BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15167
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JQ5|A Chain A, Solution Structure Of Rpa3114, A Sec-C Motif Containing
Protein From Rhodopseudomonas Palustris; Northeast
Structural Genomics Consortium Target Rpt5 ONTARIO
CENTER FOR STRUCTURAL PROTEOMICS TARGET RP3097
Length = 128
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 4 FTHPGGPDTNHVQRSQIGTRSGRWL 28
F GGP+ +H +RSQ GRW
Sbjct: 96 FRRGGGPEQSHHERSQFRKARGRWY 120
>pdb|2J8M|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8M|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8N|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8N|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8R|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
pdb|2J8R|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
Length = 172
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 16 QRSQIGTRSGRWLSVSTMQRQLSWTRPS 43
Q Q+G + GRWL ++ MQ L TR +
Sbjct: 144 QMPQVGQKFGRWLDLTFMQLNLDPTRSA 171
>pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
R86a Mutant From Aquifex Aeolicus
Length = 255
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 14 HVQRSQIGTRSGRWLSVSTMQRQLSWTRPSLLEGHKLAH 52
V + +GT SGR V TM + S+T+ L++ LA
Sbjct: 184 QVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQ 222
>pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
R126a Mutant From Aquifex Aeolicus
Length = 255
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 14 HVQRSQIGTRSGRWLSVSTMQRQLSWTRPSLLEGHKLAH 52
V + +GT SGR V TM + S+T+ L++ LA
Sbjct: 184 QVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQ 222
>pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
T125a Mutant From Aquifex Aeolicus
Length = 255
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 14 HVQRSQIGTRSGRWLSVSTMQRQLSWTRPSLLEGHKLAH 52
V + +GT SGR V TM + S+T+ L++ LA
Sbjct: 184 QVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQ 222
>pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Aquifex Aeolicus
Length = 255
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 14 HVQRSQIGTRSGRWLSVSTMQRQLSWTRPSLLEGHKLAH 52
V + +GT SGR V TM + S+T+ L++ LA
Sbjct: 184 QVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQ 222
>pdb|1TPU|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
pdb|1TPU|B Chain B, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
Length = 247
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 7 PGGPDTNHVQRSQIGTRSGRWLSVSTMQRQLSWTRPSLLEGHKLAHDLGAGSPCLQC 63
P G T + + I W+ + +R+ + L G K+AH L G + C
Sbjct: 69 PKGAFTGEISPAMIKDIGAAWVILGNSERRHVFGESDELIGQKVAHALAEGLGVIAC 125
>pdb|1TPV|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
pdb|1TPV|B Chain B, S96p Change Is A Second-Site Suppressor For H95n Sluggish
Mutant Triosephosphate Isomerase
Length = 247
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 7 PGGPDTNHVQRSQIGTRSGRWLSVSTMQRQLSWTRPSLLEGHKLAHDLGAGSPCLQC 63
P G T + + I W+ + +R+ + L G K+AH L G + C
Sbjct: 69 PKGAFTGEISPAMIKDIGAAWVILGNPERRHVFGESDELIGQKVAHALAEGLGVIAC 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,649,443
Number of Sequences: 62578
Number of extensions: 87151
Number of successful extensions: 264
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 23
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)