Query psy15166
Match_columns 90
No_of_seqs 109 out of 134
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 22:16:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkz_B Light-harvesting protei 44.7 12 0.00043 21.3 1.8 12 70-81 1-12 (41)
2 1lgh_B LH II, B800/850, light 44.0 13 0.00044 21.6 1.9 12 70-81 6-17 (45)
3 2eel_A Cell death activator CI 35.0 3.8 0.00013 26.9 -1.6 23 29-51 62-84 (91)
4 1d4b_A CIDE B, human cell deat 34.9 7 0.00024 27.0 -0.3 23 29-51 87-109 (122)
5 3bqs_A Uncharacterized protein 32.1 29 0.00099 22.2 2.3 21 68-88 66-86 (93)
6 1dx7_A Light-harvesting protei 29.4 12 0.0004 22.1 0.0 19 63-81 2-20 (48)
7 2p7v_A Regulator of sigma D; R 27.8 14 0.00048 26.4 0.2 12 76-87 50-61 (158)
8 1vk5_A Expressed protein; stru 26.5 63 0.0022 23.1 3.5 46 13-62 33-83 (157)
9 4e17_B Catenin alpha-1; four h 25.9 26 0.00088 20.0 1.1 14 21-34 25-38 (40)
10 1ibx_B Chimera of IGG binding 25.6 12 0.00041 26.6 -0.5 23 29-51 118-140 (145)
11 3gyd_A CNMP-BD protein, cyclic 24.9 33 0.0011 22.3 1.7 50 28-84 13-62 (187)
12 3mab_A Uncharacterized protein 24.2 42 0.0014 21.5 2.0 19 68-86 66-84 (93)
13 1x2m_A LAG1 longevity assuranc 23.1 63 0.0022 19.3 2.6 35 13-59 1-38 (64)
14 1z5z_A Helicase of the SNF2/RA 22.1 24 0.00081 25.5 0.5 37 44-81 10-46 (271)
15 2kr1_A Ubiquitin protein ligas 21.0 28 0.00094 22.4 0.6 20 19-38 19-38 (82)
16 1je8_A Nitrate/nitrite respons 20.4 53 0.0018 19.3 1.8 24 63-86 12-36 (82)
17 3ky7_A TRNA (guanine-N(1)-)-me 20.0 49 0.0017 25.5 1.9 41 48-88 227-267 (269)
No 1
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=44.69 E-value=12 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=10.3
Q ss_pred cCCCHHHHHHHH
Q psy15166 70 HNLTADEIKCEK 81 (90)
Q Consensus 70 ~~LseeE~kel~ 81 (90)
.+||++|.+|+.
T Consensus 1 ~gLT~~EA~EfH 12 (41)
T 1nkz_B 1 ATLTAEQSEELH 12 (41)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 379999999985
No 2
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=43.98 E-value=13 Score=21.63 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=10.5
Q ss_pred cCCCHHHHHHHH
Q psy15166 70 HNLTADEIKCEK 81 (90)
Q Consensus 70 ~~LseeE~kel~ 81 (90)
++||++|.+|+.
T Consensus 6 tGLT~~EA~EfH 17 (45)
T 1lgh_B 6 SGLTEEEAIAVH 17 (45)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 589999999985
No 3
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.03 E-value=3.8 Score=26.89 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHHhcCCCCCCCCCCChhHHHH
Q psy15166 29 AEYMQQLPAGKLPISGSDGALYR 51 (90)
Q Consensus 29 ~~Ym~~LP~~kvP~~gS~Ge~~R 51 (90)
++||.+||.+-+=++=..|++|.
T Consensus 62 EeyF~tLp~nT~lmvL~~ge~W~ 84 (91)
T 2eel_A 62 EEFFQTLGDNTHFMILEKGQKWM 84 (91)
T ss_dssp HHHHTTSCSSEEEEEEETTCCCC
T ss_pred hhhhhhCCCCCEEEEEcCCCccC
Confidence 68999999988877777777764
No 4
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=34.93 E-value=7 Score=26.96 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHhcCCCCCCCCCCChhHHHH
Q psy15166 29 AEYMQQLPAGKLPISGSDGALYR 51 (90)
Q Consensus 29 ~~Ym~~LP~~kvP~~gS~Ge~~R 51 (90)
++||.+||.+-+=++=..|++|.
T Consensus 87 EeYF~tLp~nT~lmvL~~gq~W~ 109 (122)
T 1d4b_A 87 EDFFQLLEDDTCLMVLQSGQSWS 109 (122)
T ss_dssp THHHHHSSSCCCCCEECSSCCCC
T ss_pred hhHhhcCCCCCEEEEecCCCccc
Confidence 68999999999988888888886
No 5
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=32.10 E-value=29 Score=22.20 Aligned_cols=21 Identities=24% Similarity=0.059 Sum_probs=17.5
Q ss_pred hhcCCCHHHHHHHHHhhhhhc
Q psy15166 68 LCHNLTADEIKCEKMECQHME 88 (90)
Q Consensus 68 yC~~LseeE~kel~~~~~~~~ 88 (90)
....|++++|++|+.|++-.|
T Consensus 66 ~w~~l~~~~K~~L~~~~~~~~ 86 (93)
T 3bqs_A 66 RWHGLDEAKKIELKKFHQSLE 86 (93)
T ss_dssp CGGGSCHHHHHHHHHHHHHHC
T ss_pred CHHHCCHHHHHHHHHHHHHhh
Confidence 456899999999999987654
No 6
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=29.37 E-value=12 Score=22.06 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=14.0
Q ss_pred CCChhhhcCCCHHHHHHHH
Q psy15166 63 DLNANLCHNLTADEIKCEK 81 (90)
Q Consensus 63 D~d~~yC~~LseeE~kel~ 81 (90)
|-+-..=++||++|.+|+.
