BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15165
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 87/215 (40%), Gaps = 52/215 (24%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYS 426
EK Y C C K F+ ++L H R HT EKPYKC +CG +F+ L H+ +
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT------- 71
Query: 427 YETYLKHLKTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDHIQPRMKQKQICEICCAEVY 486
H E C CG ++R+ L H + H +
Sbjct: 72 ------------HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-------------- 105
Query: 487 HINGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQ 546
CP C K+F ++L+ H++ H + + C C K F+
Sbjct: 106 --------------YACPECGKSF---SQLA-HLRAHQRTHTGEKPYKCPECGKSFSRED 147
Query: 547 YLKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNHKQ 580
L H RTHT EKPYKC CG F+ +L H++
Sbjct: 148 NLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
Query: 249 FKCRVCDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAK 308
+ C C + D L H ++ G E C CG ++ L H R GE K
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTG--EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 309 RKEKKICDICSAEVVHLAIHKKHSHSGQ-YHVCPHCGKKFTRKAELQLHIKGIHLKHQLE 367
E C ++ +L H++ +H+G+ + CP CGK F++ A L+ H + H E
Sbjct: 80 CPE---CGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQR----THTGE 131
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 419
K Y C C K F+ + L H R HT EKPYKC +CG +F+ +L H+ +
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 399
CP CGK F++ + LQ H + H EK Y C C K F+ + L++H R HT EKPYK
Sbjct: 7 CPECGKSFSQSSNLQKHQR----THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 400 CKDCGAAFNHNVSLKNHKNS 419
C +CG +F+ + L H+ +
Sbjct: 63 CPECGKSFSRSDHLSRHQRT 82
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 366 LEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 419
+EK Y C C K F+ + L++H R HT EKPYKC +CG +F+ + L+ H+ +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPY 561
+CP C K+F + + L H + H + + C C K F+ L++H RTHT EKPY
Sbjct: 6 KCPECGKSFSQSSNLQKHQR----THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 562 KCV-CGLGFNFNVSLKNHKQ 580
KC CG F+ + L H++
Sbjct: 62 KCPECGKSFSRSDHLSRHQR 81
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 315 CDICSAEVVHLAIHKKH--SHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYI 371
C C + +KH +H+G+ + CP CGK F++ ++LQ H + H EK Y
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR----THTGEKPYK 62
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEK 396
C C K F+ ++L RH R H N+K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 529 LRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNHKQ 580
+ + + C C K F+ L++H RTHT EKPYKC CG F+ + L+ H++
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+CP C K+F + ++L H + H + + C C K F+ +L RH RTH N+K
Sbjct: 34 KCPECGKSFSQSSDLQKHQR----THTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKH--SHSGQY- 337
C CG S L+ H R GE K C C + +KH +H+G+
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYK------CPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 338 HVCPHCGKKFTRKAELQLHIK 358
+ CP CGK F+R L H +
Sbjct: 61 YKCPECGKSFSRSDHLSRHQR 81
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 339 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 398
+C CG+ FT+ L +H + H E+ Y C+ CHK F ++LR H +H+ EKP+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERT----HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 399 KCKDCGAAFNHNVSLKNHKN 418
KC++CG F + +L HK
Sbjct: 75 KCQECGKGFCQSRTLAVHKT 94
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 362 LKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
L + +K +IC++C + FT L H R HT+E+PY C C AF L++H+
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
++ F+C++C + FT L H RTHT+E+PY C +C F L++H+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYK 562
C C + F + L H + H + + C+ C+K F +L+ H H+ EKP+K
Sbjct: 20 CKFCGRHFTKSYNLLIHERT----HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 563 CV-CGLGFNFNVSLKNHKQKCSVFLLTESMNSVS 595
C CG GF + +L HK ++ + T S + S
Sbjct: 76 CQECGKGFCQSRTLAVHK---TLHMQTSSPTAAS 106
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 399
C CGK F R + L H+ L H + Y C+YC K F + +++H +HT EKP+K
Sbjct: 4 CKICGKSFKRSSTLSTHL----LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 400 CKDCGAAFNHNVSLKNH 416
C+ CG AF+ + +L H
Sbjct: 60 CQVCGKAFSQSSNLITH 76
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
C C K+F R + LS H+ + H + + C+YC K F +K+H HT EKP
Sbjct: 2 FDCKICGKSFKRSSTLSTHL----LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 561 YKC-VCGLGFNFNVSLKNHKQK 581
+KC VCG F+ + +L H +K
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRK 79
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 19/99 (19%)
Query: 369 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYE 428
++ C+ C K F + L H+ +H++ +PY C+ CG F+ +K H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH------------ 48
Query: 429 TYLKHLKTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDH 467
T++ H E + C +CG ++ S L H + H
Sbjct: 49 TFI-------HTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 532 TFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+F C+ C K F L H+ H++ +PY C CG F+ +K H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
EK Y C C K F+ + L +H RVHT EKPYKC +CG AF+ N L NH+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNHKQ 580
+ C C K F+ L +H R HT EKPYKC+ CG F+ N L NH++
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTN 394
C CGK F+R + L H + H EK Y C C K F+ + L H R+HT+
Sbjct: 17 CVECGKAFSRSSILVQHQR----VHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 331 HSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRH 388
H+H + HVC CGK F ++L+ H L H EK + C + C K F+ LR H
Sbjct: 28 HTHGPRVHVCAECGKAFVESSKLKRH----QLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Query: 389 MRVHTNEKPYKCK--DCGAAFNHNVSLKNH 416
+R+HT ++PY C C F + +LK+H
Sbjct: 84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 339 VCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
CPH C K F + ++ H L + ++C C K F + L+RH VHT EK
Sbjct: 7 ACPHKGCTKMFRDNSAMRKH-----LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 397 PYKC--KDCGAAFNHNVSLKNH 416
P++C + CG F+ + +L+ H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTH 83
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 501 LQCPH--CPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNE 558
+ CPH C K F + + H+ H R VC C K F LKRH HT E
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLH----THGPR-VHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 559 KPYKCV---CGLGFNFNVSLKNH 578
KP++C CG F+ + +L+ H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTH 83
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEY--CNKEFTFLQYLKRHMRTHTNEKP 560
C C K F ++L H + H + F C + C K F+ L+ H+R HT ++P
Sbjct: 37 CAECGKAFVESSKLKRH----QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92
Query: 561 YKCV---CGLGFNFNVSLKNH 578
Y C C F + +LK+H
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSH 113
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F+R AEL HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSRSAELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 396 KPYKCKDCGAAFNHNVSLKNH 416
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F R EL+ HI+ H ++ F C C + F+ +L H+RTHT EKP
Sbjct: 7 CPVESCDRRFSRSAELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 561 YKC-VCGLGFNFNVSLKNH 578
+ C +CG F + K H
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + +L RH+ +H GQ F+CR+C + D L HI++
Sbjct: 4 PYACPVESCDRRFSRSAELTRHI---RIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRV 300
G E C CG K H ++
Sbjct: 58 TG--EKPFACDICGRKFARSDERKRHTKI 84
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 319 SAEVV-HLAIHKKHSHSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCH 376
SAE+ H+ IH +GQ C C + F+R L HI+ H EK + C+ C
Sbjct: 19 SAELTRHIRIH-----TGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICG 69
Query: 377 KEFTFYNYLRRHMRVHTNEK 396
