RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15165
(606 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 95.2 bits (238), Expect = 8e-23
Identities = 69/245 (28%), Positives = 92/245 (37%), Gaps = 78/245 (31%)
Query: 347 FTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAA 406
+ + EK Y C C K F+ ++L H R HT EKPYKC +CG +
Sbjct: 3 EFGSSSSVAQ-AALEPG---EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS 58
Query: 407 FNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHG---YEVSNLCYICG-FFSAKRSTLAH 462
F+ L +H +T H G Y+ C CG FS +R+ L
Sbjct: 59 FSDKKDL-----------------TRHQRT-HTGEKPYK----CPECGKSFS-QRANLRA 95
Query: 463 HIQDHIQPRMKQKQICEICCAEVYHINGHIKDKHSG---FFLQCPHCPKTFPRKTELSNH 519
H Q R H+G + CP C K+F + L H
Sbjct: 96 H-----Q-RT-----------------------HTGEKPY--ACPECGKSFSQLAHLRAH 124
Query: 520 IKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCV-CGLGFNFNVS 574
+ H T + C C K F+ L H RTHT EKPYKC CG F+ +
Sbjct: 125 -QRTH-------TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDA 176
Query: 575 LKNHK 579
L H+
Sbjct: 177 LNVHQ 181
Score = 85.6 bits (213), Expect = 2e-19
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HV 339
C CG ++ L H R GE K + C ++ +L H++ +H+G+ +
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGE---KPYKCPECGKSFSQRANLRAHQR-THTGEKPYA 107
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 399
CP CGK F++ A L+ H H EK Y C C K F+ + L H R HT EKPYK
Sbjct: 108 CPECGKSFSQLAHLRAH----QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK 163
Query: 400 CKDCGAAFNHNVSLKNHK 417
C +CG +F+ +L H+
Sbjct: 164 CPECGKSFSRRDALNVHQ 181
Score = 79.0 bits (196), Expect = 3e-17
Identities = 70/250 (28%), Positives = 90/250 (36%), Gaps = 81/250 (32%)
Query: 324 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 382
G+ + CP CGK F+R L H + H EK Y C C K F+
Sbjct: 8 SSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEH-QRTHTG---EKPYKCPECGKSFSDK 62
Query: 383 NYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYL-KHLKTNHHG- 440
L RH R HT EKPYKC + C K +S L H +T H G
Sbjct: 63 KDLTRHQRTHTGEKPYKCPE------------------CGKSFSQRANLRAHQRT-HTGE 103
Query: 441 --YEVSNLCYICG-FFSAKRSTLAHHIQDHIQPRMKQKQICEICCAEVYHINGHIKDKHS 497
Y C CG FS + + L H Q+ H+
Sbjct: 104 KPYA----CPECGKSFS-QLAHLRAH----------QR-------------------THT 129
Query: 498 G---FFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKR 550
G + +CP C K+F R+ L H + H T + C C K F+ L
Sbjct: 130 GEKPY--KCPECGKSFSREDNLHTH-QRTH-------TGEKPYKCPECGKSFSRRDALNV 179
Query: 551 HMRTHTNEKP 560
H RTHT +K
Sbjct: 180 HQRTHTGKKT 189
Score = 57.1 bits (139), Expect = 1e-09
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HV 339
C CG R+ L+ H R GE E C +++ HL H++ +H+G+ +
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPE---CGKSFSQLAHLRAHQR-THTGEKPYK 135
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
CP CGK F+R+ L H H EK Y C C K F+ + L H R HT +K
Sbjct: 136 CPECGKSFSREDNLHTH----QRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 50.5 bits (122), Expect = 2e-07
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 509 TFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCV 564
+ + + + C C K F+ +L H RTHT EKPYKC
Sbjct: 2 SEFGSSSSVAQ-AALE-------PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCP 53
Query: 565 -CGLGFNFNVSLKNHK 579
CG F+ L H+
Sbjct: 54 ECGKSFSDKKDLTRHQ 69
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 85.2 bits (212), Expect = 2e-20
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 324 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 381
+ + + + C CG+ FT+ L +H + H E+ Y C+ CHK F
Sbjct: 4 GSSGGRL-PSKTKKEFI-CKFCGRHFTKSYNLLIH-ERTHTD---ERPYTCDICHKAFRR 57
Query: 382 YNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
++LR H +H+ EKP+KC++CG F + +L HK
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 63.2 bits (155), Expect = 1e-12
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 324 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 381
+L IH++ +H+ + Y C C K F R+ L+ H + IH K EK + C+ C K F
Sbjct: 32 NLLIHER-THTDERPYT-CDICHKAFRRQDHLRDH-RYIHSK---EKPFKCQECGKGFCQ 85
Query: 382 YNYLRRHMRVHTNEKPYKC 400
L H +H
Sbjct: 86 SRTLAVHKTLHMQTSSPTA 104
Score = 56.7 bits (138), Expect = 2e-10
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
C C + F + L H + H T + C+ C+K F +L+ H H+
Sbjct: 19 ICKFCGRHFTKSYNLLIH-ERTH-------TDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 558 EKPYKC-VCGLGFNFNVSLKNHK 579
EKP+KC CG GF + +L HK
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHK 93
Score = 50.5 bits (122), Expect = 4e-08
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
F+C++C + FT L H RTHT+E+PY C +C F L++H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 49.7 bits (120), Expect = 8e-08
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
C C K F R+ L +H + IH + F C+ C K F + L H H
Sbjct: 47 TCDICHKAFRRQDHLRDH-RYIH-------SKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Query: 558 EKPYKC 563
Sbjct: 99 TSSPTA 104
Score = 41.7 bits (99), Expect = 5e-05
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 547 YLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+K + C CG F + +L H+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE 37
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 81.7 bits (203), Expect = 3e-19
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 399
C CGK F+RK +L+ H++ H K Y C+ C + L +H+R+H++E+P+K
Sbjct: 11 CEVCGKCFSRKDKLKTHMR----CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 400 CKDCGAAFNHNVSLKNHK 417
C+ C A ++ L H
Sbjct: 67 CQICPYASRNSSQLTVHL 84
Score = 70.5 bits (174), Expect = 3e-15
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ CE C K F+ + L+ HMR HT KPYKCK C A + SL H
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 65.9 bits (162), Expect = 1e-13
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 324 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 381
L H + H+G Y C C + L H++ H E+ + C+ C
Sbjct: 23 KLKTHMR-CHTGVKPYK-CKTCDYAAADSSSLNKHLR----IHSDERPFKCQICPYASRN 76
Query: 382 YNYLRRHMRVHTNEKPYKC 400
+ L H+R HT +
Sbjct: 77 SSQLTVHLRSHTGDSGPSS 95
Score = 54.0 bits (131), Expect = 2e-09
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
CE C K F+ LK HMR HT KPYKC C + SL H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 52.0 bits (126), Expect = 9e-09
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTNE 558
C C + L+ H++ IH + F C+ C L H+R+HT +
Sbjct: 39 CKTCDYAAADSSSLNKHLR-IH-------SDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Query: 559 KPYKC 563
Sbjct: 91 SGPSS 95
Score = 35.5 bits (83), Expect = 0.006
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 554 THTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ + P+KC VCG F+ LK H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHM 28
Score = 26.2 bits (59), Expect = 9.6
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
P+ KC VC + DKL HM H G PY KC+ CD+ L +H++
Sbjct: 8 PH--KCEVCGKCFSRKDKLKTHM---RCHTGV-KPY--KCKTCDYAAADSSSLNKHLRI- 58
Query: 272 HGG---YETSSLCYHCGYYSKNRSTLKNHVRVEHGE 304
H ++ C C Y S+N S L H+R G+
Sbjct: 59 HSDERPFK----CQICPYASRNSSQLTVHLRSHTGD 90
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 80.6 bits (200), Expect = 5e-19
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 324 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 382
+ +H+G+ + C HC K F +K L +H K H + + ++C C K FT
Sbjct: 2 SSGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 383 NYLRRHMRVHTNEKPYKCKDCGAAF 407
N + RH + ++ G +
Sbjct: 61 NTMARHADNCAGPDGVEGENSGPSS 85
Score = 59.5 bits (145), Expect = 2e-11
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPY 561
C HC KTF +K L H K H + + FVC C K FT + RH
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGV 76
Query: 562 KCV-CGLGF 569
+ G
Sbjct: 77 EGENSGPSS 85
Score = 51.4 bits (124), Expect = 1e-08
Identities = 12/33 (36%), Positives = 12/33 (36%)
Query: 385 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
R HT EKPY C C F L H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHF 35
Score = 44.4 bits (106), Expect = 4e-06
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNE----KPYKCV-CGLGFNFNVSLKNHK 579
+ C +C+K F Q L H + + + + C CG F ++ H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 41.4 bits (98), Expect = 4e-05
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 548 LKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNHKQ 580
RTHT EKPY C C F L H +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 80.2 bits (199), Expect = 9e-19
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 399
C CGK F R + L H L H + Y C+YC K F + +++H +HT EKP+K
Sbjct: 4 CKICGKSFKRSSTLSTH----LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 400 CKDCGAAFNHNVSLKNHK 417
C+ CG AF+ + +L H
Sbjct: 60 CQVCGKAFSQSSNLITHS 77
Score = 63.2 bits (155), Expect = 8e-13
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 369 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
++ C+ C K F + L H+ +H++ +PY C+ CG F+ +K H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Score = 58.2 bits (142), Expect = 4e-11
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
C C K+F R + LS H IH + + C+YC K F +K+H HT
Sbjct: 3 DCKICGKSFKRSSTLSTH-LLIH-------SDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 54
Query: 558 EKPYKC-VCGLGFNFNVSLKNHK 579
EKP+KC VCG F+ + +L H
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHS 77
Score = 49.0 bits (118), Expect = 7e-08
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 532 TFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+F C+ C K F L H+ H++ +PY C CG F+ +K H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Score = 46.6 bits (112), Expect = 6e-07
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 324 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 381
L+ H HS Y C +CGK+F +K++++ H IH EK + C+ C K F+
Sbjct: 16 TLSTHLL-IHSDTRPY-PCQYCGKRFHQKSDMKKHTF-IHTG---EKPHKCQVCGKAFSQ 69
Query: 382 YNYLRRHMRVHT 393
+ L H R HT
Sbjct: 70 SSNLITHSRKHT 81
Score = 33.2 bits (77), Expect = 0.032
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHT 556
C +C K F +K+++ H IH T C+ C K F+ L H R HT
Sbjct: 32 CQYCGKRFHQKSDMKKHTF-IH-------TGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 77.5 bits (192), Expect = 1e-17
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 342 HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 401
C ++F++ L HI+ H +K + C C + F+ ++L H+R HT EKP+ C
Sbjct: 11 SCDRRFSQSGSLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 402 DCGAAFNHNVSLKNHK 417
CG F + K H
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 62.1 bits (152), Expect = 2e-12
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 505 HCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
C + F + L+ HI+ IH T F C C + F+ +L H+RTHT EKP
Sbjct: 11 SCDRRFSQSGSLTRHIR-IH-------TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 561 YKC-VCGLGFNFNVSLKNHK 579
+ C +CG F + K H
Sbjct: 63 FACDICGRKFARSDERKRHT 82
Score = 54.4 bits (132), Expect = 1e-09
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 324 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 382
L H + H+GQ C C + F+R L HI+ H EK + C+ C ++F
Sbjct: 21 SLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARS 75
Query: 383 NYLRRHMRVHTNEK 396
+ +RH ++H +K
Sbjct: 76 DERKRHTKIHLRQK 89
Score = 47.5 bits (114), Expect = 4e-07
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
QC C + F R L+ HI+ H T F C+ C ++F KRH + H
Sbjct: 36 QCRICMRNFSRSDHLTTHIR-TH-------TGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 558 EK 559
+K
Sbjct: 88 QK 89
Score = 32.4 bits (75), Expect = 0.065
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 395 EKPYKC--KDCGAAFNHNVSLKNHK 417
E+PY C + C F+ + SL H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI 26
Score = 26.7 bits (60), Expect = 7.6
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 558 EKPYKCV---CGLGFNFNVSLKNHK 579
E+PY C C F+ + SL H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI 26
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 79.2 bits (196), Expect = 1e-17
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYC-----HKEFTFYNYLRRHMRVHTN 394
C ++F + +L HI H+ H K ++C + + F L HMR HT
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHI-HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 395 EKPYKCK--DCGAAFNHNVSLKNHK 417
EKP+KC C +++ +LK H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 67.2 bits (165), Expect = 2e-13
Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 72/211 (34%)
Query: 215 FKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHGG 274
+ C + +S ++L+ H++ + +H + + C
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGER-KEF--VCHWGG------------------- 41
Query: 275 YETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHS 334
C K + L H+R H+
Sbjct: 42 ------CSRELRPFKAQYMLVVHMRR--------------------------------HT 63
Query: 335 GQY-HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHM 389
G+ H C C K ++R L+ H++ H EK Y+CE+ C K F+ + +H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLR----SHTGEKPYMCEHEGCSKAFSNASDRAKHQ 119
Query: 390 -RVHTNEKPYKCK--DCGAAFNHNVSLKNHK 417
R H+NEKPY CK C + SL+ H
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 66.1 bits (162), Expect = 4e-13
Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 61/198 (30%)
Query: 395 EKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHGYEVSNLCYICGFFS 454
E + C F+ L +H NS +H+ + C+ G
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINS------------EHIHGERKEFV----CHWGGCSR 44
Query: 455 AKRSTLAHHIQDHIQPRMKQKQICEICCAEVYHINGHIKDKHSG---FFLQCPHCPKTFP 511
R K + Y + H++ +H+G C K++
Sbjct: 45 ELRP-------------FKAQ----------YMLVVHMR-RHTGEKPHKCTFEGCRKSYS 80
Query: 512 RKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYLKRHM-RTHTNEKPYKCV 564
R L H++ H T ++CE+ C+K F+ +H RTH+NEKPY C
Sbjct: 81 RLENLKTHLR-SH-------TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK 132
Query: 565 ---CGLGFNFNVSLKNHK 579
C + SL+ H
Sbjct: 133 LPGCTKRYTDPSSLRKHV 150
Score = 59.9 bits (146), Expect = 6e-11
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYLKRHMRTHT 556
C + F + L H++ H T C + C K ++ L+ LK H+R+HT
Sbjct: 42 CSRELRPFKAQYMLVVHMR-RH-------TGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93
Query: 557 NEKPYKC---VCGLGFNFNVSLKNHKQ 580
EKPY C C F+ H+
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQN 120
Score = 58.4 bits (142), Expect = 2e-10
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 22/159 (13%)
Query: 249 FKCRVCDWKLNSYDKLLRHIKSDH-GGYETSSLCYHCGYYS-----KNRSTLKNHVRVEH 302
+ C + +S ++L+ HI S+H G +C+ G K + L H+R
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 303 GE--NQAKRKEKKICDICSAEVVHLAIHKKHSHSGQ--YHVCPH--CGKKFTRKAELQLH 356
GE ++ + C + + +L H + SH+G+ Y +C H C K F+ ++ H
Sbjct: 64 GEKPHKCTFEG---CRKSYSRLENLKTHLR-SHTGEKPY-MCEHEGCSKAFSNASDRAKH 118
Query: 357 IKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHT 393
H EK Y+C+ C K +T + LR+H++
Sbjct: 119 QNRTHSN---EKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 56.8 bits (138), Expect = 8e-10
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHM---RVHTNEKPYKCKDCGA-----AFNHNVSLKNHK 417
E + C +EF L H+ +H K + C G F L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 76.8 bits (190), Expect = 2e-17
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 399
C C + F+R L HI+ H EK + C+ C ++F + +RH + P
Sbjct: 6 CRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRHRDIQH-ILPIL 60
Query: 400 CKDCGAAFNHNVSLKNHK 417
+ N L+N
Sbjct: 61 EDKVEELLSKNYHLENEV 78
Score = 66.8 bits (164), Expect = 5e-14
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
K + C C + F+ ++L H+R HT EKP+ C CG F + K H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 63.3 bits (155), Expect = 8e-13
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
QC C + F R L+ HI+ H T F C+ C ++F KRH
Sbjct: 5 QCRICMRNFSRSDHLTTHIR-TH-------TGEKPFACDICGRKFARSDERKRHRDIQH- 55
Query: 558 EKPYKC-VCGLGFNFNVSLKNHKQ 580
P + N L+N
Sbjct: 56 ILPILEDKVEELLSKNYHLENEVA 79
Score = 60.6 bits (148), Expect = 7e-12
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
F C C + F+ +L H+RTHT EKP+ C +CG F + K H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 49.4 bits (119), Expect = 7e-08
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 315 CDICS---AEVVHLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKT 369
C IC + HL H + +H+G+ + C CG+KF R E + H I
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFA-CDICGRKFARSDERKRHRD-IQH----ILP 58
Query: 370 YICEYCHKEFTFYNYLRRH---MRVHTNEK 396
+ + + + +L ++ E+
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 42.1 bits (100), Expect = 2e-05
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFT---FLQYLKRHMRTHTNE 558
C C + F R E H I H L + + + + L+ ++ E
Sbjct: 33 ACDICGRKFARSDERKRHRD-IQ--HILP--ILEDKVEELLSKNYHLENEVARLKKLVGE 87
Query: 559 K 559
+
Sbjct: 88 R 88
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 76.8 bits (190), Expect = 4e-17
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 341 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPY 398
P C K++ + + LQ+H + KH EK Y C++ C + F+ + L+RH R HT KP+
Sbjct: 12 PGCNKRYFKLSHLQMHSR----KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 399 KCKDCGAAFNHNVSLKNHK 417
+CK C F+ + LK H
Sbjct: 68 QCKTCQRKFSRSDHLKTHT 86
Score = 61.4 bits (150), Expect = 1e-11
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTNE 558
C + F R +L H + H T F C+ C ++F+ +LK H RTHT E
Sbjct: 41 FKDCERRFSRSDQLKRHQR-RH-------TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Query: 559 KPYKC---VCGLGFNFNVSLKNHK 579
KP+ C C F + L H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHH 116
Score = 59.1 bits (144), Expect = 6e-11
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 504 PHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYLKRHMRTHTN 557
P C K + + + L H + H T + C++ C + F+ LKRH R HT
Sbjct: 12 PGCNKRYFKLSHLQMHSR-KH-------TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 558 EKPYKC-VCGLGFNFNVSLKNHK 579
KP++C C F+ + LK H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHT 86
Score = 54.8 bits (133), Expect = 2e-09
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 533 FVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKCV---CGLGFNFNVSLKNHK 579
F+C Y CNK + L +L+ H R HT EKPY+C C F+ + LK H+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58
Score = 47.5 bits (114), Expect = 6e-07
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 291 RSTLKNHVRVEHGENQAKRK----EKKICDICSAEVVHLAIHKKHSHSGQ--YHVCPHCG 344
S L+ H R GE K + K C+ + L H++ H+G + C C
Sbjct: 21 LSHLQMHSRKHTGE-----KPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQ-CKTCQ 73
Query: 345 KKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVH 392
+KF+R L+ H + H EK + C + C K+F + L RH +H
Sbjct: 74 RKFSRSDHLKTHTR----THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 38.7 bits (91), Expect = 7e-04
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYLKRHMRTH 555
QC C + F R L H + H T F C + C K+F L RH H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTR-TH-------TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 34.0 bits (79), Expect = 0.027
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 393 TNEKPYKCK--DCGAAFNHNVSLKNHK 417
+ ++P+ C C + L+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS 28
Score = 28.3 bits (64), Expect = 3.0
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 556 TNEKPYKC---VCGLGFNFNVSLKNHK 579
+ ++P+ C C + L+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS 28
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 77.7 bits (192), Expect = 5e-17
Identities = 40/214 (18%), Positives = 58/214 (27%), Gaps = 83/214 (38%)
Query: 375 CHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHL 434
+ + K C F+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFST------------------------- 37
Query: 435 KTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDHIQPRMKQKQICEICCAEVYHINGHIKD 494
L H+ H+ G ++
Sbjct: 38 ----------------------MHELVTHVTME-------------------HVGGPEQN 56
Query: 495 KHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYL 548
H ++ +CP K+F K +L NHI+ +H T F C + C K F + L
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIR-VH-------TGEKPFPCPFPGCGKIFARSENL 108
Query: 549 KRHMRTHTNEKPYKCV---CGLGFNFNVSLKNHK 579
