Sbjct: 65 GTKCAACQLGIPPTQVVR---RAQDFV-YHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 120
Query: 129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCC 167
DY T +A + H
Sbjct: 121 ADYETAKQ-GGSGGSGGSG-GGTPMVAASPERHDGGLQA 157
Score = 42.5 bits (100), Expect = 1e-05
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 132 ATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
+ +IP C CD+ I A ++ +H K C +C + +
Sbjct: 1 GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE 45
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 70.8 bits (173), Expect = 7e-16
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLM--YFHYKGNVYC 127
S K C CG ++ L + WH +C CS+C L D+ + G + C
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSY-----WHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 58
Query: 128 LRDYATMLDI-PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKIIT 175
DY + C AC + I +E + A+ +H+K F C C +
Sbjct: 59 RNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLV 108
Score = 45.0 bits (106), Expect = 2e-06
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYK-GNVYCLRDYA 132
C CGQ + + +L + + V +H +CF CSTC LV FHY G+++C D
Sbjct: 72 CSACGQSIPASELVM---RAQGNV-YHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 127
Query: 133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
T L D+
Sbjct: 128 TALI-NGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDE 166
Score = 40.4 bits (94), Expect = 7e-05
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 135 LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
L RC C I A + +H + C C +
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD 44
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 69.0 bits (169), Expect = 7e-16
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY--KGNVYC 127
S TC C Q + ++ WH C C C L ++ Y G C
Sbjct: 1 SLLTCGGCQQNIGDRYFLKAIDQY-----WHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC 55
Query: 128 LRDYATMLDI-PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKIIT 175
RDY + C +CD+ I E T+ ++K +H++ F C C K
Sbjct: 56 RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFC 105
Score = 40.9 bits (96), Expect = 2e-05
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGN-VYCLRD 130
C C + +R+ ++ + ++ D+V +H +CF C+ C + + + + C +D
Sbjct: 67 GLCASCDKRIRAYEMTM---RVKDKV-YHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 122
Query: 131 YATML 135
Sbjct: 123 IYEWT 127
Score = 37.0 bits (86), Expect = 8e-04
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
+ C C + I + A ++ +H C C + +
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGE 41
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 67.8 bits (166), Expect = 2e-15
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
C C + + S + + WH + F C CD +L +Y C Y
Sbjct: 6 CAGCDELIFSNEYTQAENQN-----WHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVK 60
Query: 134 MLDIPRCHACDELIFVNEYTL-AENKTFH--VKHFCCYECDK 172
C C I + N ++H + F C C K
Sbjct: 61 NH-AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 101
Score = 59.3 bits (144), Expect = 4e-12
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 136 DIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
+ PRC CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct: 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILA 41
Score = 44.3 bits (105), Expect = 2e-06
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
C+ C + V +CF+CS C + L+ + +G V+C +
Sbjct: 63 AVVCQGCHNAIDPEVQRV--TYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVE 120
Query: 131 Y 131
Sbjct: 121 C 121
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 59.7 bits (145), Expect = 1e-12
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
+ Y PRC C + + T ++ +H + C C +
Sbjct: 2 SSGSSGPCYENKF-APRCARCSKTLTQGGVT-YRDQPWHRECLVCTGCQTPLA 52
Score = 46.6 bits (111), Expect = 9e-08
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDEL 112