++F + +RH ++H +K
Sbjct: 70 RKFARSDERKRHTKIHLRQK 89
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
QC C + F R L+ HI+ H + F C+ C ++F KRH + H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 292 STLKNHVRVEHGENQAKRKEKKICDICS---AEVVHLAIHKKHSHSGQY-HVCPHCGKKF 347
+ L H+R+ G+ + C IC + HL H + +H+G+ C CG+KF
Sbjct: 20 AELTRHIRIHTGQKPFQ------CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKF 72
Query: 348 TRKAELQLHIKGIHLKHQ 365
R E + H K IHL+ +
Sbjct: 73 ARSDERKRHTK-IHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F+R A+L HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSRSADLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 396 KPYKCKDCGAAFNHNVSLKNH 416
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F R +L+ HI+ H ++ F C C + F+ +L H+RTHT EKP
Sbjct: 7 CPVESCDRRFSRSADLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 561 YKC-VCGLGFNFNVSLKNH 578
+ C +CG F + K H
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + L RH+ +H GQ F+CR+C + D L HI++
Sbjct: 4 PYACPVESCDRRFSRSADLTRHI---RIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRV 300
G E C CG K H ++
Sbjct: 58 TG--EKPFACDICGRKFARSDERKRHTKI 84
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 333 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
H+GQ C C + F+R L HI+ H EK + C+ C ++F + +RH ++
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 392 HTNEK 396
H +K
Sbjct: 85 HLRQK 89
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
QC C + F R L+ HI+ H + F C+ C ++F KRH + H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 292 STLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRK 350
+ L H+R+ G+ K + +IC + HL H + +H+G+ C CG+KF R
Sbjct: 20 ADLTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARS 75
Query: 351 AELQLHIKGIHLKHQ 365
E + H K IHL+ +
Sbjct: 76 DERKRHTK-IHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F+R EL HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 396 KPYKCKDCGAAFNHNVSLKNH 416
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F R EL+ HI+ H ++ F C C + F+ +L H+RTHT EKP
Sbjct: 7 CPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 561 YKC-VCGLGFNFNVSLKNH 578
+ C +CG F + K H
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + D+L RH+ +H GQ F+CR+C + D L HI++
Sbjct: 4 PYACPVESCDRRFSRSDELTRHI---RIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRV 300
G E C CG K H ++
Sbjct: 58 TG--EKPFACDICGRKFARSDERKRHTKI 84
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 333 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
H+GQ C C + F+R L HI+ H EK + C+ C ++F + +RH ++
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 392 HTNEK 396
H +K
Sbjct: 85 HLRQK 89
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
QC C + F R L+ HI+ H + F C+ C ++F KRH + H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 41/120 (34%), Gaps = 34/120 (28%)
Query: 246 PYEFKCRVCDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGEN 305
PY CD + + D+L RHI+ G + C C L H+R GE
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 306 QAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQ 365
CDIC G+KF R E + H K IHL+ +
Sbjct: 62 PF------ACDIC-------------------------GRKFARSDERKRHTK-IHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F+R EL HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 4 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 396 KPYKCKDCGAAFNHNVSLKNH 416
KP+ C CG F + K H
Sbjct: 60 KPFACDICGRKFARSDERKRH 80
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F R EL+ HI+ H ++ F C C + F+ +L H+RTHT EKP
Sbjct: 6 CPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 561 YKC-VCGLGFNFNVSLKNH 578
+ C +CG F + K H
Sbjct: 62 FACDICGRKFARSDERKRH 80
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + D+L RH+ +H GQ F+CR+C + D L HI++
Sbjct: 3 PYACPVESCDRRFSRSDELTRHI---RIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTH 56
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRV 300
G E C CG K H ++
Sbjct: 57 TG--EKPFACDICGRKFARSDERKRHTKI 83
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 333 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
H+GQ C C + F+R L HI+ H EK + C+ C ++F + +RH ++
Sbjct: 28 HTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKI 83
Query: 392 HTNE 395
H +
Sbjct: 84 HLRQ 87
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNE 558
QC C + F R L+ HI+ H + F C+ C ++F KRH + H +
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 341 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPY 398
P C K++ + + LQ+H + KH EK Y C++ C + F+ + L+RH R HT KP+
Sbjct: 12 PGCNKRYFKLSHLQMHSR----KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 399 KCKDCGAAFNHNVSLKNH 416
+CK C F+ + LK H
Sbjct: 68 QCKTCQRKFSRSDHLKTH 85
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 321 EVVHLAIH-KKHSHSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKE 378
++ HL +H +KH+ Y C ++F+R +L+ H + +H K + C+ C ++
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR----RHTGVKPFQCKTCQRK 75
Query: 379 FTFYNYLRRHMRVHTNEKPYKCK--DCGAAFNHNVSLKNHKN 418
F+ ++L+ H R HT EKP+ C+ C F + L H N
Sbjct: 76 FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 506 CPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C + F R +L H + +H + F C+ C ++F+ +LK H RTHT EKP+ C
Sbjct: 44 CERRFSRSDQLKRHQR----RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 530 RQTFVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKC---VCGLGFNFNVSLKNHKQK 581
++ F+C Y CNK + L +L+ H R HT EKPY+C C F+ + LK H+++
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F+R EL HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 396 KPYKCKDCGAAFNHNVSLKNH 416
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F R EL+ HI+ H ++ F C C + F+ +L H+RTHT EKP
Sbjct: 7 CPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 561 YKC-VCGLGFNFNVSLKNH 578
+ C +CG F + K H
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + D+L RH+ +H GQ F+CR+C + D L HI++
Sbjct: 4 PYACPVESCDRRFSRSDELTRHI---RIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRV 300
G E C CG K H ++
Sbjct: 58 TG--EKPFACDICGRKFARSDERKRHTKI 84
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 333 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
H+GQ C C + F+R L HI+ H EK + C+ C ++F + +RH ++
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 392 H 392
H
Sbjct: 85 H 85
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTH 555
QC C + F R L+ HI+ H + F C+ C ++F KRH + H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+K Y C+ C F + L H VHT EKPY+C CGA FN +LK H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ + C+ C F + L H HT EKPY+C +CG FN +LK H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
C C F K L H K +H EK Y C C +F L+ H R+H+ EKP
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTG---EKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+C C +F K L++H K +H + + C C +F LK H R H+ EKP
Sbjct: 19 KCDRCQASFRYKGNLASH-KTVHTG---EKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 487 HINGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEY--CNKEFTF 544
H+ G ++ H ++ +CP K+F K +L NHI+ H + F C + C K F
Sbjct: 49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR----VHTGEKPFPCPFPGCGKIFAR 104
Query: 545 LQYLKRHMRTHTNEKPYKC 563
+ LK H RTHT EKP+KC
Sbjct: 105 SENLKIHKRTHTGEKPFKC 123
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 310 KEKKICDICSAEVVHLAIHKKHSHSGQ---------YHVCPHCGKKFTRKAELQLHIKGI 360
+ KK CD + + L H H G + CP GK F K +L HI+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-- 83
Query: 361 HLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH 416
H EK + C + C K F L+ H R HT EKP+KC + C F ++ K H
Sbjct: 84 --VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 42/154 (27%)
Query: 252 RVCDWKLNSYDKLLRHIKSDH-GGYETSS-LCY--HC---GYYSKNRSTLKNHVRVEHGE 304
+ CD ++ +L+ H+ +H GG E ++ +CY C G K + L NH+RV GE
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 305 NQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKH 364
C P CGK F R L++H + H
Sbjct: 89 KPFP------CPF-----------------------PGCGKIFARSENLKIHKR----TH 115