K H RTHT EKP+KC C F + K H
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 71.5 bits (176), Expect = 5e-15
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICS------AEVVHLAIHKKHSHS 334
C L HV +EH + + C L H + H+
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHT 86
Query: 335 GQY-HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHM 389
G+ CP CGK F R L++H + H EK + CE+ C + F + ++HM
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKR----THTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 390 RVHTNEKPYKC 400
VHT++K
Sbjct: 143 HVHTSDKSGPS 153
Score = 57.3 bits (139), Expect = 6e-10
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 344 GKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK---- 399
G + ++ + + + + + C + F+ + L H+ + P +
Sbjct: 1 GSSGSSGQPIKQELS-CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 400 -----CKDCGAAFNHNVSLKNHK 417
C G +F L NH
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHI 82
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 74.5 bits (184), Expect = 8e-17
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKP 397
P CG+ F+ + L H K H+ +K++ C C K F F +L+ HM++H++ +
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIH---QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 398 YKCKDCGAAF 407
Y C+ G +
Sbjct: 69 YICEFSGPSS 78
Score = 58.3 bits (142), Expect = 3e-11
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYLKRHMRTHT 556
P C + F + L++H K H F C C K F F ++LK HM+ H+
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQH-------IHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Query: 557 NEKPYKC-VCGLGF 569
+ + Y C G
Sbjct: 65 DTRDYICEFSGPSS 78
Score = 49.9 bits (120), Expect = 3e-08
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 533 FVCEY--CNKEFTFLQYLKRHMR-THTNEKPYKC---VCGLGFNFNVSLKNHK 579
C++ C + F+ QYL H + H ++K + C CG FNF LK H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 37.5 bits (88), Expect = 0.001
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 392 HTNEKPYKCK--DCGAAFNHNVSLKNHK 417
+ C CG F++ L +HK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHK 29
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 75.2 bits (186), Expect = 9e-17
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 342 HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 401
CGK FT K++ H+ +HL + Y C C K+F ++L HM++HT KPY+C
Sbjct: 14 QCGKSFTHKSQRDRHMS-MHLG---LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 402 DCGAAFNHNVSL 413
C F S
Sbjct: 70 ICAKRFMWRDSF 81
Score = 73.6 bits (182), Expect = 4e-16
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 324 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 382
H H G + C CGKKF K L H+K IH K Y C C K F +
Sbjct: 24 QRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTG---IKPYECNICAKRFMWR 78
Query: 383 NYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKN 415
+ H V + K Y+ +
Sbjct: 79 DSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 65.5 bits (161), Expect = 3e-13
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+K Y C+ C K FT + RHM +H +PY C CG F L H
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57
Score = 50.9 bits (123), Expect = 3e-08
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 505 HCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
C K+F K++ H+ +H + C C K+F +L HM+ HT KP
Sbjct: 14 QCGKSFTHKSQRDRHMS-MH-------LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 561 YKC-VCGLGFNFNVSL 575
Y+C +C F + S
Sbjct: 66 YECNICAKRFMWRDSF 81
Score = 47.4 bits (114), Expect = 6e-07
Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 15/81 (18%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
C C K F K L H+K IH T + C C K F + H +
Sbjct: 39 GCGVCGKKFKMKHHLVGHMK-IH-------TGIKPYECNICAKRFMWRDSF--HRHVTSC 88
Query: 558 EKPYKCV-CGLGFNFNVSLKN 577
K Y+ +
Sbjct: 89 TKSYEAAKAEQNTTEASGPSS 109
Score = 43.2 bits (103), Expect = 2e-05
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 22/91 (24%)
Query: 389 MRVHTNEKPYKCKDCGAAFNHNVSLKNHKN----------SSCPKLYSYETYL-KHLKTN 437
+ +K Y C CG +F H H + C K + + +L H+K
Sbjct: 2 SSGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI- 59
Query: 438 HHG---YEVSNLCYICG-FFSAKRSTLAHHI 464
H G YE C IC F R + H+
Sbjct: 60 HTGIKPYE----CNICAKRFM-WRDSFHRHV 85
Score = 40.1 bits (95), Expect = 2e-04
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 552 MRTHTNEKPYKCVCGLGFNFNVSLKNHK 579
+ +K Y C CG F H
Sbjct: 2 SSGSSGDKLYPCQCGKSFTHKSQRDRHM 29
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 74.9 bits (185), Expect = 2e-16
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 340 CPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
CPH C K F + ++ H+ H + ++C C K F + L+RH VHT EKP
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLH-THG----PRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 398 YKC--KDCGAAFNHNVSLKNHK 417
++C + CG F+ + +L+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHV 84
Score = 74.5 bits (184), Expect = 2e-16
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 324 HLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTF 381
+ H H+H + HVC CGK F ++L+ H L H EK + C + C K F+
Sbjct: 22 AMRKHL-HTHGPRVHVCAECGKAFVESSKLKRH----QLVHTGEKPFQCTFEGCGKRFSL 76
Query: 382 YNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNHK 417
LR H+R+HT ++PY C C F + +LK+H
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 60.2 bits (147), Expect = 3e-11
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 502 QCPH--CPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
CPH C K F + + H+ H + VC C K F LKRH HT EK
Sbjct: 7 ACPHKGCTKMFRDNSAMRKHLH-THGP----RVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 560 PYKCV---CGLGFNFNVSLKNHK 579
P++C CG F+ + +L+ H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHV 84
Score = 56.4 bits (137), Expect = 5e-10
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYLKRHMRTH 555
C C K F ++L H +H T F C + C K F+ L+ H+R H
Sbjct: 36 VCAECGKAFVESSKLKRHQL-VH-------TGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Query: 556 TNEKPYKCV---CGLGFNFNVSLKNHK 579
T ++PY C C F + +LK+H
Sbjct: 88 TGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 55.2 bits (134), Expect = 1e-09
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 284 CGYYSKNRSTLKNHVRVEHGENQAKRKEKK--ICDICS---AEVVHLAIHKKHSHSGQY- 337
C ++ S ++ H+ HG + +C C E L H+ H+G+
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGP--------RVHVCAECGKAFVESSKLKRHQL-VHTGEKP 62
Query: 338 HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHT 393
C CGK+F+ L+ H++ IH ++ Y+C + C+K+F L+ H+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVR-IHTG---DRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Query: 394 NEKPYK 399
K +
Sbjct: 119 KAKNNQ 124
Score = 48.7 bits (117), Expect = 3e-07
Identities = 43/185 (23%), Positives = 58/185 (31%), Gaps = 80/185 (43%)
Query: 395 EKPYKC--KDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHG---YEVSNLCYI 449
+ C K C F N +++ KHL T HG + C
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMR-----------------KHLHT--HGPRVHV----CAE 39
Query: 450 CG-FFSAKRSTLAHHIQDHIQPRMKQKQICEICCAEVYHINGHIKDKHSG---FFLQCPH 505
CG F + S L H + H+G F QC
Sbjct: 40 CGKAFV-ESSKLKRHQ------LV-----------------------HTGEKPF--QCTF 67
Query: 506 --CPKTFPRKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYLKRHMRTHTN 557
C K F L H++ IH T +VC + CNK+F LK H+ TH
Sbjct: 68 EGCGKRFSLDFNLRTHVR-IH-------TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Query: 558 EKPYK 562
K +
Sbjct: 120 AKNNQ 124
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 74.9 bits (185), Expect = 1e-15
Identities = 46/235 (19%), Positives = 66/235 (28%), Gaps = 70/235 (29%)
Query: 364 HQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKCK--DCGAAFNHNVSLKNHKNS 419
+ K YIC + C + L+ H+ HT EKP+ CK C F L
Sbjct: 7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT----- 61
Query: 420 SCPKLYSYETYLKHLKTNHHG---YEVSNLC--YICGFFSAKRSTLAHHIQDHIQPRMKQ 474
+H T H G + C C ++ + H
Sbjct: 62 ------------RHSLT-HTGEKNFT----CDSDGCDLRFTTKANMKKH----------- 93
Query: 475 KQICEICCAEVYHINGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQT-- 532
K + +C K F + +L H H T
Sbjct: 94 FNR-------------FHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SH-------TQQ 132
Query: 533 --FVC--EYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQKC 582
+ C E C+K F+ LKRH + H K C H +C
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187
Score = 69.2 bits (170), Expect = 8e-14
Identities = 54/232 (23%), Positives = 77/232 (33%), Gaps = 76/232 (32%)
Query: 341 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPY 398
CG + + +LQ H+ KH EK + C+ C K FT ++L RH HT EK +
Sbjct: 18 ADCGAAYNKNWKLQAHLC----KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73
Query: 399 KCKD--CGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHG-----YEVSNLCYI-- 449
C C F ++K KH H Y C+
Sbjct: 74 TCDSDGCDLRFTTKANMK-----------------KHFNR-FHNIKICVYV----CHFEN 111
Query: 450 CGFFSAKRSTLAHHIQDHIQPRMKQKQICEICCAEVYHINGHIKDKHSG---FFLQCPH- 505
CG K + L H Q H+ + +CPH
Sbjct: 112 CGKAFKKHNQLKVH----------QFS-------------------HTQQLPY--ECPHE 140
Query: 506 -CPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHT 556
C K F + L H K +H + ++ C + K +T YLK H
Sbjct: 141 GCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWT--LYLKHVAECHQ 189
Score = 64.2 bits (157), Expect = 4e-12
Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 13/134 (9%)
Query: 291 RSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHV-----CPHCGK 345
L H GE CD+ ++ H +CGK
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDG-CDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGK 114
Query: 346 KFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDC 403
F + +L++H H + + Y C E C K F+ + L+RH +VH K C
Sbjct: 115 AFKKHNQLKVHQF-SHTQ---QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Query: 404 GAAFNHNVSLKNHK 417
H
Sbjct: 171 SFVGKTWTLYLKHV 184
Score = 39.1 bits (92), Expect = 0.002
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 551 HMRTHTNEKPYKCV---CGLGFNFNVSLKNHK 579
K Y C CG +N N L+ H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHL 34
Score = 38.0 bits (89), Expect = 0.003
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 12/116 (10%)
Query: 284 CGYYSKNRSTLKNHVRVEHGENQAKRK-EKKICDICSAEVVHLAIHKKHSHSGQ--YHVC 340
C ++ +K H H + C + L +H+ SH+ Q Y C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPY-EC 137
Query: 341 PH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEF-TFYNYLRRHMRVHT 393
PH C K+F+ + L+ H K +H + +K + C T+ YL+ H
Sbjct: 138 PHEGCDKRFSLPSRLKRHEK-VHAGYPCKK---DDSCSFVGKTWTLYLKHVAECHQ 189
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 70.9 bits (175), Expect = 1e-15
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+K Y C+ C F + L H VHT EKPY+C CGA FN +LK H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 59.0 bits (144), Expect = 2e-11
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 324 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 381
H H Y C C F K L H K +H EK Y C C +F
Sbjct: 4 HHHHHSH-MTHSDKPYK-CDRCQASFRYKGNLASH-KTVHTG---EKPYRCNICGAQFNR 57
Query: 382 YNYLRRHMRVHTNEKPY 398
L+ H R+H+ EKPY
Sbjct: 58 PANLKTHTRIHSGEKPY 74
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
C+ C F + L H HT EKPY+C +CG FN +LK H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 45.9 bits (110), Expect = 9e-07
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTNE 558
C C +F K L++H K +H T + C C +F LK H R H+ E
Sbjct: 20 CDRCQASFRYKGNLASH-KTVH-------TGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Query: 559 KPY 561
KPY
Sbjct: 72 KPY 74
Score = 44.4 bits (106), Expect = 3e-06
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 547 YLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ H ++KPYKC C F + +L +HK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 69.8 bits (172), Expect = 5e-15
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
CE C K F +L RH H+ EKPY C CG F + H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
Score = 55.6 bits (135), Expect = 5e-10
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
CE C K F + +L RH +H+ EKPY C VCGL F + H
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
Score = 55.6 bits (135), Expect = 5e-10
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
C C K F L+ H K H + + C C F + H+R+H
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSH-------SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 558 E--KPYKC-VCGLGFNFNVSLKNHKQK 581
KPY C CG GF+ L H ++
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 43.6 bits (104), Expect = 9e-06
Identities = 27/139 (19%), Positives = 38/139 (27%), Gaps = 57/139 (41%)
Query: 392 HTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHG---YEVSNLCY 448
+ C+ CG F L HK S H G Y C
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS------------------HSGEKPYS----CP 39
Query: 449 ICGFFSAKRSTLAHHIQDHIQPRMKQKQICEICCAEVYHINGHIKDKHSGFFL---QCPH 505
+CG ++ +++H + H G C
Sbjct: 40 VCGLRFKRKDRMSYH-----------VRS------------------HDGSVGKPYICQS 70
Query: 506 CPKTFPRKTELSNHIKGIH 524
C K F R L+ HIK +H
Sbjct: 71 CGKGFSRPDHLNGHIKQVH 89
Score = 40.6 bits (96), Expect = 9e-05
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHM-RTHTNEK 559
CP C F RK +S H++ H + + ++C+ C K F+ +L H+ + H+
Sbjct: 37 SCPVCGLRFKRKDRMSYHVR-SHDG-SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 37.1 bits (87), Expect = 0.001
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY--- 337
C CG ++ L H GE K +C + ++ H + SH G
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGE---KPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKP 65
Query: 338 HVCPHCGKKFTRKAELQLHIKGIH 361
++C CGK F+R L HIK +H
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.1 bits (74), Expect = 0.11
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 555 HTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ C +CG F L HK
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHK 27
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 70.0 bits (172), Expect = 6e-15
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 338 HVC--PHCGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHT 393
H C P C K +T+ + L+ H++ H EK Y C E C F + L RH R HT
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLR----THTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 394 NEKPYKCKDCGAAFNHNVSLKNHK 417
KP++C C +F+ + L H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHM 95
Score = 53.8 bits (130), Expect = 3e-09
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVC--EYCNKEFTFLQYLKRHMRTHTNEK 559
P C K + + + L H++ H + + C E C+ F L RH R HT K
Sbjct: 19 DYPGCTKVYTKSSHLKAHLR----THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 560 PYKC-VCGLGFNFNVSLKNHK 579
P++C VC F+ + L H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHM 95
Score = 52.6 bits (127), Expect = 6e-09
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 324 HLAIHKKHSHSGQY-HVC--PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 380
HL H +H+G+ + C C +F R EL H + KH K + C C++ F+
Sbjct: 32 HLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYR----KHTGAKPFQCGVCNRSFS 86
Query: 381 FYNYLRRHMRVHTN 394
++L HM+ H N
Sbjct: 87 RSDHLALHMKRHQN 100
Score = 49.5 bits (119), Expect = 8e-08
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 530 RQTFVCE--YCNKEFTFLQYLKRHMRTHTNEKPYKC---VCGLGFNFNVSLKNHKQK 581
R+ C+ C K +T +LK H+RTHT EKPYKC C F + L H +K
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 43.0 bits (102), Expect = 2e-05
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 482 CAEVYHINGHIKD---KHSG---FFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVC 535
C +VY + H+K H+G + C F R EL+ H + KH + F C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR----KHTGAKPFQC 78
Query: 536 EYCNKEFTFLQYLKRHMRTHTN 557
CN+ F+ +L HM+ H N
Sbjct: 79 GVCNRSFSRSDHLALHMKRHQN 100
Score = 26.4 bits (59), Expect = 9.6
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 379 FTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
R+H + P C + + LK H
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHL 37
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 69.1 bits (170), Expect = 7e-15
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 333 HSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHM 389
+ + CGK +T+ + L+ H++ H EK Y C + C +F + L RH
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHY 57
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
R HT +P++C+ C AF+ + L H
Sbjct: 58 RKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 54.1 bits (131), Expect = 1e-09
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 363 KHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK--DCGAAFNHNVSLKNHK 417
K T C K +T ++L+ H+R HT EKPY C CG F + L H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 51.4 bits (124), Expect = 1e-08
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 495 KHSGFFL-QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVC--EYCNKEFTFLQYLKRH 551
K + C KT+ + + L H++ H + + C + C +F L RH
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRH 56
Query: 552 MRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
R HT +P++C C F+ + L H
Sbjct: 57 YRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 47.5 bits (114), Expect = 3e-07
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 526 KHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCV---CGLGFNFNVSLKNHKQK 581
K T C K +T +LK H+RTHT EKPY C CG F + L H +K
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 35.2 bits (82), Expect = 0.006
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 482 CAEVYHINGHIKD---KHSG---FFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVC 535
C + Y + H+K H+G + C F R EL+ H + KH + F C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQC 68
Query: 536 EYCNKEFTFLQYLKRHMRTH 555
+ C++ F+ +L HM+ H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88
Score = 33.7 bits (78), Expect = 0.023
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 324 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHL 362
L H + H+G C C + F+R L LH+K H
Sbjct: 52 ELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMK-RHF 89
Score = 27.1 bits (61), Expect = 4.2
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHM 525
QC C + F R L+ H+K H
Sbjct: 67 QCQKCDRAFSRSDHLALHMK-RHF 89
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 67.5 bits (166), Expect = 2e-14
Identities = 28/54 (51%), Positives = 34/54 (62%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
H EK Y C C K F+ + L +H RVHT EKPYKC +CG AF+ N L NH+
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 51.7 bits (125), Expect = 6e-09
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 398
C CGK F+R + L H H EK Y C C K F+ + L H R+HT+
Sbjct: 17 CVECGKAFSRSSILVQH----QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 51.3 bits (124), Expect = 1e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 385 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+H+ EKPY C +CG AF+ + L H+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ 34
Score = 48.2 bits (116), Expect = 1e-07
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ C C K F+ L +H R HT EKPYKC CG F+ N L NH+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 40.5 bits (96), Expect = 5e-05
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
C C K F R + L H + +H T + C C K F+ L H R HT+
Sbjct: 16 GCVECGKAFSRSSILVQHQR-VH-------TGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Query: 558 EKPY 561
Sbjct: 68 GPSS 71
Score = 38.6 bits (91), Expect = 3e-04
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 548 LKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
H+ EKPY CV CG F+ + L H+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ 34
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 66.3 bits (163), Expect = 5e-14
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ Y C+ C K F+ + L +H R HT EKPYKC +CG AF L H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 53.6 bits (130), Expect = 1e-09
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 324 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 381
+ + Y C CGK F+ ++L H H EK Y C+ C K F
Sbjct: 5 SSGRSEWQ-QRERRRYK-CDECGKSFSHSSDLSKH----RRTHTGEKPYKCDECGKAFIQ 58