G+ + GPC PR C +C + + G + WH +C VC+ C
Sbjct: 1 GSSGSSGPCYENKFAPR----CARCSKTLTQGGVTY----RDQP--WHRECLVCTGCQTP 50
Query: 113 LVDLMYFHYKGNVYCLRDYATM 134
L + + YC+ + +
Sbjct: 51 LAGQQFTSRDEDPYCVACFGEL 72
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 56.0 bits (135), Expect = 3e-11
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 57 THGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDL 116
HG G+ P C +CG + + HP+CFVC+ C+ L
Sbjct: 15 VHGGAGSAQRMPL----CDKCGSGIVG----AVVKARDKY--RHPECFVCADCNLNLKQK 64
Query: 117 MYFHYKGNVYCLRDYATMLDIPRCHA 142
YF +G +YC
Sbjct: 65 GYFFVEGELYCETHARARTS-GPSSG 89
Score = 40.9 bits (96), Expect = 1e-05
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
+P C C I V A +K H + F C +C+ + Q
Sbjct: 25 MPLCDKCGSGI-VGAVVKARDKYRHPECFVCADCNLNLKQ 63
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 54.8 bits (132), Expect = 8e-11
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDEL 112
G+ + G GN P C +CG + V+ + HP+C+VC+ C
Sbjct: 1 GSSGSSGSIGNAQKLP----MCDKCGTGIVG----VFVKLRDRH--RHPECYVCTDCGTN 50
Query: 113 LVDLMYFHYKGNVYCLRDYATMLDIPRCHA 142
L +F + +YC + +
Sbjct: 51 LKQKGHFFVEDQIYCEKHARERVS-GPSSG 79
Score = 38.2 bits (89), Expect = 1e-04
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
+P C C I V + ++ H + + C +C + Q
Sbjct: 15 LPMCDKCGTGI-VGVFVKLRDRHRHPECYVCTDCGTNLKQ 53
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 54.3 bits (131), Expect = 1e-10
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKII 174
+ + P+C C + I + + +H F C C ++I
Sbjct: 2 SSGSSGKCTTRED-SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI 53
Score = 47.7 bits (114), Expect = 3e-08
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 59 GPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMY 118
G C + P+ CK C + + +GD V E G WH CF CS C +++ +
Sbjct: 7 GKCTTREDSPK----CKGCFKAIVAGDQNV--EYKGTV--WHKDCFTCSNCKQVIGTGSF 58
Query: 119 FHYKGNVYCLRDY 131
F + YC+ +
Sbjct: 59 FPKGEDFYCVTCH 71
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 54.0 bits (130), Expect = 2e-10
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 118 YFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
V P C C+++I + +A K++H + F C C +
Sbjct: 6 SGDQDTLVQRAEHIPAGKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAY 63
Score = 51.7 bits (124), Expect = 1e-09
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDE 111
SG+ T + + C C Q +R + LG WHP+ F C+ C
Sbjct: 6 SGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGP----FLVALGKS--WHPEEFNCAHCKN 59
Query: 112 LLVDLMYFHYKGNVYCLRDYATMLDIPRC 140
+ + + KG +YC Y
Sbjct: 60 TMAYIGFVEEKGALYCELCYEKFFA-SGP 87
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 53.6 bits (129), Expect = 2e-10
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
C CG++V V L +H CFVCSTC L ++ + YC Y
Sbjct: 7 GCGGCGEDVVGDGAGV--VALDRV--FHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYV 62
Query: 133 TMLDIPRCHAC 143
L+ +
Sbjct: 63 ATLE--SGPSS 71
Score = 37.0 bits (86), Expect = 2e-04
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 138 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDK 172
C C E + + + A ++ FHV F C C
Sbjct: 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRA 41
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 52.4 bits (126), Expect = 5e-10
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 67 QPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVY 126
Q + TC++C + V + + L+H QCFVC+ C + + +++ ++G Y
Sbjct: 7 QGSASATCERCKGGFAPAEKIVNS----NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKY 62
Query: 127 CLRDYATM 134
C D+ +
Sbjct: 63 CEHDFQML 70
Score = 38.5 bits (90), Expect = 6e-05
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 138 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDK 172
C C E + + +H + F C +C +
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQ 47
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 51.2 bits (123), Expect = 1e-09