Query: 365 QLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEK 396
EK + CE+ C + F + ++HM VHT++K
Sbjct: 116 TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 506 CPKTFPRKTELSNHIKGIHMKHELRQTFVC--EYCNKE---FTFLQYLKRHMRTHTNEKP 560
C +TF EL H+ H+ + VC E C +E F L H+R HT EKP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 561 YKCV---CGLGFNFNVSLKNHKQ 580
+ C CG F + +LK HK+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKR 113
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 453 FSAKRSTLAHHIQDHIQPRMKQKQIC--EICCAE----------VYHINGHIKDKHSGFF 500
FS + H +H+ + +C E C E V HI H +K F
Sbjct: 35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK--PFP 92
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEY--CNKEFTFLQYLKRHMRTHTNE 558
P C K F R L H + H + F CE+ C++ F K+HM HT++
Sbjct: 93 CPFPGCGKIFARSENLKIHKR----THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Query: 559 K 559
K
Sbjct: 149 K 149
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 332 SHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
S S H C CGK F+RK +L+ H++ H K Y C+ C + L +H+R+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC----HTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Query: 392 HTNEKPYKCKDCGAAFNHN----VSLKNHKNSSCP 422
H++E+P+KC+ C A ++ V L++H S P
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGP 93
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYL 431
CE C K F+ + L+ HMR HT KPYKCK C A + SL H +++S E
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-----RIHSDERPF 65
Query: 432 KHLKTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDHI 468
K C IC + S S L H++ H
Sbjct: 66 K--------------CQICPYASRNSSQLTVHLRSHT 88
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 208 GQFSPYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRH 267
G P+ KC VC + DKL HM H G PY KC+ CD+ L +H
Sbjct: 4 GSSGPH--KCEVCGKCFSRKDKLKTHM---RCHTG-VKPY--KCKTCDYAAADSSSLNKH 55
Query: 268 IK--SDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGEN 305
++ SD ++ C C Y S+N S L H+R G++
Sbjct: 56 LRIHSDERPFK----CQICPYASRNSSQLTVHLRSHTGDS 91
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
CE C K F+ LK HMR HT KPYKC C + SL H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPY 561
+C C K F RK +L H++ H + + C+ C+ L +H+R H++E+P+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC----HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 562 KC 563
KC
Sbjct: 66 KC 67
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 215 FKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHGG 274
+KC+ CD+ L +H+ +H + FKC++C + + +L H++S G
Sbjct: 37 YKCKTCDYAAADSSSLNKHL---RIHSDE---RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Query: 275 YETSS 279
SS
Sbjct: 91 SGPSS 95
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 242 GQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVE 301
G P+ KC VC + DKL H++ H G + C C Y + + S+L H+R+
Sbjct: 4 GSSGPH--KCEVCGKCFSRKDKLKTHMRC-HTGVKPYK-CKTCDYAAADSSSLNKHLRIH 59
Query: 302 HGENQAKRKEKKICDICSAEVVHLAIHKKHSHSG 335
E K +IC S L +H + SH+G
Sbjct: 60 SDERPFK---CQICPYASRNSSQLTVHLR-SHTG 89
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 324 HLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYN 383
+L +H + + CP CGK + RK L H + + ++ E+ + C C + F
Sbjct: 22 YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQVFTCSVCQETFRRRM 80
Query: 384 YLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
LR HM HT E PYKC C F L++H
Sbjct: 81 ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSC 421
C CHK+F YL+ H R HT EKP++C CG + +L H+ +C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+CP C K + RK L H + + + Q F C C + F L+ HM +HT E P
Sbjct: 36 FECPKCGKCYFRKENLLEH-EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 561 YKC 563
YKC
Sbjct: 95 YKC 97
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCV-CG 566
C C+K+F YLK H R HT EKP++C CG
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCG 42
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 334 SGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM 389
S Q C C + F R+ EL+LH+ + H E Y C C ++F L+ HM
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHM----VSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F++ L HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 396 KPYKCKDCGAAFNHNVSLKNH 416
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F + L+ HI+ H ++ F C C + F+ +L H+RTHT EKP
Sbjct: 7 CPVESCDRRFSQSGSLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 561 YKC-VCGLGFNFNVSLKNH 578
+ C +CG F + K H
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + L RH+ +H GQ F+CR+C + D L HI++
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHI---RIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRV 300
G E C CG K H ++
Sbjct: 58 TG--EKPFACDICGRKFARSDERKRHTKI 84
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 333 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
H+GQ C C + F+R L HI+ H EK + C+ C ++F + +RH ++
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 392 HTNEK 396
H +K
Sbjct: 85 HLRQK 89
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
QC C + F R L+ HI+ H + F C+ C ++F KRH + H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 292 STLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRK 350
+L H+R+ G+ K + +IC + HL H + +H+G+ C CG+KF R
Sbjct: 20 GSLTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARS 75
Query: 351 AELQLHIKGIHLKHQ 365
E + H K IHL+ +
Sbjct: 76 DERKRHTK-IHLRQK 89
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 532 TFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
+FVCE C + F ++LKRH R+HTNEKPY C +C F L H QK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 369 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+++CE C + F +L+RH R HTNEKPY C C AF L H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 339 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRH 388
VC C + F R+ L+ H + H EK Y C C++ FT + L RH
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS----HTNEKPYPCGLCNRAFTRRDLLIRH 49
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F++K L HI+ H +K + C C + F+ + L +H+R HT E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR----IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 396 KPYKCKDCGAAF 407
KP+ C CG F
Sbjct: 61 KPFACDICGRKF 72
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F +KT L HI+ H ++ F C C + F+ L +H+RTHT EKP
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR----IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 561 YKC-VCGLGF 569
+ C +CG F
Sbjct: 63 FACDICGRKF 72
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 366 LEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+E+ Y C E C + F+ L H+R+HT +KP++C+ C F+ + L H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH 53
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 488 INGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQY 547
++ HI+ QC C + F + T L+ HI+ H + F C+ C ++F L
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR----THTGEKPFACDICGRKFATLHT 77
Query: 548 LKRHMRTHTNEK 559
RH + H +K
Sbjct: 78 RDRHTKIHLRQK 89
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 333 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
H+GQ C C + F++ L HI+ H EK + C+ C ++F + RH ++
Sbjct: 29 HTGQKPFQCRICMRNFSQHTGLNQHIR----THTGEKPFACDICGRKFATLHTRDRHTKI 84
Query: 392 HTNEK 396
H +K
Sbjct: 85 HLRQK 89
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + L H+ +H GQ F+CR+C + + L +HI++
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHI---RIHTGQ---KPFQCRICMRNFSQHTGLNQHIRTH 57
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRV 300
G E C CG T H ++
Sbjct: 58 TG--EKPFACDICGRKFATLHTRDRHTKI 84
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F+ + L HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 396 KPYKCKDCGAAFNHNVSLKNH 416
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F + L+ HI+ H ++ F C C + F+ +L H+RTHT EKP
Sbjct: 7 CPVESCDRRFSDSSNLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 561 YKC-VCGLGFNFNVSLKNH 578
