RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15166
         (90 letters)



>d2z8la2 d.15.6.1 (A:101-204) Superantigen-like protein SET3
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 104

 Score = 24.4 bits (53), Expect = 1.4
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 21 RQQLEKQAAEYMQQLPAGKLPISGSDGALY 50
          RQ L +    Y +     K+ +   DG  Y
Sbjct: 45 RQYLIQNFDLYKKFPKDSKIKVIMKDGGYY 74


>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 15 DGALYRRQQLEKQAAEYMQQLPAGKLPI------SGSDGALYRRQQLEKQVPLHDLNANL 68
          DG L         AAE++  +    LP+          G     +     V + D     
Sbjct: 11 DGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYT 70

Query: 69 CHNLTADEIKCEKMECQHM 87
              TAD ++ ++ +  ++
Sbjct: 71 SAMATADFLRRQEGKKAYV 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 328,276
Number of extensions: 12435
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)