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129
+ TC++C + V + L+H QCFVC+ C + + +++ ++G YC
Sbjct: 10 ASATCERCKGGFAPAEKIVNSNG----ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEH 65
Query: 130 DYATML 135
D+ +
Sbjct: 66 DFQMLF 71
Score = 38.9 bits (91), Expect = 5e-05
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 138 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDK 172
C C E + + +H + F C +C +
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQ 47
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 50.0 bits (120), Expect = 3e-09
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
C C + + +G Q WH + FVC+ C++ + ++ KG YC Y
Sbjct: 7 ICGACRRPIEGR----VVNAMGKQ--WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN 60
Query: 133 TM 134
+
Sbjct: 61 QL 62
Score = 45.7 bits (109), Expect = 1e-07
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
P C AC I A K +HV+HF C +C+K
Sbjct: 6 PICGACRRPI-EGRVVNAMGKQWHVEHFVCAKCEKPFLG 43
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 49.7 bits (119), Expect = 5e-09
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
C++C + + G + E G WH CF+C C + + + +C+ Y
Sbjct: 8 CQECKKTIMPGTRKM--EYKGSS--WHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61
Score = 45.8 bits (109), Expect = 1e-07
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 138 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKII 174
C C + I + + ++H F C+ C + I
Sbjct: 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPI 43
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 51.6 bits (123), Expect = 9e-09
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 6/102 (5%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
GK C C + V + +H CF+C C + L + +YC
Sbjct: 7 GKKCGVCQKAVYFAEEVQCEGSS-----FHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSC 61
Query: 131 YATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
Y P+ E+ + +
Sbjct: 62 YGKKYG-PKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTN 102
Score = 47.3 bits (112), Expect = 3e-07
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 56 VTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVD 115
T+ + C +CGQ V + + + K WH CF C+ C + L
Sbjct: 100 PTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKS-----WHKSCFRCAKCGKSLES 154
Query: 116 LMYFHYKGNVYCLRDYATMLDIPRCHACDE 145
G +YC YA P+ +
Sbjct: 155 TTLADKDGEIYCKGCYAKNFG-PKGFGFGQ 183
Score = 44.6 bits (105), Expect = 3e-06
Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 17/119 (14%)
Query: 73 TCKQCGQEVRSGDLAVYTEKL----------------GDQVLWHPQCFVCSTCDELLVDL 116
C C + + S +AV+ +++ + +
Sbjct: 36 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEG 95
Query: 117 MYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
C C + ++ E + K++H F C +C K +
Sbjct: 96 QSHRPTNPNASRMAQKVG-GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLE 153
Score = 41.9 bits (98), Expect = 3e-05
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
+C C + ++ E E +FH F C C K +
Sbjct: 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLD 45
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 48.9 bits (117), Expect = 1e-08
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
P+C CD+ ++ E + K +H C +C K +T
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLT 38
Score = 40.4 bits (95), Expect = 1e-05
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
C +C +EV + WH C C C + L + ++G YC +
Sbjct: 3 CPKCDKEVYFAE-----RVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYS 57
Query: 134 MLDIPRCHAC 143
+ P+
Sbjct: 58 AMFGPKGFGR 67
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 48.9 bits (117), Expect = 1e-08
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
C C + V L+ WHP+CFVC C +F G +C
Sbjct: 15 SPKCGGCNRPVLENYLSAMDTV------WHPECFVCGDCFTSFSTGSFFELDGRPFCELH 68
Query: 131 YATM 134
Y
Sbjct: 69 YHHR 72
Score = 48.5 bits (116), Expect = 1e-08