+ C +CG F + K H
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + L RH+ +H GQ F+CR+C + D L HI++
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHI---RIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRV 300
G E C CG K H ++
Sbjct: 58 TG--EKPFACDICGRKFARSDERKRHTKI 84
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 333 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
H+GQ C C + F+R L HI+ H EK + C+ C ++F + +RH ++
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 392 HTNEK 396
H +K
Sbjct: 85 HLRQK 89
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
QC C + F R L+ HI+ H + F C+ C ++F KRH + H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 343 CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKD 402
CGK FT K++ H+ +HL + Y C C K+F ++L HM++HT KPY+C
Sbjct: 15 CGKSFTHKSQRDRHMS-MHLG---LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 403 CGAAFNHNVSLKNHKNSSCPKLY 425
C F S H +SC K Y
Sbjct: 71 CAKRFMWRDSFHRHV-TSCTKSY 92
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 506 CPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-V 564
C K+F K++ H+ M LR + C C K+F +L HM+ HT KPY+C +
Sbjct: 15 CGKSFTHKSQRDRHMS---MHLGLR-PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 565 CGLGFNFNVSLKNHKQKCS 583
C F + S H C+
Sbjct: 71 CAKRFMWRDSFHRHVTSCT 89
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 205 IHLGQFSPYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKL 264
+HLG PY C VC K L+ HM ++H G PYE C +C + D
Sbjct: 31 MHLG-LRPY--GCGVCGKKFKMKHHLVGHM---KIHTG-IKPYE--CNICAKRFMWRDSF 81
Query: 265 LRHIKSDHGGYETS 278
RH+ S YE +
Sbjct: 82 HRHVTSCTKSYEAA 95
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM 389
C CGKKF K L H+K H K Y C C K F + + RH+
Sbjct: 40 CGVCGKKFKMKHHLVGHMK----IHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+ CP C ++F++K L HI+ H +K + C C + F+ L H+R HT E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR----IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 396 KPYKCKDCGAAF 407
KP+ C CG F
Sbjct: 61 KPFACDICGRKF 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C + F +KT L HI+ H ++ F C C + F+ L H+RTHT EKP
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR----IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 561 YKC-VCGLGF 569
+ C +CG F
Sbjct: 63 FACDICGRKF 72
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 366 LEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+E+ Y C E C + F+ L H+R+HT +KP++C+ C F+ SL H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH 53
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 333 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 391
H+GQ C C + F+++A L HI+ H EK + C+ C ++F + RH ++
Sbjct: 29 HTGQKPFQCRICMRNFSQQASLNAHIR----THTGEKPFACDICGRKFATLHTRTRHTKI 84
Query: 392 HTNEK 396
H +K
Sbjct: 85 HLRQK 89
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 488 INGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQY 547
++ HI+ QC C + F ++ L+ HI+ H + F C+ C ++F L
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR----THTGEKPFACDICGRKFATLHT 77
Query: 548 LKRHMRTHTNEK 559
RH + H +K
Sbjct: 78 RTRHTKIHLRQK 89
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PY CD + + L H+ +H GQ F+CR+C + L HI++
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHI---RIHTGQ---KPFQCRICMRNFSQQASLNAHIRTH 57
Query: 272 HGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKE 311
G E C CG + +TL H R H + ++K+
Sbjct: 58 TG--EKPFACDICG---RKFATL--HTRTRHTKIHLRQKD 90
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ Y C+ C K F+ + L +H R HT EKPYKC +CG AF L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
R+ + C+ C K F+ L +H RTHT EKPYKC CG F L H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
C CGK F+ ++L H + H EK Y C+ C K F ++L H RVHT P
Sbjct: 21 CDECGKSFSHSSDLSKHRR----THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+C C K+F ++LS H + H + + C+ C K F +L H R HT P
Sbjct: 20 KCDECGKSFSHSSDLSKHRR----THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 338 HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHT 393
H C + CGK +T+ + L+ H++ H EK Y C++ C +F + L RH R HT
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 394 NEKPYKCKDCGAAFNHNVSLKNH 416
+P++C+ C AF+ + L H
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALH 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 532 TFVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKC---VCGLGFNFNVSLKNHKQK 581
T C+Y C K +T +LK H+RTHT EKPY C CG F + L H +K
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 369 TYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH 416
T+ C+Y C K +T ++L+ H+R HT EKPY C CG F + L H
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 506 CPKTFPRKTELSNHIKGIHMKHELRQTFVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKC 563
C KT+ + + L H++ H + + C++ C +F L RH R HT +P++C
Sbjct: 14 CGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 69
Query: 564 V-CGLGFNFNVSLKNHKQK 581
C F+ + L H ++
Sbjct: 70 QKCDRAFSRSDHLALHMKR 88
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 343 CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVH 392
CG KF R EL H + KH + + C+ C + F+ ++L HM+ H
Sbjct: 44 CGWKFARSDELTRHYR----KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 482 CAEVYHINGHIKD---KHSG---FFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVC 535
C + Y + H+K H+G + C F R EL+ H + KH + F C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQC 69
Query: 536 EYCNKEFTFLQYLKRHMRTH 555
+ C++ F+ +L HM+ H
Sbjct: 70 QKCDRAFSRSDHLALHMKRH 89
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 205 IHLGQFSPYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKL 264
H G+ PY C WK D+L RH H G F+C+ CD + D L
Sbjct: 30 THTGE-KPYHCDWDGCGWKFARSDELTRHY---RKHTGH---RPFQCQKCDRAFSRSDHL 82
Query: 265 LRHIK 269
H+K
Sbjct: 83 ALHMK 87
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 338 HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHT 393
H C + CGK +T+ + L+ H++ H EK Y C++ C +F + L RH R HT
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 394 NEKPYKCKDCGAAFNHNVSLKNH 416
+P++C+ C AF+ + L H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALH 84
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 532 TFVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKC---VCGLGFNFNVSLKNHKQK 581
T C+Y C K +T +LK H+RTHT EKPY C CG F + L H +K
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 369 TYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH 416
T+ C+Y C K +T ++L+ H+R HT EKPY C CG F + L H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 506 CPKTFPRKTELSNHIKGIHMKHELRQTFVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKC 563
C KT+ + + L H++ H + + C++ C +F L RH R HT +P++C
Sbjct: 13 CGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 68
Query: 564 V-CGLGFNFNVSLKNHKQK 581
C F+ + L H ++
Sbjct: 69 QKCDRAFSRSDHLALHMKR 87
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 308 KRKEKKICDICS-----AEVVHLAIHKKHSHSGQ--YHV-CPHCGKKFTRKAELQLHIKG 359
KR CD + HL H + +H+G+ YH CG KF R EL H +
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR- 58
Query: 360 IHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVH 392
KH + + C+ C + F+ ++L HM+ H
Sbjct: 59 ---KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 482 CAEVY----HINGHIKDKHSG---FFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFV 534
C + Y H+ H++ H+G + C F R EL+ H + KH + F
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQ 67
Query: 535 CEYCNKEFTFLQYLKRHMRTH 555
C+ C++ F+ +L HM+ H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 205 IHLGQFSPYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKL 264
H G+ PY C WK D+L RH H G F+C+ CD + D L
Sbjct: 29 THTGE-KPYHCDWDGCGWKFARSDELTRHY---RKHTGH---RPFQCQKCDRAFSRSDHL 81
Query: 265 LRHIK 269
H+K
Sbjct: 82 ALHMK 86
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 315 CDICSA---EVVHLAIHKKHSHSGQ-YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTY 370
C+IC +V HL HK SHSG+ + CP CG +F RK + H++ + K Y