Query: 382 YNYLRRHMRVHTNEKPYK 399
++L H RVHT P
Sbjct: 59 RSHLIGHHRVHTGSGPSS 76
Score = 53.6 bits (130), Expect = 2e-09
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 385 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
R + YKC +CG +F+H+ L H+
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR 38
Score = 48.2 bits (116), Expect = 1e-07
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
C+ C K F+ L +H RTHT EKPYKC CG F L H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 42.0 bits (100), Expect = 2e-05
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTN 557
+C C K+F ++LS H + H T + C+ C K F +L H R HT
Sbjct: 20 KCDECGKSFSHSSDLSKH-RRTH-------TGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Query: 558 EKPYK 562
P
Sbjct: 72 SGPSS 76
Score = 41.3 bits (98), Expect = 3e-05
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 548 LKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
R + YKC CG F+ + L H+
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR 38
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 67.9 bits (167), Expect = 5e-14
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
C CHK+F YL+ H R HT EKP++C CG + +L H
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 62.1 bits (152), Expect = 5e-12
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPY 561
+CP C K + RK L H M + Q F C C + F L+ HM +HT E PY
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCM-NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 562 KCV-CGLGFNFNVSLKNHKQK 581
KC C F L++H K
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIK 116
Score = 56.4 bits (137), Expect = 6e-10
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHS--HSGQY- 337
C C ++ LK H R GE K E C C +L H+ + + +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGE---KPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 338 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM-RVHTNEK 396
C C + F R+ EL+LH + H E Y C C ++F L+ HM ++H+
Sbjct: 67 FTCSVCQETFRRRMELRLH----MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 53.7 bits (130), Expect = 5e-09
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMR---THTNE 558
+CP C K F K L H + KH + F C C K + + L H + +E
Sbjct: 9 ECPTCHKKFLSKYYLKVH----NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 559 KPYKC-VCGLGFNFNVSLKNH 578
+ + C VC F + L+ H
Sbjct: 65 QVFTCSVCQETFRRRMELRLH 85
Score = 50.2 bits (121), Expect = 9e-08
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
C C+K+F YLK H R HT EKP++C CG + +L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 30.2 bits (69), Expect = 0.69
Identities = 6/26 (23%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 555 HTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ +C C F LK H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHN 27
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 66.0 bits (162), Expect = 7e-14
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNE--KPYKCKDCGAAFNHNVSLKNH 416
EK Y C CH FT ++ H+ E + C C L H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 61.8 bits (151), Expect = 2e-12
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 324 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 381
+ +HSG+ Y C C +FT+ +++HI + + C +C
Sbjct: 2 SSGSSGR-THSGEKPYE-CYICHARFTQSGTMKMHIL-QK-HTENVAKFHCPHCDTVIAR 57
Query: 382 YNYLRRHMR-VHTNEKPY 398
+ L H+R H+ P
Sbjct: 58 KSDLGVHLRKQHSYSGPS 75
Score = 59.5 bits (145), Expect = 1e-11
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 385 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKN------------SSCPKLYSYETYLK 432
R H+ EKPY+C C A F + ++K H C + + ++ L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 433 -HLKTNHHG 440
HL+ H
Sbjct: 63 VHLRKQHSY 71
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRT-HTNEKP 560
+C C F + + HI E F C +C+ L H+R H+ P
Sbjct: 17 ECYICHARFTQSGTMKMHIL-QK-HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP 74
Query: 561 Y 561
Sbjct: 75 S 75
Score = 53.3 bits (129), Expect = 2e-09
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNE--KPYKC-VCGLGFNFNVSLKNHKQK 581
+ C C+ FT +K H+ E + C C L H +K
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 48.7 bits (117), Expect = 9e-08
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 548 LKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
RTH+ EKPY+C +C F + ++K H
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
Score = 39.4 bits (93), Expect = 2e-04
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 293 TLKNHVRVEHGENQAKRKEKKICDICS---AEVVHLAIHKKHSHSGQY---HVCPHCGKK 346
+ + R GE + C IC + + +H + CPHC
Sbjct: 2 SSGSSGRTHSGEKPYE------CYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTV 54
Query: 347 FTRKAELQLHIKGIH 361
RK++L +H++ H
Sbjct: 55 IARKSDLGVHLRKQH 69
Score = 29.0 bits (66), Expect = 0.77
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 249 FKCRVCDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEH 302
++C +C + + HI H C HC +S L H+R +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 65.6 bits (161), Expect = 7e-14
Identities = 13/55 (23%), Positives = 19/55 (34%)
Query: 363 KHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
C C + LR H R+H ++P+KC C +L H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 54.4 bits (132), Expect = 8e-10
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 399
C C + KA L++H + H ++ + C YC + + L +HM+ +
Sbjct: 12 CSECSYSCSSKAALRIHER----IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67
Query: 400 C 400
Sbjct: 68 S 68
Score = 51.7 bits (125), Expect = 7e-09
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
C C+ + L+ H R H ++P+KC C +L H +K
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 43.3 bits (103), Expect = 6e-06
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 12/65 (18%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEYCNKEFTFLQYLKRHMRTHTNE 558
C C + K L H + IH F C YC+ + L +HM+ +
Sbjct: 12 CSECSYSCSSKAALRIHER-IH-------CTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 559 KPYKC 563
Sbjct: 64 MSGPS 68
Score = 34.0 bits (79), Expect = 0.012
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 553 RTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ ++ P KC C + +L+ H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE 29
Score = 27.1 bits (61), Expect = 3.3
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 249 FKCRVCDWKLNSYDKLLRHIKSDHGG---YETSSLCYHCGYYSKNRSTLKNHVRVEHGE 304
KC C + +S L H + H ++ C +C + +K S L H++ HG+
Sbjct: 10 EKCSECSYSCSSKAALRIHERI-HCTDRPFK----CNYCSFDTKQPSNLSKHMKKFHGD 63
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 66.1 bits (161), Expect = 1e-13
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 338 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY-----CHKEFTFYNYLRRHMRVH 392
C + F+ EL H+ H+ + ++C + K F L H+RVH
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 393 TNEKPYKC 400
T EK
Sbjct: 86 TGEKSGPS 93
Score = 64.2 bits (156), Expect = 5e-13
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEY-----CNKEFTFLQYLKRHMRTHT 556
C +TF EL H+ H+ + VC + K F L H+R HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 557 NEKPYKC 563
EK
Sbjct: 87 GEKSGPS 93
Score = 35.7 bits (82), Expect = 0.005
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHM-RVHTNEKPYK--------CKDCGAAFNHNVSLK 414
+ + + + C + F+ + L H+ H C G +F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 415 NH 416
NH
Sbjct: 80 NH 81
Score = 32.6 bits (74), Expect = 0.070
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 527 HELRQTFVCEYCNKEFTFLQYLKRHM-RTHTNEKPYKC---------VCGLGFNFNVSLK 576
E + + + C++ F+ + L H+ H G F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 577 NH 578
NH
Sbjct: 80 NH 81
Score = 31.5 bits (71), Expect = 0.19
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 246 PYEFKCRVCDWKLNSYDKLLRHIKSDHGGYETSSL-------CYHCGYYSKNRSTLKNHV 298
+ CD ++ +L+ H+ +H G + C G K + L NH+
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 299 RVEHGE 304
RV GE
Sbjct: 83 RVHTGE 88
Score = 29.6 bits (66), Expect = 0.85
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 10/77 (12%)
Query: 391 VHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHGYEVSNLCYIC 450
+ + K C F+ L H ++ + N+H C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVT---------MEHVGGPEQNNHVCYWEE-CPRE 68
Query: 451 GFFSAKRSTLAHHIQDH 467
G + L +HI+ H
Sbjct: 69 GKSFKAKYKLVNHIRVH 85
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 64.0 bits (157), Expect = 2e-13
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
++++CE C + F +L+RH R HTNEKPY C C AF L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 58.7 bits (143), Expect = 2e-11
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
FVCE C + F ++LKRH R+HTNEKPY C +C F L H QK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 35.2 bits (82), Expect = 0.003
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 324 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIH 361
HL H + SH+ + Y C C + FTR+ L H + IH
Sbjct: 17 HLKRHYR-SHTNEKPYP-CGLCNRAFTRRDLLIRHAQKIH 54
Score = 26.7 bits (60), Expect = 3.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIH 524
C C + F R+ L H + IH
Sbjct: 32 PCGLCNRAFTRRDLLIRHAQKIH 54
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 64.3 bits (157), Expect = 3e-13
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 338 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
C CG +KA L H + H + + CE+C K F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 398 YKCKDC 403
++
Sbjct: 67 LAPQES 72
Score = 61.3 bits (149), Expect = 4e-12
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTN---EKPYKCKDCGAAFNHNVSLKNHK 417
CE C L H R H + C+ CG F S+ H+
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 57.8 bits (140), Expect = 6e-11
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
LQC C T +K L+ H + H + F CE+C K F + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 561 YKCVCGLG 568
G
Sbjct: 67 LAPQESSG 74
Score = 55.9 bits (135), Expect = 3e-10
Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTN---EKPYKC-VCGLGFNFNVSLKNHKQK 581
CE C L H R H + C CG F S+ H+ K
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 42.8 bits (101), Expect = 1e-05
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 13/73 (17%)
Query: 392 HTNEKPYKCKDCGAAFNHNVSLKNHKN-------------SSCPKLYSYETYLKHLKTNH 438
+ +C+ CG SL H+ C K + + ++
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 439 HGYEVSNLCYICG 451
H + G
Sbjct: 62 HPALLLAPQESSG 74
Score = 33.5 bits (77), Expect = 0.025
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 555 HTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
+ +C +CG SL H++K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK 29
Score = 32.0 bits (73), Expect = 0.081
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICS---AEVVHLAIHKKHSHSGQY 337
C CG+ + +++L H R H E A + C+ C + +A H+ SH
Sbjct: 10 CEICGFTCRQKASLNWHQRK-HAETVAALRFP--CEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 338 HVCPHCGKK 346
Sbjct: 67 LAPQESSGP 75
Score = 27.4 bits (61), Expect = 3.4
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 447 CYICGFFSAKRSTLAHHIQDHIQPRMKQKQICEIC---CAEVYHINGHIKDKHSGFFLQC 503
C ICGF ++++L H + H + + CE C + + H H L
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 504 PHCPK 508
Sbjct: 70 QESSG 74
Score = 26.2 bits (58), Expect = 8.1
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 249 FKCRVCDWKLNSYDKLLRHIK--SDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQ 306
+C +C + L H + ++ C CG + ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVA-ALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 307 AKRKEK 312
+E
Sbjct: 67 LAPQES 72
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 61.5 bits (150), Expect = 3e-12
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 340 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKP 397
+CGK F + +L++H H + Y C + C K F+ + L+RH +VH
Sbjct: 6 FENCGKAFKKHNQLKVHQF----SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 398 YKCKDCGAAFNHNVSLKNH 416
K C H
Sbjct: 62 KKDDSCSFVGKTWTLYLKH 80
Score = 53.4 bits (129), Expect = 2e-09
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 533 FVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKC---VCGLGFNFNVSLKNHK 579
+VC + C K F LK H +HT + PY+C C F+ LK H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
Score = 46.8 bits (112), Expect = 6e-07
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQT----FVCEY--CNKEFTFLQYLKRHMRTHT 556
+C K F + +L H H T + C + C+K F+ LKRH + H
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SH-------TQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Query: 557 NEKPYKC-VCGLGFNFNVSLKNHKQKC 582
K C H +C
Sbjct: 58 GYPCKKDDSCSFVGKTWTLYLKHVAEC 84
Score = 39.9 bits (94), Expect = 1e-04
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 324 HLAIHKKHSHSGQY-HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEF- 379
L +H+ SH+ Q + CPH C K+F+ + L+ H K H + C
Sbjct: 18 QLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEK----VHAGYPCKKDDSCSFVGK 72
Query: 380 TFYNYLRRHMRVH 392
T+ YL+ H
Sbjct: 73 TWTLYLKHVAECH 85
Score = 33.7 bits (78), Expect = 0.019
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 502 QCPH--CPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEF-TFLQYLKRHMRTH 555
+CPH C K F + L H K H + C+ T+ YLK H
Sbjct: 33 ECPHEGCDKRFSLPSRLKRHEK----VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 29.5 bits (67), Expect = 0.72
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 246 PYEFKCRVCDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEH 302
PYE CD + + +L RH K H GY C + K + HV H
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKK-DDSCSFVGKTWTLYLKHVAECH 85
Score = 28.7 bits (65), Expect = 1.2
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 212 PYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSD 271
PYE CD + + +L RH +VH G K C + ++ L+H+
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHE---KVHAGYPC---KKDDSCSFVGKTWTLYLKHVAEC 84
Query: 272 H 272
H
Sbjct: 85 H 85
Score = 27.6 bits (62), Expect = 3.6
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HV 339
+CG K + LK H + + + CD + L H+K H+G
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG-CDKRFSLPSRLKRHEK-VHAGYPCKK 63
Query: 340 CPHCGKKFTRKAELQLHIKGIH 361
C H+ H
Sbjct: 64 DDSCSFVGKTWTLYLKHVAECH 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 59.1 bits (144), Expect = 9e-12
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHM-RVHTNEKPYKCKDCGAAFN 408
+ K YIC+ C K F+ ++L H+ +VHT+E+P+KC+ + +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 47.2 bits (113), Expect = 2e-07
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 533 FVCEYCNKEFTFLQYLKRHM-RTHTNEKPYKC-VCGLGFN 570
++C+ C K F+ +L H+ + HT+E+P+KC V G +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 43.3 bits (103), Expect = 3e-06
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ KPY C+ CG F+ L H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGH 31
Score = 37.6 bits (88), Expect = 5e-04
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
+ + KPY C CG GF+ L H ++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQ 34
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 324 HLAIHKKHSHSGQY-HVCPHCGKKFT 348
HL H K H+ + H C +
Sbjct: 27 HLNGHIKQVHTSERPHKCQVWVSGPS 52
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 57.5 bits (138), Expect = 2e-10
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 1/94 (1%)
Query: 324 HLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIK-GIHLKHQLEKTYICEYCHKEFTFY 382
++ C C + EL +H+ H + +T
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 383 NYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
L +K KC CG +F L H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 49.8 bits (118), Expect = 9e-08
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 43/148 (29%)
Query: 385 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHGYEVS 444
+ + + T ++CKDC AA++ V L H N + H + +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET-----------GHYR---DDNHET 52
Query: 445 NLCYICGFFSAKRSTLAHHIQDHIQPRMKQKQICEICCAEVYHINGHIKDKHSGFFLQCP 504
+ + ++ +L ++ L+C
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKV----------------------------LKCM 84
Query: 505 HCPKTFPRKTELSNH-IKGIHMKHELRQ 531
+C +F +LS H IK H +
Sbjct: 85 YCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 48.6 bits (115), Expect = 3e-07
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 501 LQCPHCPKTFPRKTELSNHIK-GIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+C C + EL+ H+ H + + +T + L +K
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 560 PYKC-VCGLGFNFNVSLKNHKQK 581
KC CG F L H K
Sbjct: 80 VLKCMYCGHSFESLQDLSVHMIK 102
Score = 39.4 bits (91), Expect = 5e-04
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 12/115 (10%)
Query: 291 RSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY--HVCPHCGKKFT 348
S+ K + + G ++ + C CSA L H + +
Sbjct: 4 GSSGKLYGSIFTGASKFR------CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNP 57
Query: 349 RKAELQLHIKGI--HLKHQLEKTYICEYCHKEFTFYNYLRRHM--RVHTNEKPYK 399
++ + K +K C YC F L HM H +
Sbjct: 58 KRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 35.1 bits (80), Expect = 0.013
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHM--RTHTNEK 559
+ PRK L K + ++ C YC F LQ L HM H +
Sbjct: 54 NNNPKRWSKPRKRSLLEM----EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Query: 560 PYK 562
Sbjct: 110 SGP 112
Score = 34.7 bits (79), Expect = 0.015
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 546 QYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQ 580
K + T ++C C ++ V L H
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 30.1 bits (67), Expect = 0.81
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 215 FKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHGG 274
F+C+ C ++ +L HM+ H + W LL +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETG-HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA- 77
Query: 275 YETSSLCYHCGYYSKNRSTLKNH-VRVEHGEN 305
+ C +CG+ ++ L H ++ +H +
Sbjct: 78 -QKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 3e-10
Identities = 74/534 (13%), Positives = 147/534 (27%), Gaps = 142/534 (26%)
Query: 9 LDDHVGKPSR----RRSLGV-----ESSVPKLKIKTETDDKSWEDKSLLEPEIKIKVEQG 59
+D + R E V K + + + L+ P IK EQ
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSP---IKTEQR 103
Query: 60 QATTSDETEEDDNTRQTSFKT--IISKYVGYNIDDLNTIDKRAKRTARAAS-------SG 110
Q S T R + + +KY + + ++A R A G
Sbjct: 104 Q--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLG 160
Query: 111 SDTPKKRRGRS---RSKGRDAPVSRKRNRRAK--TPSQEETDAKILQQQKNLEKKIKKM- 164
S G++ V K + + + +L+ + L +I
Sbjct: 161 S-------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 165 ----------------AKEERRRKIDLDKKPSD---MDNV--------F----------- 186
+ E RR + + + NV F
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 187 -ASL-DEMSSEEEEEEDWDEIHLGQFSPYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQF 244
+ D +S+ D + +P E K + + L+ + L EV
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKY-LDCRPQDLPR----EVLTT-- 325
Query: 245 SPY----------EFKCRVCDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTL 294
+P + +WK + DKL I+S + + S
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---LNVLEPAEYRKMF-DRLSVF 381
Query: 295 KNHVRVEHG------ENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY--HVCPHCGKK 346
+ + K + + ++ ++ +K + K
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSI-YLELK 436
Query: 347 FTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT---FYNYLRRHMRVHTNEKPY----- 398
+ E LH + + + KT+ + + FY+++ H++ + +
Sbjct: 437 VKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 399 ----------KCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHGYE 442
K + A+N + S+ N L + Y ++ N YE
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILN-------TLQQLKFYKPYICDNDPKYE 542
Score = 41.4 bits (96), Expect = 0.001
Identities = 69/528 (13%), Positives = 143/528 (27%), Gaps = 170/528 (32%)
Query: 142 SQEETDAKILQQQKNLEKKIKKMAKEERRRKID-LDKKPSDMDNVFA------------- 187
S+EE D I+ + + R L K +M F
Sbjct: 47 SKEEID-HIIMSKDAVSGT---------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 188 ---------SLDEMSSEEEEEEDWDEIHLGQFSPYEFKCRV-CDWKLNSYDKLLRHMDWD 237