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
+ +D+ M P+C C+ + + Y A + +H + F C +C
Sbjct: 2 SSGSSGKDFLAMF-SPKCGGCNRPV-LENYLSAMDTVWHPECFVCGDCFT 49
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 48.5 bits (116), Expect = 1e-08
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
+C CD+ ++ E + K +H C C K +T
Sbjct: 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT 47
Score = 41.6 bits (98), Expect = 5e-06
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129
C +C + V + + WH C C C + L + + G +C +
Sbjct: 8 MASKCPKCDKTVYFAE-----KVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK 62
Query: 130 DY 131
Sbjct: 63 PC 64
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 48.5 bits (116), Expect = 1e-08
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
C CG+ V G E G WH CF+CS C++ L + KG YC+ Y
Sbjct: 8 CSACGETVMPGSR--KLEYGGQT--WHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY 61
Score = 47.4 bits (113), Expect = 4e-08
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 138 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKIIT 175
C AC E + +T+H F C C++ +
Sbjct: 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG 44
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 48.3 bits (115), Expect = 2e-08
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
C C + Y Q WH CF C C LV + + ++ C
Sbjct: 5 SSGCAGCTNPISGLGGTKYISFEERQ--WHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 62
Query: 131 Y 131
Sbjct: 63 G 63
Score = 34.8 bits (80), Expect = 0.001
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 138 PRCHACDELI---FVNEYTLAENKTFHVKHFCCYECDK 172
C C I +Y E + +H F C +C
Sbjct: 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSL 43
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 48.2 bits (115), Expect = 2e-08
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
C QCG+ + + + + WHP+CF C C E+L D+ + G C +
Sbjct: 6 SGCHQCGEFIIGR----VIKAMNNS--WHPECFRCDLCQEVLADIGFVKNAGRHLCRPCH 59
Query: 132 ATM 134
Sbjct: 60 NRE 62
Score = 39.7 bits (93), Expect = 2e-05
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
CH C E I + A N ++H + F C C +++
Sbjct: 5 SSGCHQCGEFI-IGRVIKAMNNSWHPECFRCDLCQEVLAD 43
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 47.8 bits (114), Expect = 3e-08
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
C +C + + SG + DQ WH CFVC TC + L + + YC+ Y
Sbjct: 6 SGCVKCNKAITSGGITY-----QDQP-WHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59
Query: 132 ATMLDIPRCH 141
+
Sbjct: 60 KNFVS-GPSS 68
Score = 45.5 bits (108), Expect = 2e-07
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
C C++ I T +++ +H F C C K +
Sbjct: 6 SGCVKCNKAITSGGIT-YQDQPWHADCFVCVTCSKKLA 42
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 47.0 bits (112), Expect = 7e-08
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 67 QPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVY 126
+ R C C +E++ G + +K WH CF C TC +L Y G Y
Sbjct: 11 KIRGPSHCAGCKEEIKHGQSLLALDKQ-----WHVSCFKCQTCSVILTG-EYISKDGVPY 64
Query: 127 CLRDY 131
C DY
Sbjct: 65 CESDY 69
Score = 37.8 bits (88), Expect = 1e-04
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
C C E I + LA +K +HV F C C I+T
Sbjct: 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT 53
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 47.0 bits (112), Expect = 7e-08
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKL-GDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129
G C CG+ V E++ D +H CF+C C + L + VYC
Sbjct: 7 GNKCGACGRTVYHA------EEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKS 60
Query: 130 DYATMLDIPRCHACDE 145
Y P+ + +
Sbjct: 61 CYGKKYG-PKGYGYGQ 75
Score = 40.1 bits (94), Expect = 2e-05
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
+C AC ++ E + ++FH F C C K +
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLD 45
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 46.2 bits (110), Expect = 9e-08