Sbjct: 10 CEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVR--SHDGSVGKPY 66
Query: 371 ICEYCHKEFTFYNYLRRHMR-VHTN 394
IC+ C K F+ ++L H++ VH+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 534 VCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGF 569
CE C K F + +L RH +H+ EKPY C VCGL F
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF 45
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 478 CEICCA---EVYHINGHIKDKHSGF-FLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTF 533
CEIC +VYH+N H K HSG CP C F RK +S H++ + + +
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVR--SHDGSVGKPY 66
Query: 534 VCEYCNKEFTFLQYLKRHMR 553
+C+ C K F+ +L H++
Sbjct: 67 ICQSCGKGFSRPDHLNGHIK 86
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS------------ 419
CE C K F +L RH H+ EKPY C CG F + H S
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 420 SCPKLYSYETYLK-HLKTNHHG 440
SC K +S +L H+K H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 421 CPKLYSYETYLKHLKTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDHIQPRMKQKQICEI 480
C K++ +L K +H G E C +CG ++ +++H++ H + + IC+
Sbjct: 13 CGKIFRDVYHLNRHKLSHSG-EKPYSCPVCGLRFKRKDRMSYHVRSH-DGSVGKPYICQS 70
Query: 481 CC---AEVYHINGHIKDKHSG 498
C + H+NGHIK HSG
Sbjct: 71 CGKGFSRPDHLNGHIKQVHSG 91
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 337 YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
Y++C C + + L+ H H EK Y C YC K F Y +H HT E+
Sbjct: 22 YYICIVCKRSYVCLTSLRRHFN----IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 397 PYKCKDCGAAFNHNVSLKNHKNS 419
Y+C CG +F + + +H S
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKS 100
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 500 FLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+ C C +++ T L H H + + C YC K F +Y +H HT E+
Sbjct: 22 YYICIVCKRSYVCLTSLRRHFN----IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 560 PYKCV-CGLGF 569
Y+C+ CG F
Sbjct: 78 RYQCLACGKSF 88
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
R ++C C + + L L+RH H+ EK Y C
Sbjct: 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPC 53
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKN 418
K + C C + F+ ++L H+R HT EKP+ C CG F + K H++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ F C C + F+ +L H+RTHT EKP+ C +CG F + K H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRH 551
QC C + F R L+ HI+ H + F C+ C ++F KRH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRH 50
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y+C+YC K F L RH R+HT EKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ +VC+YC K F L RH R HT EKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
C YC K F YL H+R HT EKPYKC+ C A SL+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
C YC K F YL H+RTHT EKPYKC C SL+ H ++
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER 54
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVH 392
C +CGK F L +H++ H EK Y CE+C LR H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLR----THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 528 ELRQTFVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKCV---CGLGFNFNVSLKNHKQK 581
E R+ C+Y C K +T +LK H+RTHT EKPYKC C F + L H +K
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 504 PHCPKTFPRKTELSNHIKGIHMKHELRQTFVC--EYCNKEFTFLQYLKRHMRTHTNEKPY 561
P C K + + + L H++ H + + C E C+ F L RH R HT KP+
Sbjct: 21 PGCTKVYTKSSHLKAHLR----THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 562 KC-VCGLGFNFNVSLKNHKQK 581
+C VC F+ + L H ++
Sbjct: 77 QCGVCNRSFSRSDHLALHMKR 97
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 366 LEKTYI--CEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH 416
LEK I C+Y C K +T ++L+ H+R HT EKPYKC + C F + L H
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 482 CAEVYHINGHIKD---KHSG---FFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVC 535
C +VY + H+K H+G + C F R EL+ H + KH + F C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR----KHTGAKPFQC 78
Query: 536 EYCNKEFTFLQYLKRHMRTHTN 557
CN+ F+ +L HM+ H N
Sbjct: 79 GVCNRSFSRSDHLALHMKRHQN 100
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 205 IHLGQFSPYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKL 264
H G+ PY+ CDW+ D+L RH H G F+C VC+ + D L
Sbjct: 39 THTGE-KPYKCTWEGCDWRFARSDELTRHY---RKHTGA---KPFQCGVCNRSFSRSDHL 91
Query: 265 LRHIK 269
H+K
Sbjct: 92 ALHMK 96
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 343 CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTN 394
C +F R EL H + KH K + C C++ F+ ++L HM+ H N
Sbjct: 53 CDWRFARSDELTRHYR----KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 332 SHSGQ-YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM 389
+H+G+ + C HC K F +K L +H K H + + ++C C K FT N + RH
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHM 552
C HC KTF +K L H K H + + FVC C K FT + RH
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHGYEVSNLCYI 449
R HT EKPY C C F L H K Y ++ + +C
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHF-----KRYHDPNFV----------PAAFVCSK 52
Query: 450 CGFFSAKRSTLAHHIQDHIQP 470
CG +R+T+A H + P
Sbjct: 53 CGKTFTRRNTMARHADNCAGP 73
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 38/178 (21%)
Query: 248 EFKCRV--CDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGEN 305
E CR C + +S ++L+ HI S+H E H G S+ K +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYML----- 55
Query: 306 QAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPH--CGKKFTRKAELQLHIKGIHLK 363
VVH+ H + H C C K ++R L+ H++
Sbjct: 56 ----------------VVHMRRHT----GEKPHKCTFEGCRKSYSRLENLKTHLRS---- 91
Query: 364 HQLEKTYICEY--CHKEFTFYNYLRRHM-RVHTNEKPYKCK--DCGAAFNHNVSLKNH 416
H EK Y+CE+ C K F+ + +H R H+NEKPY CK C + SL+ H
Sbjct: 92 HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 22/112 (19%)
Query: 345 KKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC-- 400
+ F + L +H++ +H EK + C E C K ++ L+ H+R HT EKPY C
Sbjct: 47 RPFKAQYMLVVHMR----RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH 102
Query: 401 KDCGAAFNHNVSLKNHKNSS-------------CPKLYSYETYL-KHLKTNH 438
+ C AF++ H+N + C K Y+ + L KH+KT H
Sbjct: 103 EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 485 VYHING-HIKDKHSGFFLQCPHCPKTF-PRKTELSNHIKGIHMK-HELRQTFVC--EYCN 539
V+HIN HI + F C + P K + ++ +HM+ H + C E C
Sbjct: 20 VHHINSEHIHGERKEFVCHWGGCSRELRPFKAQ---YMLVVHMRRHTGEKPHKCTFEGCR 76
Query: 540 KEFTFLQYLKRHMRTHTNEKPYKC 563
K ++ L+ LK H+R+HT EKPY C
Sbjct: 77 KSYSRLENLKTHLRSHTGEKPYMC 100
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 506 CPKTFPRKTELSNHIKGIHMKHELRQTFVCEY--CNKEFTFLQYLKRHM-RTHTNEKPYK 562
C K++ R L H++ H + ++CE+ C+K F+ +H RTH+NEKPY
Sbjct: 75 CRKSYSRLENLKTHLRS----HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Query: 563 C 563
C
Sbjct: 131 C 131
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 343 CGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
CG + + +LQ H+ KH EK + C E C K FT ++L RH HT EK + C
Sbjct: 11 CGAAYNKNWKLQAHLS----KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66
Query: 401 KD--CGAAFNHNVSLKNHKN 418
C F ++K H N
Sbjct: 67 DSDGCDLRFTTKANMKKHFN 86
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 506 CPKTFPRKTELSNHIKGIHMKHELRQTFVC--EYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C + + +L H+ KH + F C E C K FT L +L RH THT EK + C
Sbjct: 11 CGAAYNKNWKLQAHLS----KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66
Query: 564 ---VCGLGFNFNVSLKNH 578
C L F ++K H
Sbjct: 67 DSDGCDLRFTTKANMKKH 84
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 343 CGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
CG + + +LQ H+ KH EK + C E C K FT ++L RH HT EK + C
Sbjct: 20 CGAAYNKNWKLQAHL----CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Query: 401 KD--CGAAFNHNVSLKNHKN 418
C F ++K H N
Sbjct: 76 DSDGCDLRFTTKANMKKHFN 95
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 506 CPKTFPRKTELSNHIKGIHMKHELRQTFVC--EYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C + + +L H+ KH + F C E C K FT L +L RH THT EK + C