S+ E+ + +++ + F+ Y R+ KL LR
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKY-NVSRLQPYLKLRQALLELRPAKNV 153
Query: 238 EVHLGQF------------SPYEFKCRVCD---W----KLNSYDKLLRHIKSDHGGYETS 278
+ G Y+ +C++ W NS + +L ++
Sbjct: 154 LID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-------- 204
Query: 279 SLCYH--CGYYSKNRSTLKNHVRVEHGENQAKR----KEKKIC-----DICSAEVVHLAI 327
L Y + S++ + +R+ + + +R K + C ++ +A+
Sbjct: 205 -LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---- 259
Query: 328 HKKHSHSGQYHVCPHCGKKF---------TRKAELQLHIKGIHLKHQLEKTYICEYCHKE 378
F TR ++ + H ++
Sbjct: 260 -----------------NAFNLSCKILLTTRFKQVTDFLSAATTTH-----ISLDHHSMT 297
Query: 379 FT-------FYNYLRRHMRVHT--NEK----PYKCKDCGAAF-NHNVSLKNHKNSSCPKL 424
T YL R E P + + + + N K+ +C KL
Sbjct: 298 LTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 425 YSY-ETYLKHLKTNHHGYEVSNLCYICGFF--SAK--RSTLA-----------HHIQDHI 468
+ E+ L L+ E + F SA L+ + + +
Sbjct: 356 TTIIESSLNVLEPA----EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 469 QPR-MKQKQICEICCAEVYHINGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKH 527
+ +KQ E I S + + L H + +
Sbjct: 412 HKYSLVEKQPKE----STISI-------PSIYLELKVKLEN----EYAL--HRSIVD-HY 453
Query: 528 ELRQTFVCEYCNKEFT---FLQYLKRHMRTHTNEKPYKCVCGLGFNFN 572
+ +TF + + F ++ H++ + + + +F
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Score = 28.7 bits (63), Expect = 8.4
Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 50/139 (35%)
Query: 462 HHIQDHIQPRMKQKQICEICCAEVYHIN--GHIKDKHSGFFLQCPHCPKTFPR---KTEL 516
HH H+ + Q ++ + + + C P+ E
Sbjct: 1 HHHHHHMDFETGEHQ---YQYKDILSVFEDAFVDN------FDCKDVQD-MPKSILSKEE 50
Query: 517 SNHIKGIHMKHELRQT-----------------FVCEYCNKEFTFL-------------- 545
+HI I K + T FV E + FL
Sbjct: 51 IDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 546 --QYLKRHMRTHTNEKPYK 562
Y+++ R + + + +
Sbjct: 109 TRMYIEQRDRLYNDNQVFA 127
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 55.3 bits (134), Expect = 3e-10
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 338 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHT 393
+ C C + +T + H H + K Y C +C KEFT + + H+++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSH--KRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRT--HTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ C+ C++ +T + RH T N K Y C C F ++ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 47.5 bits (114), Expect = 2e-07
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHT 556
+C C + + + H H + + C +C KEFT + H++
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSH--KRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 46.4 bits (111), Expect = 4e-07
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNHKNSS------------CPKLYSYETYLK-HLKT 436
E Y+CK C + H + H +S C K ++ + + H+K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 437 NHHG 440
H
Sbjct: 63 -IHK 65
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 553 RTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
T E Y+C VC + + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHY 30
Score = 32.9 bits (76), Expect = 0.025
Identities = 19/81 (23%), Positives = 24/81 (29%), Gaps = 29/81 (35%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVC 340
C C + S H H N K + C
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRN-----VK------------------------VYPC 43
Query: 341 PHCGKKFTRKAELQLHIKGIH 361
P C K+FTRK + H+K IH
Sbjct: 44 PFCFKEFTRKDNMTAHVKIIH 64
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY C++CG AF H+ L+ H+
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQ 32
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y CE C K F + L+ H R+HT EKP
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
CE C K F L+ H R HT EKP G
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPSSG 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPY C CG F + L+ H+
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQ 32
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T KPY C +CG AF+ SL H+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQ 32
Score = 47.5 bits (114), Expect = 9e-08
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
K Y+C C K F+ Y+ L H +HT EKP
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T KPY C CG F+ SL H+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQ 32
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L H HT EKP G
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG 46
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 52.3 bits (126), Expect = 4e-09
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 367 EKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ Y C E C + F+ + L RH+R+HT +KP++C+ C F+ + L H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 48.8 bits (117), Expect = 7e-08
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 517 SNHIKGIHMKHELRQTFVC--EYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNV 573
N++ + + + C E C++ F+ L RH+R HT +KP++C +C F+ +
Sbjct: 6 MNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 574 SLKNHK 579
L H
Sbjct: 64 HLTTHI 69
Score = 47.7 bits (114), Expect = 2e-07
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 329 KKHSHSGQY-HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYL 385
+ + CP C ++F+R EL HI+ H +K + C C + F+ ++L
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHL 65
Query: 386 RRHMRVHT 393
H+R HT
Sbjct: 66 TTHIRTHT 73
Score = 43.4 bits (103), Expect = 6e-06
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 504 PHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHT 556
C + F R EL+ HI+ H ++ F C C + F+ +L H+RTHT
Sbjct: 25 ESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 4e-09
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG F HN L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQ 32
Score = 47.9 bits (115), Expect = 7e-08
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F +YL RH R+HT EKP
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F YL RH R HT EKP G
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG 46
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPYKC CG F N L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQ 32
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 5e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY+C CG AF+H SL H+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ 32
Score = 44.8 bits (107), Expect = 8e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F+ L H R+H+ +KP
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ Q L H R H+ +KP G
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPY+C VCG F+ SL H+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ 32
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-09
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY+C C AF+H+ SL H+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQ 32
Score = 45.6 bits (109), Expect = 4e-07
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 359 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
G EK Y C+ C K F+ + L +H RVH+ EKP
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C+ C K F+ L +H R H+ EKP G
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPSSG 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPY+C VC F+ + SL H+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQ 32
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 7e-09
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKP+KC++CG F N L +H+
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQ 32
Score = 46.4 bits (111), Expect = 3e-07
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + CE C K FT + L H RVHT EKP
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
CE C K FT L H R HT EKP G
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46
Score = 40.2 bits (95), Expect = 4e-05
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ + EKP+KC CG F N L +H+
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQ 32
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 8e-09
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPYKC +CG F N L NH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32
Score = 45.9 bits (110), Expect = 3e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K FT ++L H R+HT EKP
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT +L H R HT EKP G
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46
Score = 39.4 bits (93), Expect = 7e-05
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ + EKPYKC CG F N L NH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 50.6 bits (122), Expect = 8e-09
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EKT+ C C F+ + LR H VH EKP
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
EK +KC++C F+ SL+ H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32
Score = 42.9 bits (102), Expect = 4e-06
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C+ F+ L+ H H EKP G
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPSSG 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ EK +KC C + F+ SL+ H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 8e-09
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG AF+ L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQ 32
Score = 46.0 bits (110), Expect = 3e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F+ + L RH R+HT EKP
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L RH R HT EKP G
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPYKC CG F+ L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQ 32
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 50.6 bits (122), Expect = 9e-09
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY CK+CG +F L H+
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQ 32
Score = 48.7 bits (117), Expect = 3e-08
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKD 402
EK Y C+ C K F + + L +H RVH+ EKP
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C+ C K F + L +H R H+ EKP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 39.5 bits (93), Expect = 8e-05
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPY C CG F + L H+
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQ 32
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPYKC +CG AF+ + L H+
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHR 32
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F + +L H R+HT +P
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 39.8 bits (94), Expect = 5e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C C K F +L H R HT +P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ + EKPYKC CG F+ + L H+
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHR 32
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG AF + +L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQ 32
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F ++ L H +HT EKP
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/32 (37%), Positives = 12/32 (37%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F L H HT EKP G
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPSSG 46
Score = 39.4 bits (93), Expect = 9e-05
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPYKC CG F + +L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQ 32
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG F N L H+
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQ 32
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F ++L RH +HT EKP
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F +L RH HT EKP G
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPSSG 46
Score = 39.4 bits (93), Expect = 7e-05
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPYKC CG F N L H+
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQ 32
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC C +F + SL H+
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQ 32
Score = 47.5 bits (114), Expect = 1e-07
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C+ CHK F + + L H R+HT EKP
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C+ C+K F + L H R HT EKP G
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG 46
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPYKC VC F + SL H+
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQ 32
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EK YKC +CG F+ N L H+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQ 32
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F+ + L +H ++HT EKP
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 4e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L +H + HT EKP G
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG 46
Score = 39.0 bits (92), Expect = 9e-05
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EK YKC CG F+ N L H+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQ 32
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 51.2 bits (123), Expect = 1e-08
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 356 HIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNV 411
G + +++IC + C K + ++L+ H R HT EKP+ C K C F +
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 412 SLKNHK 417
L H+
Sbjct: 64 ELSRHR 69
Score = 50.8 bits (122), Expect = 1e-08
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 517 SNHIKGIHMKHELRQTFVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKCV---CGLGFNF 571
S+ G + ++ +C + C K + +LK H RTHT EKP+ C C F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 572 NVSLKNHKQK 581
+ L H++
Sbjct: 62 SDELSRHRRT 71
Score = 43.5 bits (103), Expect = 5e-06
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 324 HLAIHKKHSHSGQYHVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEF 379
+ + S + H+C H CGK + + + L+ H + H EK + C + C + F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR----THTGEKPFSCSWKGCERRF 59
Query: 380 TFYNYLRRHMRVH 392
+ L RH R H
Sbjct: 60 ARSDELSRHRRTH 72
Score = 32.4 bits (74), Expect = 0.051
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 503 CPH--CPKTFPRKTELSNHIKGIHMKHELRQTFVCEY--CNKEFTFLQYLKRHMRTH 555
C H C KT+ + + L H + H + F C + C + F L RH RTH
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTR----THTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKP++C++CG +F+ N L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C C K F+F + L H R+HT E P
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+F L H R HT E P G
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPSSG 46
Score = 39.1 bits (92), Expect = 9e-05
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKP++C CG F+FN L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKP++C +CG +F+ + L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 46.3 bits (111), Expect = 3e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C C K F+ + L H R+HT EKP
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L H R HT EKP G
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPSSG 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKP++C CG F+ + L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKP+ C DCG AF+ ++ L H+
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32
Score = 45.2 bits (108), Expect = 8e-07
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C C K F+ + L +H R+HT EKP
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C C K F+ L +H R HT EKP G
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKP+ C+ CG F+ ++ L H+
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC+ CG AF + L H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHH 32
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C+ C K F ++L +H VH+ E+P
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C+ C K F +L +H H+ E+P G
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPSSG 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPYKC VCG F + L H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHH 32
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKP+KCK+CG AF N+ L +H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHL 32
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C+ C K F +L H+R+HT EKP
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 9e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C+ C K F +L H+R HT EKP G
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ + EKP+KC CG F N+ L +H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHL 32
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.9 bits (120), Expect = 1e-08
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG AF N S H+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ 32
Score = 45.3 bits (108), Expect = 6e-07
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F + +H R+HT ++P
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F +H R HT ++P G
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPYKC+ CG F N S H+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ 32
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY+C CG AF+ SL H+
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQ 32
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 401
EK Y C C K F+ + L H +HT +KP
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L H HT +KP G
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPSSG 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPY+C CG F+ SL H+
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQ 32
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKP+KC CG +F L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHS 32
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCG 404
EK + C+ C K F + L RH VHT EKP G
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP-SSG 46
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C+ C K F L RH HT EKP G
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46
Score = 40.2 bits (95), Expect = 4e-05
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKP+KC +CG F L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHS 32
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPY C CG AF + L H+
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQ 32
Score = 47.1 bits (113), Expect = 1e-07
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y+C+YC K F L RH R+HT EKP
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
+VC+YC K F L RH R HT EKP G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ + EKPY C CG F + L H+
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQ 32
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC+ CG +N +L H+
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ 32
Score = 46.4 bits (111), Expect = 3e-07
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 359 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
G EK Y CE C K + L H +VHT E+P
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
CE C K + L H + HT E+P G
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPYKC CG G+N +L H+
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ 32
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG F N L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR 32
Score = 45.2 bits (108), Expect = 6e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K FT ++L RH +HT EKP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT +L RH HT EKP G
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPSSG 46
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPYKC CG F N L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR 32
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 2e-08
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC++CG F L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHH 32
Score = 48.3 bits (116), Expect = 6e-08
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y CE C K F L H VHT EKP
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
CE C K F + L H HT EKP G
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPYKC CG GF L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHH 32
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 2e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG AF SL H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQ 32
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F + L H H+ EKP
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 42.1 bits (100), Expect = 8e-06
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F L H TH+ EKP G