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
C C + I T + +H + F C C K ++
Sbjct: 6 SGCVQCKKPITTGGVT-YREQPWHKECFVCTACRKQLS 42
Score = 46.2 bits (110), Expect = 1e-07
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
C QC + + +G + Y E+ WH +CFVC+ C + L + YCL
Sbjct: 5 SSGCVQCKKPITTGGV-TYREQP-----WHKECFVCTACRKQLSGQRFTARDDFAYCLNC 58
Query: 131 Y 131
+
Sbjct: 59 F 59
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 46.4 bits (110), Expect = 1e-07
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 127
C C + + A + Q WH +CF C C LV + ++C
Sbjct: 5 SSGCVACSKPISGLTGAKFICFQDSQ--WHSECFNCGKCSVSLVGKGFLTQNKEIFC 59
Score = 35.2 bits (81), Expect = 0.001
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 138 PRCHACDELI---FVNEYTLAENKTFHVKHFCCYECDK 172
C AC + I ++ ++ +H + F C +C
Sbjct: 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSV 43
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 46.3 bits (110), Expect = 1e-07
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
+ +DY CH C L+ + +A +H + F C C II
Sbjct: 2 SSGSSGKDYWGKFG-EFCHGCSLLM-TGPFMVAGEFKYHPECFACMSCKVIIE 52
Score = 41.3 bits (97), Expect = 7e-06
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCL 128
G+ C C + + K +HP+CF C +C ++ D +YC
Sbjct: 15 GEFCHGCSLLMTGPFMVAGEFK------YHPECFACMSCKVIIEDGDAYALVQHATLYCG 68
Query: 129 RDYATMLDIPRCHA 142
+ + ++
Sbjct: 69 KCHNEVV-SGPSSG 81
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 45.9 bits (109), Expect = 1e-07
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 123 GNVYCLRDYATMLDIPRCHACDELI----FVNEYTLAENKTFHVKHFCCYECDKIIT 175
+ Y + +C C I + E +++H F C +C +
Sbjct: 2 SSGSSGDCYKNFV-AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA 57
Score = 42.5 bits (100), Expect = 3e-06
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
K C C + Q WH CF C C L + + ++ VYC
Sbjct: 15 AKKCAGCKNPITGFGKGSSVVAYEGQS-WHDYCFHCKKCSVNLANKRFVFHQEQVYCPDC 73
Query: 131 Y 131
Sbjct: 74 A 74
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 47.3 bits (112), Expect = 1e-07
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%)
Query: 68 PRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLM--YFHYKGNV 125
S K C CG ++ L + WH +C CS+C L D+ + G +
Sbjct: 2 SLSWKRCAGCGGKIADRFLLYAMDSY-----WHSRCLKCSSCQAQLGDIGTSSYTKSGMI 56
Query: 126 YCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
C DY + + + + + E +++IT+
Sbjct: 57 LCRNDYIRLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITR 107
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 47.4 bits (112), Expect = 1e-07
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYK-GNVYCLRD 130
C C + +R+ ++ + ++ D+V +H +CF C+ C + + ++ C +D
Sbjct: 9 GLCASCDKRIRAYEMTM---RVKDKV-YHLECFKCAACQKHFSVGDRYLLINSDIVCEQD 64
Query: 131 YATMLDIPRCHACDELIFVNEYTLAEN 157
I + + E
Sbjct: 65 IYEWTKINGGSGGSGGSGGDVMVVGEP 91
Score = 36.6 bits (84), Expect = 8e-04
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 138 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDK 172
C +CD+ I E T+ ++K +H++ F C C K
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQK 44
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 46.0 bits (109), Expect = 2e-07
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 60 PCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF 119
Q + +TC +C + V + L +Q ++H CF CS C+ L Y
Sbjct: 4 GSSGMKFQAPARETCVECQKTVYPME-----RLLANQQVFHISCFRCSYCNNKLSLGTYA 58
Query: 120 HYKGNVYCLRDYATM 134
G +YC + +
Sbjct: 59 SLHGRIYCKPHFNQL 73
Score = 39.8 bits (93), Expect = 3e-05
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
C C + ++ E LA + FH+ F C C+ ++
Sbjct: 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLS 53
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 45.6 bits (108), Expect = 2e-07
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
TC +C Q + + D+ +H CF C C L D + + C Y
Sbjct: 16 NTCAECQQLIGHDSREL---FYEDRH-FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCY 71
