RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15163
(176 letters)
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 32.8 bits (75), Expect = 0.001
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATM 134
FVC+ C + + +++ ++G YC D+ +
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 31
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 31.1 bits (71), Expect = 0.005
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF 165
+D+ M P+C C+ + + Y A + +H + F
Sbjct: 1 KDFLAMFS-PKCGGCNRPV-LENYLSAMDTVWHPECF 35
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 29.0 bits (65), Expect = 0.038
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHF 165
P C C+++I + +A K++H + F
Sbjct: 18 TPMCAHCNQVI-RGPFLVALGKSWHPEEF 45
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
{Escherichia coli [TaxId: 562]}
Length = 140
Score = 27.3 bits (60), Expect = 0.75
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 47 GLTHGSGNGVTHGPCGNKLTQPRSG 71
G GSG G T G G+K + RSG
Sbjct: 17 GRGIGSGLGKTGG-RGHKGQKSRSG 40
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 25.2 bits (55), Expect = 0.90
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 138 PRCHACDELIFVNEYTLAENKTFH 161
C C + ++ E + K++H
Sbjct: 16 DGCPRCGQAVYAAEKVIGAGKSWH 39
Score = 23.3 bits (50), Expect = 4.7
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 59 GPCGNKLTQ-PRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF 104
P +++ Q C +CGQ V + + + +G WH CF
Sbjct: 2 NPNASRMAQKVGGSDGCPRCGQAVYAAE-----KVIGAGKSWHKSCF 43
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 24.3 bits (53), Expect = 1.3
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHF 165
C C + ++ E LA + FH+ F
Sbjct: 8 ETCVECQKTVYPMERLLANQQVFHISCF 35
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 26.9 bits (58), Expect = 1.4
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 92 KLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI-FVN 150
K D++L +T D LL+ F KGN + ++P D N
Sbjct: 36 KDTDRLL---AMLEMNTKDVLLL----FTNKGNYLYCPVH----ELPDIRWKDLGQHIAN 84
Query: 151 EYTLAENKTFHVKHFCCYECD 171
+ ++
Sbjct: 85 IIPIDRDEEIIKAIPINDFEL 105
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 24.4 bits (53), Expect = 1.4
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 139 RCHACDELIFVNEYTLAENKTFH 161
C C E ++V E FH
Sbjct: 10 LCALCGEHLYVLERLCVNGHFFH 32
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 33
Score = 24.5 bits (53), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 106 CSTCDELLVDLMYFHY-KGNVYCLRDYATML 135
CSTC LV FHY G+++C D T L
Sbjct: 2 CSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 32
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 409
Score = 26.9 bits (59), Expect = 1.7
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 8 PNGAPTSATVRVTNLDDLVDDLSRAS 33
G P T++ +LD ++ +L + +
Sbjct: 381 ERGIPKKETLKELDLDFVIPELEKVT 406
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
thermophilus [TaxId: 274]}
Length = 146
Score = 25.4 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 47 GLTHGSGNGVTHGPCGNKLTQPRSG 71
G GSG+G T G+K + RSG
Sbjct: 16 GRGPGSGHGKTAT-RGHKGQKSRSG 39
>d1hwmb1 b.42.2.1 (B:3-135) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 133
Score = 24.1 bits (51), Expect = 7.4
Identities = 13/102 (12%), Positives = 23/102 (22%), Gaps = 4/102 (3%)
Query: 9 NGAPTSATVRVTNLDDLVDDLSRASVNGGRQ----NINGSVNGLTHGSGNGVTHGPCGNK 64
P T R+ D L D+ G N +
Sbjct: 3 CAIPAPFTRRIVGRDGLCVDVRNGYDTDGTPIQLWPCGTQRNQQWTFYNDKTIRSMGKCM 62
Query: 65 LTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVC 106
+ + + + A E L D + +P +
Sbjct: 63 TANGLNSGSYIMITDCSTAAEDATKWEVLIDGSIINPSSGLV 104
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 22.4 bits (48), Expect = 7.5
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 105 VCSTCDELLVDLMYFHYKGNVYCLRDY 131
VC C +F G +C Y
Sbjct: 1 VCGDCFTSFSTGSFFELDGRPFCELHY 27
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 22.5 bits (48), Expect = 8.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 104 FVCSTCDELLVDLMYFHYKGNVYCLRDY 131
FVC+ C++ + ++ KG YC Y
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHY 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.455
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 699,963
Number of extensions: 32580
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 32
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)