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPSSG 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPYKC CG F SL H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQ 32
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 49.4 bits (119), Expect = 2e-08
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKPY+CK+CG AF+ L H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 45.2 bits (108), Expect = 8e-07
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C+ C K F+ +L +H RVHT EKP
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C+ C K F+ +L +H R HT EKP G
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKPY+C CG F+ L H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 2e-08
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T E+PY C CG AF +L H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E+ YIC C K FT + L +H ++HT EKP
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 7e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
++C C K FT L +H + HT EKP G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ T E+PY C VCG F +L H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-08
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C+ C F++ L +H+R+H P G
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPSSG 46
Score = 48.4 bits (116), Expect = 5e-08
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C+ C F++ L +H+R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 48.0 bits (115), Expect = 7e-08
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKP++CK+CG F+ + SL H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 40.3 bits (95), Expect = 4e-05
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKP++C CG+ F+++ SL H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 2e-08
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPYKC+DCG +N ++L H+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ 32
Score = 48.3 bits (116), Expect = 6e-08
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
+EK Y CE C K + L H RVH EK
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 40.9 bits (97), Expect = 2e-05
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
CE C K + L H R H EK G
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG 46
Score = 39.8 bits (94), Expect = 7e-05
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ + EKPYKC CG G+N ++L H+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-08
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EK Y CK+CG +F+ L H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHE 32
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C+ C K F+ L +H R+H+ EKP
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C+ C K F+ L +H R H+ EKP G
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGPSSG 46
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EK Y C CG F+ L H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHE 32
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 3e-08
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKPYKC DCG AF L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K FT + L H + HT E+
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT L H ++HT E+ G
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPSSG 46
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKPYKC CG F L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 3e-08
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY+C +CG AF +L H+
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQ 32
Score = 45.6 bits (109), Expect = 5e-07
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F L +H R+HT EKP
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
+ C C K F L +H R HT EKP G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPSSG 46
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPY+C CG F +L H+
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQ 32
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPY+C +CG AF L H+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHE 32
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F + + L H R H
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 39.4 bits (93), Expect = 8e-05
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ + EKPY+C CG F + L H+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHE 32
Score = 38.7 bits (91), Expect = 1e-04
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
+ C C K F + L H RTH
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 3e-08
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY C CG AF + L H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 401
EK Y C C K F +L +H+RVHT E
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 42.9 bits (102), Expect = 5e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
+ C C K F +L +H+R HT E G
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSSG 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPY C VCG F + L H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 3e-08
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKPY C +CG AF +L H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK YIC C K FT + L +H ++HT +KP
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
++C C K FT L +H + HT +KP G
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKPY C CG F +L H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-08
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKP+KC +CG ++N V L H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 44.8 bits (107), Expect = 9e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C C K + +L +H RVHT EKP
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 7e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C C K + +L +H R HT EKP G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKP+KC CG +N V L H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 48.6 bits (117), Expect = 3e-08
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPY 561
+ CE C F LQ LK H+R HT P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 48.6 bits (117), Expect = 3e-08
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
EKPY C+ CG F H +LK+H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 398
EK Y CE C F L+ H+R+HT P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 40.9 bits (97), Expect = 2e-05
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ EKPY C +CG F +LK+H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-08
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKPYKC DCG +F L+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K FT+ + LR H + HT E+
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT+ L+ H + HT E+ G
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKPYKC CG F + L+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 3e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG F N L NH+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQ 32
Score = 45.6 bits (109), Expect = 5e-07
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K FT ++L H R+HT KP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT +L H R HT KP G
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPYKC CG F N L NH+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQ 32
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.7 bits (117), Expect = 4e-08
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
EKPYKC+ CGA F L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 398
EK Y CE C F +LR H+ +HT P
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 44.8 bits (107), Expect = 9e-07
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPY 561
CE C F + +L+ H+ HT P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ EKPYKC CG F L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+K +KC +C F + SL H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 46.4 bits (111), Expect = 3e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
+K + C C K FT + L H R+HT EKP
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/32 (43%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT L H R HT EKP G
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPSSG 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ +K +KC C F + SL H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKPY+C +CG AF +L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K FT + L H ++HT EKP
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 9e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
+ C C K FT L H + HT EKP G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKPY+C CG F +L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKP+KC +CG F+ +L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C C K F+ + L H ++HT EKP
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C C K F+ L H + HT EKP G
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG 46
Score = 39.0 bits (92), Expect = 9e-05
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKP+KCV CG GF+ +L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
EK YKC CG F+ + L+ H+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ 32
Score = 47.9 bits (115), Expect = 8e-08
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 359 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
G EK Y C+ C KEF+ ++L+ H RVHT EKP
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C+ C KEF+ +L+ H R HT EKP G
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPSSG 46
Score = 39.4 bits (93), Expect = 9e-05
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ EK YKC VCG F+ + L+ H+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ 32
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T ++PY+C +CG AF SL H+
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHR 32
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 401
++ Y C C K F + L H R HT EKP
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F L H R+HT EKP G
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPSSG 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T ++PY+C+ CG F SL H+
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHR 32
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T +KPY+C +CG AF N SL H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 41.8 bits (99), Expect = 1e-05
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMR-VHTNEKPYKC 400
+K Y C C K F L RH R HT EKP
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 37.5 bits (88), Expect = 4e-04
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T +KPY+C+ CG F N SL H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 37.2 bits (87), Expect = 5e-04
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 535 CEYCNKEFTFLQYLKRHMR-THTNEKPYKCVCG 566
C C K F L RH R HT EKP G
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG 47
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-08
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T E+P+KC +CG +F + L H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 45.2 bits (108), Expect = 7e-07
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E+ + C C K F +L +H R+HT EKP
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F +L +H R HT EKP G
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T E+P+KC CG F + L H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
Y C C K F+ L H R+HT EKP
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
PYKC C +F+ + L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L H R HT EKP G
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG 46
Score = 36.7 bits (86), Expect = 8e-04
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ PYKC C F+ + L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-08
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ EKP++C++CG F N L +H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 46.4 bits (111), Expect = 3e-07
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + CE C K FT ++L H RVHT EKP
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 41.8 bits (99), Expect = 1e-05
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F CE C K FT +L H R HT EKP G
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSSG 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ + EKP++C CG F N L +H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T KPY C +CG AF L H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT 32
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
K Y+C C K F +YL H R HT E
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 42.1 bits (100), Expect = 9e-06
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
+VC C K F YL H RTHT E
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 38.2 bits (90), Expect = 2e-04
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T KPY C CG F L H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT 32
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-08
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 401
+K Y C+ C K F +L +H RVHT E+
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ +KPY+CK+C F L HK
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHK 32
Score = 41.0 bits (97), Expect = 2e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C+ C K F + +L +H R HT E+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ + +KPY+C C F L HK
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHK 32
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.2 bits (116), Expect = 6e-08
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKP++C +C AFN +L H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 45.9 bits (110), Expect = 3e-07
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C C K F + L H R HT EKP
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 43.2 bits (103), Expect = 3e-06
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C C K F L H RTHT EKP G
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPSSG 46
Score = 38.2 bits (90), Expect = 2e-04
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKP++C C FN +L H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-08
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T KPY+C +CG AF+ L H+
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
Score = 46.8 bits (112), Expect = 2e-07
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 359 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
G K Y C C K F+ + L RH RVHT EKP
Sbjct: 1 GSSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L RH R HT EKP G
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPSSG 46
Score = 36.4 bits (85), Expect = 0.001
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T KPY+C CG F+ L H+
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-08
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
EKPY+C +CG +F+ + L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHW 32
Score = 47.2 bits (113), Expect = 1e-07
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
+ EK Y C C K F+ L +H HT EKP
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 41.8 bits (99), Expect = 1e-05
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L +H THT EKP G
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGPSSG 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ EKPY+C CG F+ + L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHW 32
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.9 bits (115), Expect = 7e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ EKP+KC++CG F N +H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 47.2 bits (113), Expect = 2e-07
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCG 404
EK + CE C K F + H R H+ EKP G
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46
Score = 44.9 bits (107), Expect = 1e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F CE C K F H R+H+ EKP G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46
Score = 39.1 bits (92), Expect = 9e-05
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ + EKP+KC CG GF N +H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-08
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKPY+C CG +F L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 45.6 bits (109), Expect = 5e-07
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 401
EK Y C C K FT + L H ++HT EKP
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT L H + HT EKP G
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ T EKPY+C +CG F L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-08
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T +KPYKC +CG F N L H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHR 32
Score = 46.0 bits (110), Expect = 4e-07
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
+K Y C C K FT ++L RH +HT EKP
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 9e-06
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT +L RH HT EKP G
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T +KPYKC CG F N L H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHR 32
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 47.6 bits (114), Expect = 8e-08
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
EKPY+C CG AF+ SL H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 398
EK Y C+ C K F+ L H+RVHT P
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 37.2 bits (87), Expect = 5e-04
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ EKPY+C CG F+ SL H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPY 561
C+ C K F+ L H+R HT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 9e-08
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 359 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
G EK Y C C K F+ + L H R HT EKP
Sbjct: 1 GSSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EKPY C +CG F+ L H+
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQ 32
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C C K F+ L H RTHT EKP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 5e-04
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ + EKPY C CG F+ L H+
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQ 32
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 9e-08
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ EKPYKC +CG + + L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K + L H RVHT EK
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K + L H R HT EK G
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG 46
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ + EKPYKCV CG G+ + L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 9e-08
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E+ + C C K F ++L H+R+H+ EK
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ E+P+KC +CG F L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C C K F +L H+R H+ EK G
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPSSG 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ + E+P+KC CG GF L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 9e-08
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKPY+CK C AF L H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 44.8 bits (107), Expect = 8e-07
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 401
EK Y C+ C K FT +L +H + HT EKP
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 4e-05
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C+ C+K FT +L +H +THT EKP G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
Score = 36.7 bits (86), Expect = 8e-04
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ T EKPY+C VC F L H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 48.5 bits (115), Expect = 1e-07
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 385 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPK 423
+ ++H ++ KC CG F +L K C K
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEK 44
Score = 42.0 bits (98), Expect = 2e-05
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 324 HLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYN 383
+K + C CG F R++ KT +CE C K+
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-----------LSRRKTPMCEKCRKDSCQEA 53
Query: 384 YLRRHMRVHTNEKPY 398
L + + +K
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 40.0 bits (93), Expect = 1e-04
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
H +++ C C F + K C+ C +L +
Sbjct: 13 HLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDE 59