Sbjct: 20 CGAAYNKNWKLQAHL----CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Query: 564 ---VCGLGFNFNVSLKNH 578
C L F ++K H
Sbjct: 76 DSDGCDLRFTTKANMKKH 93
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 343 CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC 400
C +FT KA ++ H H Y+C + C K F +N L+ H HT + PY+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKIC--VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 401 --KDCGAAFNHNVSLKNH----------KNSSCPKLY-SYETYLKHLKTNH 438
+ C F+ LK H K+ SC + ++ YLKH+ H
Sbjct: 138 PHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 532 TFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+FVCE C + F +YLKRH R+HTNEK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 369 TYICEYCHKEFTFYNYLRRHMRVHTNEK 396
+++CE C + F YL+RH R HTNEK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+ F CEYCNK F F L+ H+R HTNEK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
K + CEYC+K F F + L+ H+R+HTNEK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C KEF+ ++L+ H RVHT EKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ C+ C KEF+ +L+ H R HT EKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 368 KTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ Y C E C + F+ + L RH+R+HT +KP++C+ C F+ + L H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 207 LGQFSPYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLR 266
+ + PY CD + + D+L RH+ +H GQ F+CR+C + D L
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHI---RIHTGQ---KPFQCRICMRNFSRSDHLTT 67
Query: 267 HIKS 270
HI++
Sbjct: 68 HIRT 71
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 338 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHT 393
+ CP C ++F+R EL HI+ H +K + C C + F+ ++L H+R HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 536 EYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
E C++ F+ L RH+R HT +KP++C +C F+ + L H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 503 CP--HCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHT 556
CP C + F R EL+ HI+ H ++ F C C + F+ +L H+RTHT
Sbjct: 22 CPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK YIC C K F ++L RH R+HT EKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ ++C C K F +L RH R HT EKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ CHK F + + L H R+HT EKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C+ C+K F + L H R HT EKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 532 TFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+FVCE C + F ++LKRH R+HTNEK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 369 TYICEYCHKEFTFYNYLRRHMRVHTNEK 396
+++CE C + F +L+RH R HTNEK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 366 LEKTYICEYCHKEFTFYNYLRRHMR-VHTNEKPYKCK 401
+ K YIC+ C K F+ ++L H++ VHT+E+P+KC+
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 529 LRQTFVCEYCNKEFTFLQYLKRHMR-THTNEKPYKC 563
+ + ++C+ C K F+ +L H++ HT+E+P+KC
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 335 GQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYI 371
G+ ++C CGK F+R L HIK +H + K +
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + CE C K FT ++L H RVHT EKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
F CE C K FT +L H R HT EKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 532 TFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+FVCE C + F + LKRH R+HTNEK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 369 TYICEYCHKEFTFYNYLRRHMRVHTNEK 396
+++CE C + F L+RH R HTNEK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 341 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICE--YCHKEFTFYNYLRRHMRVHTNEKPY 398
P CG+ F+ + L H K +H +K++ C C K F F +L+ HM++H++ + Y
Sbjct: 13 PGCGRIFSNRQYLNHHKK---YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 399 KCKDCGAA 406
C+ G +
Sbjct: 70 ICEFSGPS 77
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 497 SGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCE--YCNKEFTFLQYLKRHMRT 554
SG P C + F + L++H K +H +++F C C K F F ++LK HM+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKK---YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 555 HTNEKPYKC 563
H++ + Y C
Sbjct: 63 HSDTRDYIC 71
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F +YL RH R+HT EKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG F HN L H+
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQ 32
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C C K F YL RH R HT EKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK YIC C K FT + L +H ++HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ ++C C K FT L +H + HT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNH----NVSLKNHKN 418
E+ + C +C K + + L RH R H +P C +CG F N LK H+N
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCV-CGLGFN----FNVSLKNHKQK 581
+ F C +C K + L RH R H +P C CG F N LK H+ K
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F+ + L RH R+HT EKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C C K F+ L RH R HT EKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG AF+ L H+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQ 32
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F+ +YL HMR H+ EKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C C K F+ YL HMRTH+ EKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 332 SHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM-R 390
S S + H+CP CG+ F K + H++ +H + + C+YC F L RH+ +
Sbjct: 23 SASAECHLCPVCGESFASKGAQERHLRLLHAA----QVFPCKYCPATFYSSPGLTRHINK 78
Query: 391 VHTNE 395
H +E
Sbjct: 79 CHPSE 83
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHM-RTHTNE 558
CP C ++F K H++ +H Q F C+YC F L RH+ + H +E
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAA----QVFPCKYCPATFYSSPGLTRHINKCHPSE 83
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 370 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCP 422
++C C + F RH+R+ + + CK C A F + L H N P
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP 81
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 478 CEIC--CAEVYHING----HIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIH 524
C +C C E + G H++ H+ C +CP TF L+ HI H
Sbjct: 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
E+ YIC C K FT + L +H ++HT EKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ ++C C K FT L +H + HT EKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + CE C K FT + L H RVHT EKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
F CE C K FT L H R HT EKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKP+KC++CG F N L +H+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQ 32
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y CE C K F + L+ H R+HT EKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPY C++CG AF H+ L+ H+
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQ 32
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + CE C K F L+ H R HT EKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C K F+ + L +H RVH+ EKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPY+C C AF+H+ SL H+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQ 32
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C+ C K F+ L +H R H+ EKP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 370 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 419
YICE C + L++H+R HT+ +PY C C +F +L H S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
++CE C LK+H+RTHT+ +PY C C F +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
K Y C C K F +YL HMR HT EKP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C C K F YL HMRTHT EKP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
K Y C C K F+ + L RH RVHT EKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ C C K F+ L RH R HT EKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K FT ++L RH RVHT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG F N L H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR 32
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C C K FT +L RH R HT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