T Consensus 2 d~~~~s~tGLT~~EA~EfH 20 (48)
T 1dx7_A 2 DKSDLGYTGLTDEQAQELH 20 (48)
T ss_dssp CCGGGGHHHHHHHHHHHHT
T ss_pred CccCCCCCCCCHHHHHHHH
Confidence 3444555789999999984
No 7
>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli}
Probab=27.82 E-value=14 Score=26.37 Aligned_cols=12 Identities=25% Similarity=0.265 Sum_probs=9.5
Q ss_pred HHHHHHHhhhhh
Q psy15166 76 EIKCEKMECQHM 87 (90)
Q Consensus 76 E~kel~~~~~~~ 87 (90)
..++|+-||||.
T Consensus 50 ~~~~l~~FCq~L 61 (158)
T 2p7v_A 50 NEKALDDFCQSL 61 (158)
T ss_dssp CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 457899999974
No 8
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=26.53 E-value=63 Score=23.06 Aligned_cols=46 Identities=35% Similarity=0.587 Sum_probs=30.3
Q ss_pred CCCccchhhhhcHHHHHHHHhcCCC-----CCCCCCCChhHHHHHHHHHHhcCCC
Q psy15166 13 GSDGALYRRQQLEKQAAEYMQQLPA-----GKLPISGSDGALYRRQQLEKQVPLH 62 (90)
Q Consensus 13 gSD~~l~~kqQl~e~v~~Ym~~LP~-----~kvP~~gS~Ge~~R~kQL~~QLP~h 62 (90)
.+++++-|| .|.-.+||+.+|- .-+|...=.|=....|||-.| |.|
T Consensus 33 ~~e~~liRr---AEmYQ~YMK~iPIP~~~~s~Ipf~sW~gL~~SiKQlY~Q-PLH 83 (157)
T 1vk5_A 33 ADEGSLLRR---AEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQ-PLH 83 (157)
T ss_dssp ---CTTHHH---HHHHHHHHHTSCCCSSCCSCCCCSSHHHHHHHHHHHHCC-CCC
T ss_pred CcchhhhhH---HHHHHHHHHhCCCCcccCCcccchhHHHHHHHHHHHhcC-cHH
Confidence 456677777 6788999999874 357775556666667776544 555
No 9
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=25.88 E-value=26 Score=19.97 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=11.3
Q ss_pred hhhcHHHHHHHHhc
Q psy15166 21 RQQLEKQAAEYMQQ 34 (90)
Q Consensus 21 kqQl~e~v~~Ym~~ 34 (90)
||-|++++.+||..
T Consensus 25 rqALQdLlseY~~~ 38 (40)
T 4e17_B 25 RQALQDLLSEYMGN 38 (40)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcc
Confidence 47889999999964
No 10
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=25.63 E-value=12 Score=26.57 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHhcCCCCCCCCCCChhHHHH
Q psy15166 29 AEYMQQLPAGKLPISGSDGALYR 51 (90)
Q Consensus 29 ~~Ym~~LP~~kvP~~gS~Ge~~R 51 (90)
++||.+||.+-+=++=..|++|.