Score = 35.4 bits (81), Expect = 0.004
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPY 561
+C C F R++ LS +T +CE C K+ L + + +K
Sbjct: 20 KCSKCGIIFIRRSTLSRR-----------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 33.1 bits (75), Expect = 0.024
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 548 LKRHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ + H ++ KC CG+ F +L K
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK 38
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T E P+ C +CG F H +L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E +IC C K FT L H ++HT E+P
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 42.1 bits (100), Expect = 9e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F+C C K FT L H + HT E+P G
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPSSG 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T E P+ C CG F +L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T K ++C +CG AF +L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 45.2 bits (108), Expect = 7e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
K + C C K FT + L H ++HT EKP
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 6e-05
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C C K FT L H + HT EKP G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T K ++C CG F +L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKPY+C DCG +F L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 46.0 bits (110), Expect = 4e-07
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F + L H R+HT E P
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/32 (37%), Positives = 12/32 (37%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F L H R HT E P G
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPSSG 46
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKPY+C CG F L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T E+ Y+C +CG AF +L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 44.8 bits (107), Expect = 9e-07
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E+ Y C C K F + L H R+HT EKP
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 40.9 bits (97), Expect = 2e-05
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
+ C C K F L H R HT EKP G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSSG 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T E+ Y+C CG F +L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK + C C K F+ +YL H + H EKP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C C K F+ YL H +TH EKP G
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG 44
Score = 39.4 bits (93), Expect = 7e-05
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ EKP+ C C AF+ L H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 29.8 bits (68), Expect = 0.19
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 553 RTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ EKP+ C C F+ L H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E+ Y C C K F +++L H++ H EK
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ E+PY C +CG F + L H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL 32
Score = 44.0 bits (105), Expect = 2e-06
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
+ C C K F +L H++ H EK G
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ + E+PY C CG F + L H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL 32
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.2 bits (112), Expect = 1e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 363 KHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDC 403
+ K CE C K F +L RH H+ EKPY
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 47.2 bits (112), Expect = 1e-07
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 526 KHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
R+ CE C K F + +L RH +H+ EKPY
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 30.7 bits (69), Expect = 0.11
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 419
K C+ CG F L HK S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG F N L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 45.2 bits (108), Expect = 6e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K FT ++L RH +HT EKP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT +L RH HT EKP G
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 36.3 bits (85), Expect = 9e-04
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPYKC CG F N L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 1e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K F+ +YL HMR H+ EKP
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 47.2 bits (113), Expect = 1e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
EKPY C +CG AF+ L H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHM 32
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
+ C C K F+ YL HMRTH+ EKP G
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46
Score = 36.8 bits (86), Expect = 6e-04
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ EKPY C CG F+ L H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHM 32
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T E PY+C +CG AF+ L +H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E Y C C K F+ L H R H EKP
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 40.2 bits (95), Expect = 5e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F+ L H RTH EKP G
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGPSSG 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T E PY+C CG F+ L +H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY+C +C AFN +L H+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQ 32
Score = 45.9 bits (110), Expect = 3e-07
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 359 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
G EK Y C C K F + L H R HT E
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 39.8 bits (94), Expect = 5e-05
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C C K F L H RTHT E
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.1 bits (87), Expect = 6e-04
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPY+C C FN +L H+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQ 32
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK YIC C K F ++L RH R+HT EKP
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPY C +CG +F L H+
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR 32
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
++C C K F +L RH R HT EKP G
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPSSG 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ T EKPY C CG F L H+
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR 32
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T EKPYKC +CG F N L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 45.6 bits (109), Expect = 5e-07
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C K FT ++L RH RVHT KP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K FT +L RH R HT KP G
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPSSG 46
Score = 36.3 bits (85), Expect = 8e-04
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHK 579
+ T EKPYKC CG F N L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.8 bits (112), Expect = 2e-07
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
E+ ++C DCG F + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 45.6 bits (109), Expect = 6e-07
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E+ + C C K F + +H R+HT EKP
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F +H R HT EKP G
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSSG 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ E+ ++C CG F + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK C C K F + + L H R H ++K
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T EKP KC +CG AF L H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F + L H RTH ++K G
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG 46
Score = 36.8 bits (86), Expect = 7e-04
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T EKP KC CG F + L H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T E+ Y+C +CG AF +L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E+ Y C C K F + L H R+H EKP
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 39.8 bits (94), Expect = 5e-05
Identities = 12/32 (37%), Positives = 12/32 (37%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C K F L H R H EKP G
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPSSG 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T E+ Y+C CG F +L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
T+ K Y C +CG AF L H+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQ 32
Score = 37.2 bits (87), Expect = 5e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
K+Y C C K FT +L RH ++HT +
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHKQ 580
+ T+ K Y C CG F L H++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
Score = 32.2 bits (74), Expect = 0.029
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C C K FT + +L RH + HT +
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 46.8 bits (112), Expect = 2e-07
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T +KP++C CG +F +L H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 359 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
G +K + C +C K F L H R+HT EK
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 39.8 bits (94), Expect = 5e-05
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
F C +C K F L H R HT EK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T +KP++C CG F +L H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 47.0 bits (111), Expect = 2e-07
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 370 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 419
YICE C + L++H+R HT+ +PY C C +F +L H S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 43.2 bits (101), Expect = 5e-06
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 338 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
++C CG + + + L+ HI+ H + Y C YC+ F L +HM+ + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR----THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 40.9 bits (95), Expect = 4e-05
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
++CE C LK+H+RTHT+ +PY C C F +L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 38.2 bits (88), Expect = 4e-04
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 503 CPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
C C + + L HI+ H + + C YCN F L +HM++ + K
Sbjct: 4 CEECGIRXKKPSMLKKHIR----THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 26.6 bits (58), Expect = 3.7
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 249 FKCRVCDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGE 304
+ C C + L +HI++ C +C + K + L H++ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTD--VRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 25.8 bits (56), Expect = 7.7
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 281 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSG 335
C CG K S LK H+R C+ +L H K S +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTY---CNFSFKTKGNLTKHMK-SKAH 54
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
K++ C C + FT ++L +H R+HT EKP
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
++ K ++C +CG F L H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C C + FT +L +H R HT EKP G
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
+ ++ K ++C CG GF L H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 46.4 bits (111), Expect = 3e-07
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T KPY C C F+ L H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
K Y C C K F+ + L H R HT KP
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
+ C C K F+ L H R+HT KP G
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG 46
Score = 37.1 bits (87), Expect = 6e-04
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T KPY C C F+ L H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 3e-07
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EK + C +CG F + +L+ H+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ 32
Score = 44.9 bits (107), Expect = 9e-07
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK++ C+ C K F + + LR H RVH EK
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 39.1 bits (92), Expect = 9e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
C+ C K F ++ L+ H R H EK G
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPSSG 46
Score = 36.8 bits (86), Expect = 6e-04
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ + EK + C CG F + +L+ H+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ 32
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 46.1 bits (110), Expect = 4e-07
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 359 GIHL-KHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC 400
G EK + C + C F+ + L RH R H+ KP
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 45.0 bits (107), Expect = 9e-07
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 533 FVCEY--CNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
F C + C F+ L RH R+H+ KP G
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG 48
Score = 34.6 bits (80), Expect = 0.004
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 551 HMRTHTNEKPYKCV---CGLGFNFNVSLKNHKQK 581
+ T EKP+ C CG F+ + L H++
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 47.6 bits (112), Expect = 4e-07
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 328 HKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRR 387
+ + + C C K + E H + +C YC F +
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR------NAAVCPYCSLRFFSPELKQE 60
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
H K C +C F + S+ H+
Sbjct: 61 H-ESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 46.0 bits (108), Expect = 2e-06
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 491 HIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKR 550
+ QC C E +H + R VC YC+ F + +
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC------RNAAVCPYCSLRFFSPELKQE 60
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
H + K C C F + S+ H+ +
Sbjct: 61 H-ESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 35.3 bits (80), Expect = 0.011
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 524 HMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQKC 582
E ++ + C CN + + L H R N C C L F + H+ KC
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKC 65
Score = 32.2 bits (72), Expect = 0.11
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 10/103 (9%)
Query: 269 KSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIH 328
+ + C C + +H R+ +C CS +
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--------NAAVCPYCSLRFFSPELK 58
Query: 329 KKH--SHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKT 369
++H + C C + F + H +H ++ + T
Sbjct: 59 QEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPT 101
Score = 32.2 bits (72), Expect = 0.12
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 365 QLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKL 424
+ ++ Y C C+ + + H R+ N C C F + H++ K
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 425 YSYETYLKHLKTNHH 439
+ ++ K++
Sbjct: 70 LTCLECMRTFKSSFS 84
Score = 27.6 bits (60), Expect = 4.9
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 11/97 (11%)
Query: 215 FKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHGG 274
++CR+C+ KL+S + H + C C + S + H
Sbjct: 17 YQCRLCNAKLSSLLEQGSHE--------RLCRNAAVCPYCSLRFFSPELKQEHESKCEYK 68
Query: 275 YETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKE 311
T C C K+ ++ H H +N
Sbjct: 69 KLT---CLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 44.4 bits (106), Expect = 1e-06
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E Y C C K F + L H R H E
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.1 bits (100), Expect = 7e-06
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ E PY+C +CG AFN L +H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 39.4 bits (93), Expect = 7e-05
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
+ C C K F L H RTH E
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 33.3 bits (77), Expect = 0.011
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 553 RTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ E PY+C CG FN L +H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
E Y C C K F+ + L H + H+ +
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
T E PY+C +CG F+ L +H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 37.9 bits (89), Expect = 3e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C C K F+ L H +TH+ +
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 34.4 bits (80), Expect = 0.005
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ T E PY+C CG F+ L +H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 42.7 bits (101), Expect = 6e-06
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 399
E Y+C C K FT L H R + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 40.3 bits (95), Expect = 3e-05
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
E PY C CG +F SL H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 36.9 bits (86), Expect = 6e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYK 562
++C C K FT L H R+ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 30.3 bits (69), Expect = 0.11
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ E PY C CG F SL H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 42.2 bits (100), Expect = 8e-06
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ ++ Y+C++CG +F SL H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 367 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 398
++ Y C+ C K F L H R+HT P
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 34.5 bits (80), Expect = 0.005
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 535 CEYCNKEFTFLQYLKRHMRTHTNEKPY 561
C+ C K F L H R HT P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 30.6 bits (70), Expect = 0.089
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 553 RTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ ++ Y+C CG F SL H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 41.5 bits (98), Expect = 1e-05
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 390 RVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ EKPY C +C F+ N L H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 37.3 bits (87), Expect = 4e-04
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 400
EK Y C C + F+ N L +H ++HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.5 bits (77), Expect = 0.011
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 553 RTHTNEKPYKCV-CGLGFNFNVSLKNH 578
+ EKPY C C F+ N L H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 32.3 bits (74), Expect = 0.023
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC 563
+ C C + F+ L +H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 41.5 bits (98), Expect = 1e-05
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 532 TFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+FVCE C + F ++LKRH R+HTNEK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 36.5 bits (85), Expect = 5e-04
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
++++CE C + F +L+RH R HTNEK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 42.6 bits (99), Expect = 4e-05
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 361 HLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
L + ++C C F+ L++H+R E C C F S +H
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
Score = 37.6 bits (86), Expect = 0.002
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 524 HMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKC-VCGLGFNFNVSLKNHKQK 581
+ + FVC C F+ LK+H+R E C VC F S +H K
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCK 122
Score = 37.6 bits (86), Expect = 0.002
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 7/130 (5%)
Query: 428 ETYLKHLKTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDHIQPRMKQKQICEICCAEVYH 487
E+ + + ++ + L + I+ +K E +