K Y+C C K F+ Y+ L H +HT EKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
++C C K F+ L H HT EKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C C K F+ + L H R+HT EKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
F C C K F+ L H R HT EKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C K F+ +L +H RVHT EKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPY+CK+CG AF+ L H+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQ 32
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ C+ C K F+ +L +H R HT EKP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
EK Y C C K+F+ +YL H R+HT EK
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+ C C K+F+ YL H R HT EK
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C K F + + L +H RVH+ EKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C+ C K F + L +H R H+ EKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K FT ++L H R+HT EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNH 416
EKPYKC +CG F N L NH
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNH 31
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C C K FT +L H R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C K FT +L +H + HT EKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ C+ C+K FT +L +H +THT EKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K FT ++L RH +HT EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHKN 418
EKPYKC +CG F N L H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRG 33
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C C K FT +L RH HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
EK Y+C+ C K FT + L H RVHT E
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 393 TNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPY C++CG AF + L H+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHR 30
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNE 558
+VC+ C K FT L H R HT E
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNH 416
EKP+KCK+CG AF N+ L +H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASH 31
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C+ C K F +L H+R+HT EKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ F C+ C K F +L H+R HT EKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPY 561
R+ CE C K F + +L RH +H+ EKPY
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 365 QLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 398
+ K CE C K F +L RH H+ EKPY
Sbjct: 8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K FTF + L H VHT KP
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 393 TNEKPYKCKDCGAAFNHNVSLKNHKN 418
+ EKPY C +CG AF L HK
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKG 31
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
K++ C C + FT ++L +H R+HT EKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKP 560
C C + FT +L +H R HT EKP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C C K F+F++ L H R+HT E P
Sbjct: 8 EKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
EK Y C C K F +L +H+RVHT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNE 558
+ C C K F +L +H+R HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K FT ++L RH +HT EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHKN 418
EKPYKC +CG F N L H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRG 33
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 368 KTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNHKNS 419
+++IC + C K + ++L+ H R HT EKP+ C K C F + L H+ +
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 531 QTFVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKC 563
++ +C + C K + +LK H RTHT EKP+ C
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC 50
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 504 PHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEY--CNKEFTFLQYLKRHMRTH 555
P C KT+ + + L H + H + F C + C + F L RH RTH
Sbjct: 23 PGCGKTYFKSSHLKAHTR----THTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F+ + L H R HT EKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ C C K F+ L H RTHT EKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K FT + L H ++HT EKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C+ C K F + L RH VHT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ F C+ C K F L RH HT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F L +H R+HT EKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPY+C +CG AF +L H+
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQ 32
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
+K Y C C K FT ++L RH +HT EKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
++ + C C K FT +L RH HT EKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHKN 418
+KPYKC +CG F N L H+
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRG 33
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
EK++ C+ C K F + + LR H RVH EK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC+DCG +N ++L H+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQ 32
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG F N L NH+
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQ 32
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K FT ++L H R+HT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 315 CDICSAEVVHLAIHKKH---SHSGQYHV--CPHCGKKFTRKAELQLHIKGIH 361
C +CS H++ +H SH V CP C K+FTRK + H+K IH
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + CE C F LQ LK H+R HT P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y CE C F L+ H+R+HT P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNH 416
EKPY C+ CG F H +LK+H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSH 30
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C C K F+F + L H R+HT E P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKP 560
C C K F+F L H R HT E P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F+ + L +H ++HT EKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K FT + L H ++HT EKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPY+C +CG AF +L H+
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQ 32
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHKNS 419
EKPYKC DCG AF L H+ S
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQS 34
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 393 TNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPY+CK+CG +F+ SL H+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHE 30
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C K F+ L H R+HT P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
K Y+C +C ++F L+RH+R+HT EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
+K +C C K F + L +H R+H+ EKP
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
++ VC C K F L +H R H+ EKP
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C C K F+ + L +H R+HT EKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKP+ C DCG AF+ ++ L H+
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHR 32
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C K F ++L +H VH+ E+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C K F+ L H+RVHT P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNH 416
EKPY+C CG AF+ SL H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVH 30
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG AF N S H+
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQ 32
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F + +H R+HT ++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEK 396
C C K+FT L+RH+R+H+ EK
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEK 559
C C K+FT LKRH+R H+ EK
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C C K F+ +YL H + H EKP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ F C C K F+ YL H +TH EKP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
+K + C C K FT + L H R+HT EKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