Query: 132 ATMLDIPRCHA 142
+ +
Sbjct: 72 CSAFS-SGPSS 81
Score = 42.1 bits (99), Expect = 4e-06
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDK 172
+ Y C C +LI + L E++ FH F C C +
Sbjct: 2 SSGSSGPCYDNTF-ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQR 51
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 45.1 bits (106), Expect = 7e-07
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDE 111
G G+ + S K C CG ++ L + WH +C CS+C
Sbjct: 42 QSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSY-----WHSRCLKCSSCQA 96
Query: 112 LLVDLM--YFHYKGNVYCLRDYATM 134
L D+ + G + C DY +
Sbjct: 97 QLGDIGTSSYTKSGMILCRNDYIRL 121
Score = 37.8 bits (87), Expect = 4e-04
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 135 LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
L RC C I A + +H + C C
Sbjct: 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQA 96
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 42.4 bits (100), Expect = 3e-06
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 69 RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYK-GNVYC 127
+ + C C Q + L +G +HP CF C C L + + ++C
Sbjct: 13 ATLEKCATCSQPILDRILRA----MGKA--YHPGCFTCVVCHRGLDGIPFTVDATSQIHC 66
Query: 128 LRDYATMLDIPRCHA 142
+ D+ +
Sbjct: 67 IEDFHRKFA-SGPSS 80
Score = 39.7 bits (93), Expect = 3e-05
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
+ +C C + I ++ A K +H F C C + +
Sbjct: 15 LEKCATCSQPI-LDRILRAMGKAYHPGCFTCVVCHRGLD 52
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 42.2 bits (99), Expect = 4e-06
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
C C E ++V E FH F C+ C+ +
Sbjct: 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLW 53
Score = 35.7 bits (82), Expect = 0.001
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 59 GPCGNKLTQPRSGK--TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDL 116
G G+ +G C CG+ + + + +H CF C TC+ L
Sbjct: 1 GSSGSSGQHQEAGAGDLCALCGEHLYVLE-----RLCVNGHFFHRSCFRCHTCEATLWPG 55
Query: 117 MYFHYK--GNVYCLRDY 131
Y + G+ YCL+
Sbjct: 56 GYEQHPGDGHFYCLQHL 72
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 41.7 bits (98), Expect = 5e-06
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 59 GPCGNKLTQPRSGKT--CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDL 116
G G+ + R C++C + L + +HP F C+ C + L
Sbjct: 1 GSSGSSGEKARGLGKYICQKCHAIIDEQPLIFKNDP------YHPDHFNCANCGKEL-TA 53
Query: 117 MYFHYKGNVYCLRDYATM 134
KG +YCL + M
Sbjct: 54 DARELKGELYCLPCHDKM 71
Score = 37.1 bits (86), Expect = 3e-04
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
+ A L C C +I + + +N +H HF C C K +T
Sbjct: 7 GEKARGLGKYICQKCHAII-DEQPLIFKNDPYHPDHFNCANCGKELT 52
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 40.5 bits (95), Expect = 1e-05
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 130 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
DY + RC +CD+ I E A KT+H F C C
Sbjct: 9 DYQRLYG-TRCFSCDQFI-EGEVVSALGKTYHPDCFVCAVCRLPFP 52
Score = 39.0 bits (91), Expect = 6e-05
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGN-VYC 127
G C C Q + G++ K +HP CFVC+ C + G C
Sbjct: 15 GTRCFSCDQFIE-GEVVSALGKT-----YHPDCFVCAVCRLPFPPGDRVTFNGKECMC 66
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 40.8 bits (95), Expect = 2e-05
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRD 130
TC C Q + ++ WH C C C L ++ ++ G C RD
Sbjct: 5 TCGGCQQNIGDRYFLKAIDQY-----WHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 59
Query: 131 YATMLDIPRCHACD 144
Y L H
Sbjct: 60 Y-LRLGGSGGHMGS 72
Score = 34.3 bits (78), Expect = 0.006
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
+ C C + I + A ++ +H C C + +
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGE 42
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 34.4 bits (79), Expect = 0.002
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWH--PQCFVCSTCDELLVDLMYFHYKGNVYC 127
C+ C + V + WH +CF+CS C + L+ + +G V+C