Sbjct: 3 ESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSY 62
Query: 488 INGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQY 547
+ + K F+ CP C F L HI T VC C KEFT
Sbjct: 63 LYRLLASKAISQFV-CPLCLMPFSSSVSLKQHI------RYTEHTKVCPVCKKEFTSTDS 115
Query: 548 LKRHMRTHTN 557
H+ N
Sbjct: 116 ALDHVCKKHN 125
Score = 34.1 bits (77), Expect = 0.037
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 162 KKMAKEERRRKIDLDKKPSDMDNVFASLDEMSSEEEEEEDWDEIHLGQFSPYEFKCRVCD 221
+ EE +R L + + + + +E + L + +F C +C
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCL 81
Query: 222 WKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHGG 274
+S L +H+ + E + C VC + S D L H+ H
Sbjct: 82 MPFSSSVSLKQHIRYTE--------HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 33.4 bits (75), Expect = 0.066
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 11/114 (9%)
Query: 338 HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 395
++ H T + + H K + + + + +
Sbjct: 13 YLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI 72
Query: 396 KPYKCKDCGAAFNHNVSLKNHKNSS--------CPKLYSYETYL-KHLKTNHHG 440
+ C C F+ +VSLK H + C K ++ H+ H+
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 33.0 bits (74), Expect = 0.10
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 307 AKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIH 361
+K + +C +C K+H ++ VCP C K+FT H+ H
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 31.4 bits (70), Expect = 0.35
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 240 HLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVR 299
L + +F C +C +S L +HI+ C C + + +HV
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV----CPVCKKEFTSTDSALDHVC 121
Query: 300 VEHG 303
+H
Sbjct: 122 KKHN 125
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 39.8 bits (92), Expect = 3e-04
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 328 HKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRR 387
+ G Y C +C + H+ H L +Y+C C+ Y+ L
Sbjct: 10 QQNKKVEGGY-ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 388 H-MRVHTNEKPYKCK 401
H ++ H E+ +K
Sbjct: 69 HNLKYHPGEENFKLT 83
Score = 39.8 bits (92), Expect = 3e-04
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 486 YHINGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFL 545
+H N K G+ +C +C P + H+ H L ++VC CN
Sbjct: 6 HHHNQQNKKVEGGY--ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 546 QYLKRH-MRTHTNEKPYKC 563
L H ++ H E+ +K
Sbjct: 64 DALSEHNLKYHPGEENFKL 82
Score = 34.0 bits (77), Expect = 0.029
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 15/87 (17%)
Query: 381 FYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYETYLKHLKTNHHG 440
+++ + + E Y+CK C H +S P + +Y
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSY---------- 51
Query: 441 YEVSNLCYICGFFSAKRSTLAHHIQDH 467
+C C F + + L+ H +
Sbjct: 52 -----VCVECNFLTKRYDALSEHNLKY 73
Score = 33.6 bits (76), Expect = 0.039
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 215 FKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHGG 274
++C+ C ++ + H+D H + C C++ YD L H H G
Sbjct: 19 YECKYCTFQTPDLNMFTFHVD--SEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Query: 275 YETSSL 280
E L
Sbjct: 77 EENFKL 82
Score = 32.1 bits (72), Expect = 0.12
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 517 SNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRT-HTN---EKPYKCV-CGLGFNF 571
+H ++ + C+YC + L H+ + H N Y CV C
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 572 NVSLKNHKQKC 582
+L H K
Sbjct: 63 YDALSEHNLKY 73
Score = 30.1 bits (67), Expect = 0.57
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 462 HHIQDHIQPRMKQKQICEICC---AEVYHINGHIKDKHSGFFLQ----CPHCPKTFPRKT 514
HH + +++ C+ C ++ H+ +H L C C R
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 515 ELSNHIKGIH 524
LS H H
Sbjct: 65 ALSEHNLKYH 74
Score = 29.7 bits (66), Expect = 0.68
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 266 RHIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEK-KICDICSAEVVH 324
+ K GGYE C +C + + + + HV EH C+ +
Sbjct: 10 QQNKKVEGGYE----CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 325 LAIHKKHSHSGQ 336
L+ H H G+
Sbjct: 66 LSEHNLKYHPGE 77
Score = 29.7 bits (66), Expect = 0.76
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 296 NHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY----HVCPHCGKKFTRKA 351
+H + + E K C + ++ H H +VC C R
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 352 ELQLHIKGIH 361
L H H
Sbjct: 65 ALSEHNLKYH 74
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 37.3 bits (87), Expect = 4e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 388 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
R T KP++C DC +F+ + L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 31.2 bits (71), Expect = 0.062
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 551 HMRTHTNEKPYKC-VCGLGFNFNVSLKNH 578
R T KP++C C F+ + L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 29.6 bits (67), Expect = 0.17
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTH 555
F C C++ F+ +L H + H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
Score = 29.6 bits (67), Expect = 0.18
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 363 KHQLEKTYICEYCHKEFTFYNYLRRHMRVH 392
K + C C + F+ ++L H + H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.78
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 332 SHSGQY-HVCPHCGKKFTRKAELQLHIK 358
+G CP C + F+R L LH K
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 26.5 bits (59), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 502 QCPHCPKTFPRKTELSNHIKGIHM 525
QCP C ++F R L+ H K HM
Sbjct: 13 QCPDCDRSFSRSDHLALHRK-RHM 35
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 37.1 bits (85), Expect = 5e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
K + CEYC+K F F + L+ H+R+HTNEK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 36.8 bits (84), Expect = 6e-04
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 531 QTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+ F CEYCNK F F L+ H+R HTNEK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 0.001
Identities = 43/273 (15%), Positives = 79/273 (28%), Gaps = 65/273 (23%)
Query: 265 LRHIKSDHGGYETS-----SLCYHCGYYSKNRSTLK---NHVRVEHGENQAKRKEKKICD 316
R + HG E + + S L+ N + E E A E
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIA-------SQLQEQFNKILPEPTEGFAADDE----P 54
Query: 317 ICSAEVV-----HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIH-LKHQLEKT 369
AE+V +++ + S GQ+ V C +F L IH L +L +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---LEGNDIHALAAKLLQE 111
Query: 370 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLY---- 425
+ NY+ R+ K N +L +L
Sbjct: 112 NDTTLVKTKELIKNYIT--ARIMAKRPFDK--------KSNSALFRAVGEGNAQLVAIFG 161
Query: 426 ---SYETYLKHLKTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDHIQPRMKQKQICEICC 482
+ + Y + L+ + Y + TL+ I+ + E
Sbjct: 162 GQGNTDDYFEELRDLYQTYH----VLVGDLIKFSAETLSELIRTTLD--------AEKVF 209
Query: 483 AEVYHINGHIKDKHS----GFFLQCPHCPKTFP 511
+ +I +++ + + L P + P
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLL---SIPISCP 239
Score = 36.2 bits (83), Expect = 0.039
Identities = 69/489 (14%), Positives = 120/489 (24%), Gaps = 209/489 (42%)
Query: 26 SSVPKLKIKTETDDKSWEDKSLLEPEIKI------KVEQGQATTSDETEEDDNTRQTSFK 79
+P+ DD E + E K VE + D+
Sbjct: 39 KILPEPTEGFAADD---EPTTPAELVGKFLGYVSSLVEPSKVGQFDQV------LNLCLT 89
Query: 80 TIISKYV-GYNI---------DDLNTIDKRAK--RTARAASSGSDTPKKRRGRSRSKGRD 127
+ Y+ G +I ++ T+ K + + A + P ++ S
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS------ 143
Query: 128 APVSRKRNRRAKTPSQ-----------EETDAKILQQ-----QKNLEKKIKKMAKEERRR 171
A A+ + EE L+ + IK A+
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEE-----LRDLYQTYHVLVGDLIKFSAE----T 194
Query: 172 KIDLDKKPSDMDNVF-ASLDEMS--SEEEEEEDWD----------EIHLGQFSPYEFKCR 218
+L + D + VF L+ + D D I + Q + Y +
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 219 VCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVC-------------------DWK-- 257
+ LG F+P E + + W+
Sbjct: 255 L---------------------LG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 258 LNSYDKLLR---HIKSDHGGYETSSLCYHCGYYSKNRSTLKNHVR---VEHGENQAKRKE 311
S K + I G CY Y ++L + +E+ E
Sbjct: 293 FVSVRKAITVLFFI-----GVR----CYEA--YP--NTSLPPSILEDSLENNEGVP---- 335
Query: 312 KKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYI 371
P L I + + Q++ Y+
Sbjct: 336 ----------------------------SP------------MLSISNLTQE-QVQD-YV 353
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKN-HKN---SSCPK-LYS 426
+ +L +V +SL N KN S P+ LY
Sbjct: 354 NKTNS-------HLPAGKQVE------------------ISLVNGAKNLVVSGPPQSLYG 388
Query: 427 YETYLKHLK 435
L+ K
Sbjct: 389 LNLTLRKAK 397
Score = 30.4 bits (68), Expect = 2.5
Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 32/150 (21%)
Query: 121 SRSKG------RDAPVSRKRNRRAKTPSQEETDAKILQQQKNLEKKIKKMAKEERRRKI- 173
S+ +G + + ++ RA ++ IL N + E+ ++I
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 174 ----------DLDKKPSDMDNVFASLDEMSSEEEEEEDWDEIHLGQFS-PYEFKCRVCDW 222
+D K + +F ++E S+ + + QF+ P +
Sbjct: 1686 ENYSAMIFETIVDGKLK-TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 223 KLNSYDKLLRH---MDWDEV---H-LGQFS 245
+ L+ + D H LG+++
Sbjct: 1745 ------EDLKSKGLIPADATFAGHSLGEYA 1768
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.0 bits (83), Expect = 0.001
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
E + C C + FT NYL +H R H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 34.8 bits (80), Expect = 0.003
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 387 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 417
E P+KC C F L H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 32.1 bits (73), Expect = 0.026
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
F C C++ FT YL +H RTH +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 27.5 bits (61), Expect = 1.3
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 550 RHMRTHTNEKPYKCV-CGLGFNFNVSLKNHK 579
+ E P+KC C F L H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.5 bits (80), Expect = 0.004
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 533 FVC--EYCNKEFTFLQYLKRHMRTHTNEK 559
F+C YC K FT L+RH RTHT EK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 32.2 bits (74), Expect = 0.020
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 368 KTYIC--EYCHKEFTFYNYLRRHMRVHTNEK 396
+ ++C YC K FT + L+RH R HT EK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 38.1 bits (89), Expect = 0.007
Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 45/170 (26%)
Query: 74 RQTSFKTIISKYVGYNIDDLNTID-----------KRAKRTARA---------------A 107
Q I ++ GY I + +D K A+R A A
Sbjct: 232 EQYRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 108 SSGSDTPKKRRGR---SRSKGRDAPVSRKRN--RRAKTPSQEETDAKILQQQKNLEKKIK 162
+S SD R + +D P+SR R+ +E+ A K+ +
Sbjct: 291 ASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKA--------WRKQSR 342
Query: 163 KMAKEERRRKIDLDK-KPSDM-DNVFASLDEMSSEEEEEEDWDEIHLGQF 210
+ E + K P+ + +V+ EM ++ ++++ HL +
Sbjct: 343 RKVMEAFEQAERKPKPNPNLLFSDVYQ---EMPAQLRKQQESLARHLQTY 389
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 33.2 bits (75), Expect = 0.011
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
K Y+C +C ++F L+RH+R+HT EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.7 bits (66), Expect = 0.15
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+VC +C ++F L+RH+R HT EK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.1 bits (76), Expect = 0.011
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 530 RQTFVCEY--CNKEFTFLQYLKRHMRTHTNEK 559
++ +C C K + +L+ H+R HT E+
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 31.6 bits (72), Expect = 0.043
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 367 EKTYICEY--CHKEFTFYNYLRRHMRVHTNEK 396
+K +IC C K + ++LR H+R HT E+
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 32.5 bits (74), Expect = 0.024
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 532 TFVCEY--CNKEFTFLQYLKRHMRTHTNEK 559
TF C + C K F ++ H++TH ++
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 31.0 bits (70), Expect = 0.093
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 361 HLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEK 396
++K +KT+ C + C K F +R H++ H ++
Sbjct: 10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.0 bits (57), Expect = 4.6
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 339 VCPH--CGKKFTRKAELQLHIKGIHLK 363
C C K F R+ ++ HI+ HL+
Sbjct: 20 ECLFPGCTKTFKRRYNIRSHIQ-THLE 45
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.025
Identities = 6/65 (9%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 143 QEETDAKILQQQKNLEKKIKKMAKEERRRKIDL-DKKPSDMDNVFASLDEM------SSE 195
+E ++ I + ++ K+++++ + + + +K D++ E ++
Sbjct: 81 TQEPES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 196 EEEEE 200
++
Sbjct: 140 IADKA 144
Score = 30.1 bits (67), Expect = 1.3
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 116 KRRGRSRSKGRDAPVSRKRNRRAKTPSQEETDAKILQQQKNLEKKIK--KMAKEERRRKI 173
+ R R + DA S+ + + ++++ + +Q + +EK ++A + ++
Sbjct: 91 REEQRKRLQELDA-ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149
Query: 174 DLD 176
D D
Sbjct: 150 DAD 152
Score = 28.2 bits (62), Expect = 6.8
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 126 RDAPVSRKRNRRAKTPSQEETDAKILQQQKNLEKKIKKMAKEE-----RRRKIDLDKKPS 180
P S ++ R + +E DA K +E++ ++ AK++ +R+ ++K
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAA----SKVMEQEWREKAKKDLEEWNQRQSEQVEK--- 133
Query: 181 DMDNVFASLDEMSSEEEE---EEDWDEI 205
+ ++ + D D I
Sbjct: 134 -------NKINNRIADKAFYQQPDADII 154
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 31.6 bits (72), Expect = 0.041
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
++Y C +C +EF L HM VH ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 31.3 bits (71), Expect = 0.048
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 530 RQTFVCEYCNKEFTFLQYLKRHMRTHTNEK 559
+++ C +C +EF Q L HM H ++
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 35.6 bits (81), Expect = 0.051
Identities = 6/47 (12%), Positives = 11/47 (23%)
Query: 509 TFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTH 555
G+ + C C+ L H+ +H
Sbjct: 157 ATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.3 bits (75), Expect = 0.32
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 303 GENQAKRKEKKICDICSAEVVH---LAIHKKHSHSGQYHVCPHCGKKFTRKAELQLH 356
G + K +I + SA V + SG + C C +L H
Sbjct: 143 GGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH 199
Score = 32.5 bits (73), Expect = 0.56
Identities = 26/203 (12%), Positives = 59/203 (29%), Gaps = 5/203 (2%)
Query: 32 KIKTETDDKSWEDKSLLEPEIKIKVEQGQATTSDETEEDDNTRQTSFKTIISKYVGYNID 91
+I +T KS + Q + +++ TS +
Sbjct: 3 RIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARP----- 57
Query: 92 DLNTIDKRAKRTARAASSGSDTPKKRRGRSRSKGRDAPVSRKRNRRAKTPSQEETDAKIL 151
+ ++ + + + + ++G +R + K T Q + K
Sbjct: 58 GIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSK 117
Query: 152 QQQKNLEKKIKKMAKEERRRKIDLDKKPSDMDNVFASLDEMSSEEEEEEDWDEIHLGQFS 211
Q + I + R +D + + + S+ + + S
Sbjct: 118 AQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASS 177
Query: 212 PYEFKCRVCDWKLNSYDKLLRHM 234
+ ++C VC L S L H+
Sbjct: 178 GHGYQCHVCSAVLFSPLDLDAHV 200
Score = 31.4 bits (70), Expect = 0.98
Identities = 11/95 (11%), Positives = 23/95 (24%), Gaps = 3/95 (3%)
Query: 301 EHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIK-- 358
+ + + + D L+ + G + P + + +
Sbjct: 109 QAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPAR 168
Query: 359 -GIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVH 392
G+ Y C C L H+ H
Sbjct: 169 VGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.8 bits (79), Expect = 0.060
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 357 IKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 416
+ I L Y +Y + + H + EK + + ++ L+
Sbjct: 169 CRDIRPGEWLRVWYSEDYMKR-LHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Query: 417 KNSSCPK 423
+ S +
Sbjct: 228 IHLSVLR 234
Score = 31.3 bits (70), Expect = 0.76
Identities = 5/53 (9%), Positives = 14/53 (26%)
Query: 344 GKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEK 396
+ + ++ + EK E + LR + + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 30.6 bits (68), Expect = 1.3
Identities = 6/81 (7%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 484 EVYHINGHI-----KDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYC 538
+ + I +D G +L+ + + ++ + + E
Sbjct: 156 LAFQHSERIYFRACRDIRPGEWLRVWYSED-YMKRLHSMSQETIHRNLARGEKRLQREKS 214
Query: 539 NKEFTFLQYLKRHMRTHTNEK 559
+ + L+ + +
Sbjct: 215 EQVLDNPEDLRGPIHLSVLRQ 235
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 34.9 bits (81), Expect = 0.075
Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 46/167 (27%)
Query: 74 RQTSFKTIISKYVGYNIDDLNTID-----------KRAKRTARA---------------A 107
QT TI K + I +D K A AR
Sbjct: 214 HQTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGP 272
Query: 108 SSGSDTPKKRRGR---SRSKGRDAPVSRKRN--RRAKTPSQEETDAKILQQQKNLEKKIK 162
S +D + R + + + +D P+ R R ++E + + ++I+
Sbjct: 273 HSSADDDSRYRPKEEVAFWRKKD-PIPRFRRFLEARGLWNEEWEED--------VREEIR 323
Query: 163 KMAKEERRRKIDLDK-KPSDM-DNVFASLDEMSSEEEEEEDWDEIHL 207
+ + + P M ++VFA E +E + L
Sbjct: 324 AELERGLKEAEEAGPVPPEWMFEDVFA---EKPWHLLRQEALLKEEL 367
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.090
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHT 393
Q EK + C C K F+ YL +H R+HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.1 bits (59), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 527 HELRQTFVCEYCNKEFTFLQYLKRHMRTHT 556
+ + F C C K F+ +YL +H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 32.2 bits (72), Expect = 0.10
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 301 EHGENQAKRKEKKICDICSA----EVVHLAIHKKHSHSGQ-YHVCPHCGKKFTRKAELQL 355
E + + + +C C+ +V L H + Q C HC K+F KA L
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72
Query: 356 HIKGIH 361
H H
Sbjct: 73 HTMAEH 78
Score = 31.8 bits (71), Expect = 0.15
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKP 560
CP C RKT L K + + +L+ C++C K+F L H + KP
Sbjct: 25 AVCPTC-NVVTRKT-LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 26.4 bits (57), Expect = 9.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 339 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
VCP C TRK + L K + + +L+ C++C K+F L H + KP
Sbjct: 26 VCPTC-NVVTRKTLVGL-KKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 33.3 bits (75), Expect = 0.14
Identities = 18/117 (15%), Positives = 29/117 (24%), Gaps = 6/117 (5%)
Query: 278 SSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHS-GQ 336
S++ G R ++ K +KKIC+IC + + G+
Sbjct: 42 SAMVLFIGLNELKRVDFSELEAIDI-YRTGKGYDKKICNICHILKNTDGFEINQTDAKGR 100
Query: 337 YHVCPHC----GKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM 389
P C K K + + C C K
Sbjct: 101 KTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVH 157
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 29.7 bits (66), Expect = 0.16
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 499 FFLQCPHCPKTFPRKTELSNHIK 521
+ CP CPK F R LS HIK
Sbjct: 1 YAFACPACPKRFMRSDALSKHIK 23
Score = 27.4 bits (60), Expect = 1.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 340 CPHCGKKFTRKAELQLHIK 358
CP C K+F R L HIK
Sbjct: 5 CPACPKRFMRSDALSKHIK 23
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer
membrane, electron trans; HET: HEC; 3.20A {Shewanella
oneidensis}
Length = 669
Score = 34.1 bits (76), Expect = 0.16
Identities = 24/159 (15%), Positives = 39/159 (24%), Gaps = 11/159 (6%)
Query: 315 CDICSAEVVHLAIHKKHSHSGQYHVCPHC---GKKFTRKAELQLHIKGIHLKHQLEKTYI 371
C+ C H + Q C C K I HL +
Sbjct: 194 CNSC-----HSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISN 248
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEKPYKC---KDCGAAFNHNVSLKNHKNSSCPKLYSYE 428
C+ CH + + RV T E C + A H N +C
Sbjct: 249 CQTCHADNPDLADRQNWYRVPTMEACGACHTQINFPAGQGHPAQTDNSNCVACHNADWTA 308
Query: 429 TYLKHLKTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDH 467
+ + + + T+A + +
Sbjct: 309 NVHSNAAQTSALAQFNASISSASMDANGTITVAVSLTNP 347
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.3 bits (65), Expect = 0.24