++ F C C K FT L H R HT EKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F ++L RH +HT EKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG F N L H+
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQ 32
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F+ L H R+H+ +KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPY+C CG AF+H SL H+
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQ 32
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
+ + C C K F+ Q L H R H+ +KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F+ + L H +HT +KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPY+C CG AF+ SL H+
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQ 32
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
EK Y C C K FT+ + LR H + HT E+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC DCG +F L+ H+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQ 32
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 492 IKDKHSGFFLQCPHCPKTFPRKTELSNHIKGI--HMKHELRQTFVCEYCNKEFTFLQYLK 549
I DK S + CP C + RKT I+G+ HM++ ++ F C +C K+ L +K
Sbjct: 29 IVDKGS---VSCPTC-QAVGRKT-----IEGLKKHMENCKQEMFTCHHCGKQLRSLAGMK 79
Query: 550 RHMRTHTNEKP 560
H+ + N P
Sbjct: 80 YHVMANHNSLP 90
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C+ C K F+ L +H R+H+ EKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 393 TNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG AF +L H+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQ 32
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C C K + +L +H RVHT EKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKP+KC +CG ++N V L H+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQ 32
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
F C C K + +L +H R HT EKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F ++ L H +HT EKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG AF + +L H+
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQ 32
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
E+ + C C K F +L +H R+HT EKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 393 TNEKPYKCKDCGAAFNHNVSL----KNHKNSSCP 422
T EKPY+C +CG AF N L + H S P
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESGP 41
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG AF+ + L H+
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHR 32
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F + +L H R+HT +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
Length = 32
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 499 FFLQCPHCPKTFPRKTELSNHIK 521
+ CP CPK F R LS HIK
Sbjct: 1 YAFACPACPKRFMRSDALSKHIK 23
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 533 FVC--EYCNKEFTFLQYLKRHMRTHTNEK 559
F+C YC K FT L+RH RTHT EK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
+K Y+C C K F + L H R+HT E
Sbjct: 8 QKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
E +IC C K FT L H ++HT E+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
F+C C K FT L H + HT E+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EKT+ C C F+ + LR H VH EKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
E+ Y C C K F + L H R+HT EKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C C K F + L H R HT EKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
F C C K F L H RTHT EKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 370 YICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH--------- 416
Y+C + C K F +N L+ H HT + PY+C + C F+ LK H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 417 -KNSSCPKL-YSYETYLKHLKTNH 438
K+ SC + ++ YLKH+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F + L H R+HT E P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 365 QLEKTYICEYCHKEFTFYNYLRRHMRVHT 393
Q EK + C C K F+ YL +H R+HT
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC +CG AF SL H+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQ 32
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y C C K F + L H H+ EKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
EK + C C K F+F + L H R+HT E
Sbjct: 8 EKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHT 393
EK Y+C C K FTF + L H +HT
Sbjct: 8 EKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 393 TNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPY C DCG AF L H+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQ 30
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 338 HVCPHCGKKFTRKAELQLHIKGIH 361
+VC CGK FT K++L +H +GIH
Sbjct: 11 YVCSDCGKAFTFKSQLIVH-QGIH 33
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 370 YICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH--------- 416
Y+C + C K F +N L+ H HT + PY+C + C F+ LK H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 417 -KNSSCPKL-YSYETYLKHLKTNH 438
K+ SC + ++ YLKH+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEK 559
F C+ C ++F+ +LK H RTHT EK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 393 TNEKPYKCKDCGAAFNHNVSL----KNHKNSSCP 422
+ EKPY+C DCG AF L + H S P
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGP 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y CE C K + L H +VHT E+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 393 TNEKPYKCKDCGAAFNHNVSLKNHK 417
T E P+KC +CG F+H+ L H+
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQ 32
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y CE C K F L H VHT EKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
K + C C K FT + L H ++HT EKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
F C C K FT L H + HT EKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNH 416
R H+ EKPY+C C A F + ++K H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMH 34
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 339 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 380
VCP C F+ L+ HI+ E T +C C KEFT
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYT------EHTKVCPVCKKEFT 111
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
+K Y C+ C K F +L +H RVHT E+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C+ C K F + L H +HT EKP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNH 416
+KPY+C +CG AF N SL H
Sbjct: 10 KKPYECIECGKAFIQNTSLIRH 31
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 393 TNEKPYKCKDCGAAFNHNVSLKNHK 417
+ E PY+C +CG AFN L +H+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQ 30
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNE 558
+VC C K F YL H RTHT E
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNE 395
K Y+C C K F +YL H R HT E
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
EK Y+C C K F ++ H R+HT E
Sbjct: 8 EKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK Y CE C F +LR H+ +HT P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNH 416
EKPYKC+ CGA F L+ H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAH 30
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
K Y C C K F+ + L H R HT KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
EK + C C K F+ + L H ++HT EKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 334 SGQYHVCPHCGKKFTRKAELQLH 356
SG+ H+C CGKKF K L+ H
Sbjct: 6 SGKTHLCDMCGKKFKSKGTLKSH 28
>pdb|2DJR|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Bed Domain Containing Protein 2
Length = 76
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 321 EVVHLAIHKKHSHSGQYHVCPHCGKKFTR-------KAELQLHIKGIHLKHQLEKT 369
E HLA + H QY C CG++ +R L H+K +H + +LEK+
Sbjct: 12 EYFHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMH-REELEKS 66
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHKNS 419
EKP++CK+CG F+ + SL H S
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRS 34
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
E+ Y C C K F + L H R+H EKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,892,877
Number of Sequences: 62578
Number of extensions: 662938
Number of successful extensions: 2645
Number of sequences better than 100.0: 170
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1646
Number of HSP's gapped (non-prelim): 823
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)