Sbjct: 3 VVCQGCHNAIDPEVQRV---TYNNFS-WHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 24.8 bits (54), Expect = 5.0
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 139 RCHACDELIFVNEYTLA-ENKTFHVKH--FCCYECDK 172
C C I + N ++H F C C K
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 40
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 32.8 bits (74), Expect = 0.008
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
C +C++ I A K +H C C ++
Sbjct: 6 SGCDSCEKYI-TGRVLEAGEKHYHPSCALCVRCGQMF 41
Score = 30.8 bits (69), Expect = 0.052
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFH-YKGNVYC 127
C C + + +G + EK +HP C +C C ++ + + +++
Sbjct: 7 GCDSCEKYI-TGRVLEAGEKH-----YHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 34.3 bits (79), Expect = 0.013
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYEC 170
R + M P C ACD+ EY ++ FH + C EC
Sbjct: 59 RPFTVMAAFPLCPACDK-----EYRDPLDRRFHAQPVACPEC 95
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 32.0 bits (73), Expect = 0.082
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYEC 170
R +M P C C EY ++ FH + C++C
Sbjct: 153 RAKTSMKVFPMCEKCSR-----EYHDPHDRRFHAQPVACFDC 189
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 1.3
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 15/47 (31%)
Query: 73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTC----DELLVD 115
TC +C + V GD VC+ C + LVD
Sbjct: 23 TCPECKV--YPPKI-VERFSEGDV--------VCALCGLVLSDKLVD 58
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 28.0 bits (63), Expect = 1.7
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 78 GQEVRSGDLAVYTEKLGDQV--LWHPQCFVCSTC 109
E R DL K GD + C C C
Sbjct: 87 NGEKR--DLNGELLKPGDLIVWNRGITCGECYWC 118
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism,
nucleotide biosynthesis, zinc, hexamer, hydrolase,
metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Length = 178
Score = 26.6 bits (59), Expect = 3.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 156 ENKTFHVKHFCCYECDKIITQ 176
+ + +V F C EC K+I Q
Sbjct: 96 KGCSMYVALFPCNECAKLIIQ 116
>3ea1_A 1-phosphatidylinositol phosphodiesterase;
phosphatidylinositol-specific phospholipase C, PI-PLC,
dimer, interfacially impaired; 1.75A {Bacillus
thuringiensis} PDB: 3ea2_A* 3ea3_A 1t6m_A 2or2_A 1gym_A*
1ptd_A 1ptg_A* 7ptd_A 2ptd_A 4ptd_A 3ptd_A 6ptd_A 5ptd_A
Length = 298
Score = 26.2 bits (57), Expect = 6.3
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 49 THGSGNGVTHGPCGNKL--TQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVC 106
TH SG P TQ + G R D+ VL H ++
Sbjct: 31 THDSGTFKLQNPIKQVWGMTQEYDFRYQMDHG--ARIFDIRGRLTDDNTIVLHHGPLYLY 88
Query: 107 STCDELLVDLMYF 119
T E + + F
Sbjct: 89 VTLHEFINEAKQF 101
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 25.6 bits (55), Expect = 7.8
Identities = 12/115 (10%), Positives = 28/115 (24%), Gaps = 8/115 (6%)
Query: 64 KLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKG 123
+ + K C C + + D C C + + + +
Sbjct: 68 RTGKGYDKKICNICHIL---KNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEK 124
Query: 124 NVYCLRDYATMLDIPRCHACDELIFVNEYTLA----ENKTFHVKHFCCYECDKII 174
+ C C++ V + T + + C C+ +
Sbjct: 125 KKM-DEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNTGL 178
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
tungstoenzyme, tungsten containing protein, hypertherm
oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus}
SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Length = 619
Score = 25.8 bits (56), Expect = 9.2
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 8 PNGAPTSATVRVTNLDDLVDDLSRA 32
G P T++ +LD ++ +L +
Sbjct: 591 ERGIPKKETLKELDLDFVIPELEKV 615
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.455
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,764,309
Number of extensions: 157637
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 120
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)