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTN 394
++ ++C C FT RH++VHT+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 25.5 bits (55), Expect = 6.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 527 HELRQTFVCEYCNKEFTFLQYLKRHMRTHTN 557
++ FVC C FT RH++ HT+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 25.5 bits (55), Expect = 6.9
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 392 HTNEKPYKCKDCGAAFNHNVSLKNH 416
+ ++P+ C+ C +AF + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH 26
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 30.6 bits (68), Expect = 0.33
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 301 EHGENQAKRKEKKICDICSA----EVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLH 356
E + K C C A + L H ++ + C HCGK+ A ++ H
Sbjct: 23 EQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFT-CHHCGKQLRSLAGMKYH 81
Query: 357 IKGIH 361
+ H
Sbjct: 82 VMANH 86
Score = 29.5 bits (65), Expect = 0.83
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 501 LQCPHCPKTFPRKTELSNHIKGI--HMKHELRQTFVCEYCNKEFTFLQYLKRHMRTHTNE 558
+ CP C + RKT I+G+ HM++ ++ F C +C K+ L +K H+ + N
Sbjct: 35 VSCPTC-QAVGRKT-----IEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
Query: 559 KP 560
P
Sbjct: 89 LP 90
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr;
TERT family, transcriptional repressor, DNA-binding;
HET: RF1; 1.85A {Mycobacterium tuberculosis}
Length = 255
Score = 32.2 bits (73), Expect = 0.35
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 108 SSGSDTPKKRRGRSRSKGRDAPVSRKRNRRAKTPSQEETDAKILQ 152
+ RG + + S R RR PS ++ + IL
Sbjct: 6 HHHHSSGLVPRGSHMTTSAASQASLPRGRRTARPSGDDRELAILA 50
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 32.6 bits (75), Expect = 0.38
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 47/171 (27%)
Query: 73 TRQTSFKTIISKYVGYNIDDLNTID-----------KRAKRTARAA-------------- 107
+QT KT+ K V I + +D K A+ A
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 269
Query: 108 --SSGSDTPKKRRGR---SRSKGRDAPVSRKRN--RRAKTPSQEETDAKILQQQKNLEKK 160
+ D P + R + + +D P+ R R S+EE + + ++
Sbjct: 270 PHTMSGDDPTRYRSKELENEWAKKD-PLVRFRKFLEAKGLWSEEEENN--------VIEQ 320
Query: 161 IKKMAKEERRRKIDLDK-KPSDM-DNVFASLDEMSSEEEEEEDWDEIHLGQ 209
K+ KE ++ + K K +D+ +F E+ +E+ + + +
Sbjct: 321 AKEEIKEAIKKADETPKQKVTDLISIMFE---ELPFNLKEQYEIYKEKESK 368
>3q0w_A HTH-type transcriptional regulator EThr; TETR family,
transcriptional repressor, transcription-transc
inhibitor complex; HET: LL5; 1.60A {Mycobacterium
tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A*
3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A
3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Length = 236
Score = 31.4 bits (71), Expect = 0.61
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 100 AKRTARAASSGSDTPKKRRGRSRSKGRDAPVSRKRNRRAKTPSQEETDAKILQ 152
S P RG + + S R RR PS ++ + IL
Sbjct: 2 GSSHHHHHHSSGLVP---RGSHMTTSAASQASLPRGRRTARPSGDDRELAILA 51
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.63
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 4/48 (8%)
Query: 297 HVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCG 344
+ G C C + + G VC CG
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECKVYPPKIV---ERFSEGDV-VCALCG 49
Score = 28.1 bits (62), Expect = 7.2
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 4/42 (9%)
Query: 465 QDHIQPRMKQKQICEICCAEVYHINGHIKDKHSGFFLQCPHC 506
P + C C I ++ G + C C
Sbjct: 11 AGRRGPNLNIVLTCPECKVYPPKI---VERFSEG-DVVCALC 48
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.6 bits (63), Expect = 0.65
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 393 TNEKPYKCKDCGAAFNHNVSLKNHK 417
+ EK ++C++CG F VSL H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQ 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 27.6 bits (61), Expect = 0.81
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEK 559
F C C K F +L H+ H N+K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 24.9 bits (54), Expect = 8.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 339 VCPHCGKKFTRKAELQLHIK 358
CP C K+F R L LHI
Sbjct: 4 ACPECPKRFMRSDHLTLHIL 23
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 31.6 bits (69), Expect = 0.93
Identities = 13/128 (10%), Positives = 30/128 (23%), Gaps = 1/128 (0%)
Query: 295 KNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHV-CPHCGKKFTRKAEL 353
+ K + C C + + + + G F A
Sbjct: 367 STDDKGPVDAASFKHHKGLACASCHMSGFNPVDNSEWLTPPEGQKDRGFVGNYFHYYATP 426
Query: 354 QLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSL 413
++ + + C CH E + H+ K + + N +
Sbjct: 427 EIDGIPGVNLVHVFQNGGCASCHAEQGEEGSAKYHLAKANATKLLRTEYAYKLENGTFDV 486
Query: 414 KNHKNSSC 421
+ +
Sbjct: 487 AKGELTFT 494
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 28.8 bits (64), Expect = 0.95
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 372 CEYCHKEFTFYNYLRRHMRVHTNEKPYKC-KDCGAAFNHNVSLKNHKNSSCPK 423
C YC KEF F + ++ H P C CG L H SC
Sbjct: 13 CTYCTKEFVF-DTIQSHQY-QCPRLPVACPNQCGVGTVAREDLPGHLKDSCNT 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.96
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 9/29 (31%)
Query: 152 QQQKNLEKKIKKMAKEERRRKIDLDKKPS 180
Q K L+ +K A D P+
Sbjct: 20 QALKKLQASLKLYAD---------DSAPA 39
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 31.0 bits (71), Expect = 1.1
Identities = 8/51 (15%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 150 ILQQQKNLEKKIKKMAKEERRRKIDLDKKPSDMDNVFASLDEMSSEEEEEE 200
+L+ ++++ +KI+ + + +R ++ P + +F L + ++ E
Sbjct: 206 LLEPEESIWQKIQHLPDDPQRIRLSDPGDP-ERTILFTYLSYFAPKDLVEA 255
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 30.6 bits (70), Expect = 1.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 337 YHVCPHCGKK 346
Y VCP+CG K
Sbjct: 193 YFVCPNCGHK 202
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 27.2 bits (60), Expect = 1.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 533 FVCEYCNKEFTFLQYLKRHMRTHTNEKPYK 562
F C C K F +L +H+ H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 28.7 bits (63), Expect = 1.7
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 297 HVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVC---PHCGKKFTRKAEL 353
HV ++K K+C CS V + + G +C C + + + +L
Sbjct: 22 HVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR----GSLFMCSIVQGCKRTYLSQRDL 77
Query: 354 QLHIKGIHLK 363
Q HI H++
Sbjct: 78 QAHINHRHMR 87
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 30.0 bits (65), Expect = 2.4
Identities = 24/207 (11%), Positives = 49/207 (23%), Gaps = 12/207 (5%)
Query: 361 HLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSS 420
H H + C CH +R+ + EK C C + +
Sbjct: 20 HDIHLKKYNNNCRICHIALFDLRKPKRY-TMLDMEKGKSCGACHTGMKAFSVADDSQCVR 78
Query: 421 C----PKLYSYETYLKHLKTNHHGYEVSNLCYICGFFSAKRSTLAHHIQDHIQPRMKQKQ 476
C + +Y H V L C + + ++ +M++ +
Sbjct: 79 CHSGSARPVAYRMKGAGEAVFSHEVHVPMLEGKCR--TCHSNREITGGRNVTMAQMEKGK 136
Query: 477 ICEICCAEVYHINGHIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCE 536
C C H + ++ + C
Sbjct: 137 SCGAC-----HNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCN 191
Query: 537 YCNKEFTFLQYLKRHMRTHTNEKPYKC 563
C+ + + + +K C
Sbjct: 192 ECHTKLFAYKAGAKRFTMADMDKGKSC 218
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane
protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Length = 186
Score = 29.2 bits (65), Expect = 2.4
Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 127 DAPVSRKRNRRAKTPSQEETDAKILQQ------QKNLE---KKIKKMAKEERRRKIDLDK 177
D R ++E +K+L + ++L K IK+M +E+++R + K
Sbjct: 14 DTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISK 73
Query: 178 KPSDMDNVFAS-------LDEMSSEEEEEEDWDEI 205
+ + ++ V + + S +++
Sbjct: 74 RVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDL 108
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.2 bits (67), Expect = 2.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 245 SPYEFKCRVCDWKLNSYDKLLRHIKSDHGGYETSSL 280
+P + C VC+ + ++ L H++SDH ++ L
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLL 148
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 26.3 bits (57), Expect = 2.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 368 KTYICEYCHKEFTFYNYLRRHMRVHT 393
+ Y C C K F+ + + H RVHT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 29.5 bits (66), Expect = 2.8
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
+ YI ++ + F R+ + T P
Sbjct: 31 TDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHP 64
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 29.6 bits (67), Expect = 2.8
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 170 RRKIDLDKKPSDMDNVFASLDEMSSEEEEEEDWDEIHLGQFSP 212
R L +++ ++L + + D+ + +LG +P
Sbjct: 165 GRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSIAP 207
>2e72_A POGO transposable element with ZNF domain; zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 49
Score = 26.7 bits (58), Expect = 3.6
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 394 NEKPYKCKDCGAAFNHNVSLKNHKNSSCPKLYSYET 429
+ C C A F +L+ H CP++ Y++
Sbjct: 9 DGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQS 44
>3hh0_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, 11183J, structural
genomics; 2.67A {Bacillus cereus atcc 14579}
Length = 146
Score = 28.5 bits (64), Expect = 3.7
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 142 SQEETDAKILQQQKNLEKKIKKMAKEER--RRKIDLDKKPSDMD-NVFASLDEMSSEEEE 198
E ++ Q++ L + +++AK +K ++ +F+S + E+E
Sbjct: 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIWEKE 136
Query: 199 EEDWDEIH 206
++ H
Sbjct: 137 NKEGHHHH 144
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 29.2 bits (66), Expect = 3.7
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 523 IHMKH-ELRQTFVCEYCNKEFTFLQYLKRHMRTHTNEKPYKCVCG 566
I + H + VC CNK + + + ++ P +C CG
Sbjct: 146 ISL-HGNVF-EAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECPCG 188
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 28.0 bits (62), Expect = 3.7
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 235 DWDEVHLGQFSPYEFKCRVCDWKLNSYDKLLRHIKSDHG 273
+ H C CD S ++ H K +H
Sbjct: 6 SGEPAH----GRQHTPCLFCDRLFASAEETFSHCKLEHQ 40
Score = 27.2 bits (60), Expect = 7.0
Identities = 6/40 (15%), Positives = 8/40 (20%), Gaps = 7/40 (17%)
Query: 195 EEEEEEDWDEIHLGQFSPYEFKCRVCDWKLNSYDKLLRHM 234
E C CD S ++ H
Sbjct: 3 SGSSGEPAHG-------RQHTPCLFCDRLFASAEETFSHC 35
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR
{Crimean-congo hemorrhagic fever virus}
Length = 77
Score = 27.0 bits (59), Expect = 3.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 308 KRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFT 348
+ + + C IC V+ + H + Y++CP+C + T
Sbjct: 1 RELKPQTCTICETTPVNAIDAEMHDLNCSYNICPYCASRLT 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl
acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A
{Arabidopsis thaliana}
Length = 581
Score = 29.6 bits (65), Expect = 3.9
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 153 QQKNLEKKIKKMAKEERRRKIDLDKKPSDMDNVFASLDEMSSEEEEEEDWDEIHLGQFSP 212
Q++ L++ + K + L+ +D + F S+ + ++ E E + G SP
Sbjct: 34 QKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRMVDGDTSP 93
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.6 bits (56), Expect = 4.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 249 FKCRVCDWKLNSYDKLLRHIKSDHGG 274
+ C +C+ D L+RH + H G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.8 bits (54), Expect = 9.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 339 VCPHCGKKFTRKAELQLHIKGIH 361
C C + FTR+ L H + IH
Sbjct: 4 ACGLCNRAFTRRDLLIRHAQKIH 26
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 29.3 bits (66), Expect = 4.5
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 150 ILQQQKNLEKKIKKMAKEERRRKIDLDKKPSDMDNVFASLDEMSSEEEEEEDWDEIHLGQ 209
++ K+ A+ KI+ K + FA ++S+E + +
Sbjct: 247 LVDDPKDKTFTPFGDARH----KIEGGKVVKSREIYFAIYQSIASDERRPGLYK-----E 297
Query: 210 FSPYEFKCRVCD-------WKLNSYDKLLRHMDWDEVHLG 242
F F + D +++ ++L + + +G
Sbjct: 298 FPQDFFDLIIIDECHRGSARDNSNWREILEYFE-PAFQIG 336
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 28.8 bits (64), Expect = 4.9
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 397
L Y+CE+C K L+RH+ P
Sbjct: 29 TTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLRHP 62
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 28.9 bits (64), Expect = 5.5
Identities = 8/93 (8%), Positives = 23/93 (24%), Gaps = 9/93 (9%)
Query: 68 EEDDNTRQTSFKTIISKYVGYNIDDLNTIDKRAKRTARAASSGSDTPKKRRGRSRSKGRD 127
+ + Q F +D + + + R + KK
Sbjct: 218 GQSNEAFQKQFSKWSKTLEAAKVDSVEKLFTKVHAEIRKNPERVKSTKKN--------DK 269
Query: 128 APVSRKRNRRAKTPSQEETDAKILQQQKNLEKK 160
K+ K + + ++ + + +
Sbjct: 270 PKRDHKKFYPTKL-TAAQRKDRVKTKFQLALSQ 301
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.6 bits (55), Expect = 5.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 338 HVCPHCGKKFTRKAELQLHIKGIHLKHQ 365
+VC C KKF L+ HI+ +H Q
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.1 bits (62), Expect = 5.9
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 491 HIKDKHSGFFLQCPHCPKTFPRKTELSNHIKGIHMKHELRQTFVCEYCNKEFTFLQYLKR 550
+ + CP C + F + ++ HI K R+ C+ C F +
Sbjct: 101 DHQAHCEFALMDCPQCQRPFQKF-HINIHIL----KDCPRRQVSCDNCAASMAFED-KEI 154
Query: 551 HMRT 554
H +
Sbjct: 155 HDQN 158
Score = 27.4 bits (60), Expect = 9.6
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 8/69 (11%)
Query: 310 KEKKICDICSAEV--VHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLE 367
C C H+ IH + C +C + + H ++
Sbjct: 108 FALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEI------HDQNCPL 161
Query: 368 KTYICEYCH 376
+ H
Sbjct: 162 ALEHHHHHH 170
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 25.6 bits (55), Expect = 5.9
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 392 HTNEKPYKCKDCGAAFNHNVSLKNHKNS 419
+ EKPY C CG F + H S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRS 32
Score = 25.6 bits (55), Expect = 6.0
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 364 HQLEKTYICEYCHKEFTFYNYLRRHMRVH 392
EK Y C C F + + H+R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 25.3 bits (54), Expect = 8.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 249 FKCRVCDWKLNSYDKLLRHIKSDHGGYETS 278
+ C VC + D++ H++S G S
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized,
gamma EAR-; clathrin-adaptor, GAT domain, helical
paper-CLIP, three-helix bundle; 2.80A {Homo sapiens}
SCOP: a.7.8.1
Length = 158
Score = 28.0 bits (62), Expect = 6.1
Identities = 8/52 (15%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 161 IKKMAKEERRRKIDLDKKPSDMDNVFAS-------LDEMSSEEEEEEDWDEI 205
IK+M +E+++R + K+ + ++ V + + S +++
Sbjct: 41 IKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDL 92
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 28.7 bits (65), Expect = 6.2
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 155 KNLEKKIKKMAKEERRRKIDLDKKPSDMDNVFASLDEMSSEEEEEED 201
K LE+ I +M + R + D + V+ EEE +
Sbjct: 221 KELEQTILRMMTDPARVRRS-DPGNPENCPVWKYHQAFDISEEESKW 266
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K,
structural genomi protein structure initiative; 2.35A
{Lactobacillus reuteri}
Length = 221
Score = 28.1 bits (63), Expect = 6.5
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 142 SQEETDAKILQQQKNLEKKIKKMAKEERRRKID--LDKKPSDMDNVFASLDEMSSEEEEE 199
+ E + L ++ + + R +K+ L K DE+ + + E
Sbjct: 154 TPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEVVPQPDLE 213
Query: 200 EDWDEIH 206
E H
Sbjct: 214 EGHHHHH 220
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 28.8 bits (63), Expect = 7.2
Identities = 15/144 (10%), Positives = 34/144 (23%)
Query: 141 PSQEETDAKILQQQKNLEKKIKKMAKEERRRKIDLDKKPSDMDNVFASLDEMSSEEEEEE 200
PS ++ +IL + K + R++ + ++ A+
Sbjct: 453 PSPQDLMGRILVKNKKRHRPSAGGPDSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSS 512
Query: 201 DWDEIHLGQFSPYEFKCRVCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWKLNS 260
D K + K + L R + + +
Sbjct: 513 DSCPGLSNGEEVGLEKPSLEPQKSLGDEGLNRGPYVLGPADREDEEEDEEEEEQTDPKKP 572
Query: 261 YDKLLRHIKSDHGGYETSSLCYHC 284
+ E S+L +
Sbjct: 573 TTDEGTASSEVNATEEMSTLVNYI 596
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 27.9 bits (63), Expect = 7.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 13/42 (30%)
Query: 311 EKKICDICSAE--------VVH-----LAIHKKHSHSGQYHV 339
+ + CD+C+ VV +A+ + + G YHV
Sbjct: 65 DAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHV 106
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 28.4 bits (64), Expect = 7.5
Identities = 6/34 (17%), Positives = 18/34 (52%), Gaps = 11/34 (32%)
Query: 160 KIKKMAKEERRRKID-----------LDKKPSDM 182
K++K+ ++E +++ L++KP ++
Sbjct: 107 KLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.1 bits (62), Expect = 7.7
Identities = 8/123 (6%), Positives = 22/123 (17%), Gaps = 19/123 (15%)
Query: 95 TIDKRAKRTARAASS--GSDTPKKRRGRSRSKG-----RDAPVSRKRNR---------RA 138
++ A + + K P ++
Sbjct: 24 FVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEK 83
Query: 139 KTPSQEETDAKILQQQKNLEKKIKKMAKEERRRKIDLDKKPSDMDNVFASLDEMSSEEEE 198
K + + + +++ K R R + D +
Sbjct: 84 KFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILED---LVFPTEIVGKRV 140
Query: 199 EED 201
Sbjct: 141 RYL 143
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 28.7 bits (64), Expect = 7.7
Identities = 32/158 (20%), Positives = 46/158 (29%), Gaps = 26/158 (16%)
Query: 203 DEIHLGQFSPYEFK--CRVCDWKLNSYDKLLR-----HMDWDEVHLGQFSPYEFKCRVCD 255
I G SP E + + YD+ MD LG P + KC C
Sbjct: 7 KGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDP---RLGVIEPGQ-KCPTCG 62
Query: 256 WKLNSYDKLLRHIKSDHGGY-ETSSLCYHCGYYSKNRSTLKN------HVRVEHGENQAK 308
L + H G+ E H G+ LK V++ E +
Sbjct: 63 NTLGN--------CPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKY 114
Query: 309 RKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKK 346
+ + + VCPHCG+K
Sbjct: 115 SRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEK 152
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein
complex, A-minor motif, 3-helix junction, signaling
protein/RNA complex; HET: CCC; 3.10A {Homo sapiens}
SCOP: a.36.1.1
Length = 129
Score = 27.2 bits (61), Expect = 8.3
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 113 TPKKRRGRSRSKGRDAPVSRKRNRRAK---TPSQEETDAKILQQQKNLEKKIKKMAK 166
++ +K R + R A+ +++ ++L Q + +KKM
Sbjct: 71 NDQELDSTDGAKVFSKQPGRIQ-RVARGSGVSTRDVQ--ELLTQYTKFAQMVKKMGG 124
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.8 bits (56), Expect = 8.9
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 214 EFKCR--VCDWKLNSYDKLLRHMDWDEVHLGQFSPYEFKCRVCDWK-----LNSYDKLLR 266
+ KC+ C +S L RH+ + H+ Q + + C+W+ + ++
Sbjct: 1 DLKCKWKECPESASSLFDLQRHLL--KDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVN 58
Query: 267 HIKSDH 272
HI + H
Sbjct: 59 HINAQH 64
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 24.7 bits (53), Expect = 8.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 534 VCEYCNKEFTFLQYLKRHMRTHTNEK 559
C C K FT L H+R HT EK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.5 bits (63), Expect = 9.1
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 23/108 (21%)
Query: 272 HGGY-ETSSLCYHCGYYSKNRSTLK---------------NHVRVEHGENQAKRKEKKIC 315
H G+ + + +H G+ +K + + +R +K++ I
Sbjct: 80 HFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIW 139
Query: 316 DICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLK 363
+C ++V Q CG Q I+ LK
Sbjct: 140 TLCKTKMVCETDVPSEDDPTQLVSRGGCGNT-------QPTIRKDGLK 180
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.1 bits (57), Expect = 10.0
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 325 LAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNY 384
+ H++ + VC HC EL + H + +T +C C +
Sbjct: 5 SSGHEETECPLRLAVCQHCDL------ELSILKLKEHEDYCGARTELCGNCGRNV----- 53
Query: 385 LRRHMRVH 392
L + ++ H
Sbjct: 54 LVKDLKTH 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.412
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,130,390
Number of extensions: 539186
Number of successful extensions: 3487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3051
Number of HSP's successfully gapped: 1002
Length of query: 606
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 507
Effective length of database: 3,937,614
Effective search space: 1996370298
Effective search space used: 1996370298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.6 bits)