T Consensus 118 EeYF~tLp~nT~LmvL~~gekW~ 140 (145)
T 1ibx_B 118 DDYFLCLPSNTKFVALASNEKWA 140 (145)
T ss_dssp HHHHHHSCSSCBEEEECSSCCCC
T ss_pred hhHhhcCCCCCEEEEECCCCccC
Confidence 68999999888877777777764
No 11
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=24.90 E-value=33 Score=22.35 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCCCCCCCChhHHHHHHHHHHhcCCCCCChhhhcCCCHHHHHHHHHhh
Q psy15166 28 AAEYMQQLPAGKLPISGSDGALYRRQQLEKQVPLHDLNANLCHNLTADEIKCEKMEC 84 (90)
Q Consensus 28 v~~Ym~~LP~~kvP~~gS~Ge~~R~kQL~~QLP~hD~d~~yC~~LseeE~kel~~~~ 84 (90)
...||.-++++-+....++........++.++|.- .+|++++...+...+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f-------~~l~~~~l~~l~~~~ 62 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLF-------GDFSNEEVRYLCSYM 62 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSS-------CCCCHHHHHHHHTTC
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhh-------hcCCHHHHHHHHHhc
Confidence 35799999999999999999988889999988764 578999888875443
No 12
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=24.22 E-value=42 Score=21.51 Aligned_cols=19 Identities=21% Similarity=-0.047 Sum_probs=15.9
Q ss_pred hhcCCCHHHHHHHHHhhhh
Q psy15166 68 LCHNLTADEIKCEKMECQH 86 (90)
Q Consensus 68 yC~~LseeE~kel~~~~~~ 86 (90)
....|++++|.+|+.|-+-
T Consensus 66 ~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3mab_A 66 RWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp CGGGSCHHHHHHHHHHHHH
T ss_pred cHHHCCHHHHHHHHHHHHH
Confidence 4678999999999998653
No 13
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=23.06 E-value=63 Score=19.26 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=22.4
Q ss_pred CCCccchhhhhcHHHHHHHH-h-c-CCCCCCCCCCChhHHHHHHHHHHhc
Q psy15166 13 GSDGALYRRQQLEKQAAEYM-Q-Q-LPAGKLPISGSDGALYRRQQLEKQV 59 (90)
Q Consensus 13 gSD~~l~~kqQl~e~v~~Ym-~-~-LP~~kvP~~gS~Ge~~R~kQL~~QL 59 (90)
|+++.-++..++.+ .+.+| . + .|. ..++..|..+|
T Consensus 1 ~~~~~~~~~~~~~~-LE~~F~~~~~yp~-----------~~~r~~LA~~l 38 (64)
T 1x2m_A 1 GSSGSSGTAQPNAI-LEKVFTAITKHPD-----------EKRLEGLSKQL 38 (64)
T ss_dssp CCCSSCCSSCHHHH-HHHHHHTTCSSCC-----------HHHHHHHHHHH
T ss_pred CCCCCCCCchHHHH-HHHHHHHcCCCcC-----------HHHHHHHHHHh
Confidence 66777788888887 55555 2 2 333 23567777777
No 14
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=22.09 E-value=24 Score=25.46 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=13.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCChhhhcCCCHHHHHHHH
Q psy15166 44 GSDGALYRRQQLEKQVPLHDLNANLCHNLTADEIKCEK 81 (90)
Q Consensus 44 gS~Ge~~R~kQL~~QLP~hD~d~~yC~~LseeE~kel~ 81 (90)
.|.|-+..+++....||+...-+-+|. ||+++++.-+
T Consensus 10 ~~~~~rr~k~~v~~~LP~k~e~~v~v~-ls~~Q~~~Y~ 46 (271)
T 1z5z_A 10 HSSGLVPRGSHMASDLPDKIETNVYCN-LTPEQAAMYK 46 (271)
T ss_dssp ------------------CEEEEEEEC-CCHHHHHHHH
T ss_pred ccccccccHHHHHhhCCCCEEEEEEeC-CCHHHHHHHH
Confidence 466778888888889998877777774 7877766544
No 15
>2kr1_A Ubiquitin protein ligase E3A; UBL conjugation pathway, structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Homo sapiens}
Probab=21.03 E-value=28 Score=22.43 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=15.4
Q ss_pred hhhhhcHHHHHHHHhcCCCC
Q psy15166 19 YRRQQLEKQAAEYMQQLPAG 38 (90)
Q Consensus 19 ~~kqQl~e~v~~Ym~~LP~~ 38 (90)
.||.....+|++||.+|=+.
T Consensus 19 ~kr~~~k~lIerYf~QLt~G 38 (82)
T 2kr1_A 19 MKRAAAKHLIERYYHQLTEG 38 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56777788999999886543
No 16
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.38 E-value=53 Score=19.32 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=14.3
Q ss_pred CCChhhhc-CCCHHHHHHHHHhhhh
Q psy15166 63 DLNANLCH-NLTADEIKCEKMECQH 86 (90)
Q Consensus 63 D~d~~yC~-~LseeE~kel~~~~~~ 86 (90)
|.....|- .||+.|++.+.++++-
T Consensus 12 ~~~~~~~~~~Lt~~e~~vl~l~~~g 36 (82)
T 1je8_A 12 SATTERDVNQLTPRERDILKLIAQG 36 (82)
T ss_dssp -----CCGGGSCHHHHHHHHHHTTT
T ss_pred chHHHHHHccCCHHHHHHHHHHHcC
Confidence 44555453 7899999998887654
No 17
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0
Probab=20.01 E-value=49 Score=25.52 Aligned_cols=41 Identities=10% Similarity=-0.103 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCCCCChhhhcCCCHHHHHHHHHhhhhhc
Q psy15166 48 ALYRRQQLEKQVPLHDLNANLCHNLTADEIKCEKMECQHME 88 (90)
Q Consensus 48 e~~R~kQL~~QLP~hD~d~~yC~~LseeE~kel~~~~~~~~ 88 (90)
++||++|-+.-.=...-|.-.-..|+++|++.|+-+.+.||
T Consensus 227 ~~WR~~qsl~rT~~rRPDLl~~~~l~~~~~~~L~~~~~~~~ 267 (269)
T 3ky7_A 227 DAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLK 267 (269)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHTSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhChhhHhhccCCHHHHHHHHHHHHHhh
Confidence 78888876644322222222233799999999998888876
Done!