Query psy15167
Match_columns 75
No_of_seqs 64 out of 66
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 22:16:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dl0_A J-atracotoxin-HV1C; neu 26.2 39 0.0013 18.9 1.8 17 54-70 4-20 (37)
2 1k82_A Formamidopyrimidine-DNA 23.5 27 0.00092 24.9 1.1 11 56-66 239-249 (268)
3 2xzf_A Formamidopyrimidine-DNA 23.5 27 0.00092 24.9 1.1 11 56-66 241-251 (271)
4 1ee8_A MUTM (FPG) protein; bet 22.7 28 0.00097 24.8 1.1 11 56-66 234-244 (266)
5 1k3x_A Endonuclease VIII; hydr 22.7 29 0.00098 24.7 1.1 11 56-66 233-243 (262)
6 3u6p_A Formamidopyrimidine-DNA 22.5 29 0.00099 24.9 1.1 11 56-66 244-254 (273)
7 1u53_A Secreted protein Asp-2; 16.9 40 0.0014 21.9 0.7 12 56-68 177-188 (196)
8 1q3j_A ALO3; peptide, knottin, 16.3 50 0.0017 18.2 0.9 16 56-71 4-22 (36)
9 1dmc_A CD6 metallothionein-1; 14.1 67 0.0023 17.3 1.0 10 58-67 1-10 (31)
10 1dkc_A PAFP-S, antifungal pept 14.0 52 0.0018 18.4 0.6 15 56-70 6-23 (38)
No 1
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=26.17 E-value=39 Score=18.86 Aligned_cols=17 Identities=47% Similarity=1.095 Sum_probs=12.7
Q ss_pred CCCCcccccCCCCCCCC
Q psy15167 54 LGAGSPCLQCKDNCPGL 70 (75)
Q Consensus 54 ~~~GaPClkCk~~CpGF 70 (75)
.++-.||..|-.-|||-
T Consensus 4 tgadrpcaaccpccpgt 20 (37)
T 1dl0_A 4 TGADRPCAACCPCCPGT 20 (37)
T ss_dssp CCTTSBCCSSCCCCTTE
T ss_pred ccCCCccccccCCCCCc
Confidence 35667899887778884
No 2
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.51 E-value=27 Score=24.94 Aligned_cols=11 Identities=36% Similarity=0.948 Sum_probs=8.8
Q ss_pred CCcccccCCCC
Q psy15167 56 AGSPCLQCKDN 66 (75)
Q Consensus 56 ~GaPClkCk~~ 66 (75)
.|.||..|+..
T Consensus 239 ~g~pC~~CG~~ 249 (268)
T 1k82_A 239 KGEPCRVCGTP 249 (268)
T ss_dssp TTSBCTTTCCB
T ss_pred CCCCCCCCCCE
Confidence 48999999763
No 3
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=23.48 E-value=27 Score=24.91 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=8.8
Q ss_pred CCcccccCCCC
Q psy15167 56 AGSPCLQCKDN 66 (75)
Q Consensus 56 ~GaPClkCk~~ 66 (75)
.|.||..|+..
T Consensus 241 ~G~pC~~CG~~ 251 (271)
T 2xzf_A 241 TGEKCSRCGAE 251 (271)
T ss_dssp TTSBCTTTCCB
T ss_pred CCCCCCCCCCE
Confidence 48999999763
No 4
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.72 E-value=28 Score=24.84 Aligned_cols=11 Identities=36% Similarity=0.918 Sum_probs=8.8
Q ss_pred CCcccccCCCC
Q psy15167 56 AGSPCLQCKDN 66 (75)
Q Consensus 56 ~GaPClkCk~~ 66 (75)
.|.||..|+..
T Consensus 234 ~g~pC~~CG~~ 244 (266)
T 1ee8_A 234 EGLPCPACGRP 244 (266)
T ss_dssp TTSBCTTTCCB
T ss_pred CCCCCCCCCCE
Confidence 48999999763
No 5
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=22.71 E-value=29 Score=24.66 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=8.8
Q ss_pred CCcccccCCCC
Q psy15167 56 AGSPCLQCKDN 66 (75)
Q Consensus 56 ~GaPClkCk~~ 66 (75)
.|.||..|+..
T Consensus 233 ~g~pC~~CG~~ 243 (262)
T 1k3x_A 233 DGEPCERCGSI 243 (262)
T ss_dssp TTSBCTTTCCB
T ss_pred CcCCCCCCCCE
Confidence 48999999763
No 6
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.48 E-value=29 Score=24.90 Aligned_cols=11 Identities=36% Similarity=1.069 Sum_probs=8.9
Q ss_pred CCcccccCCCC
Q psy15167 56 AGSPCLQCKDN 66 (75)
Q Consensus 56 ~GaPClkCk~~ 66 (75)
.|.||..|+..
T Consensus 244 ~g~pC~~CG~~ 254 (273)
T 3u6p_A 244 QGNPCKRCGTP 254 (273)
T ss_dssp TTSBCTTTCCB
T ss_pred CcCCCCCCCCe
Confidence 48999999753
No 7
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Probab=16.90 E-value=40 Score=21.86 Aligned_cols=12 Identities=50% Similarity=1.448 Sum_probs=9.3
Q ss_pred CCcccccCCCCCC
Q psy15167 56 AGSPCLQCKDNCP 68 (75)
Q Consensus 56 ~GaPClkCk~~Cp 68 (75)
.|.||-+|. .|.
T Consensus 177 ~G~pcs~C~-~c~ 188 (196)
T 1u53_A 177 KGEPCSKCE-NCD 188 (196)
T ss_dssp BSSTTTTCS-SEE
T ss_pred cCCCCCCCC-CCC
Confidence 388999998 773
No 8
>1q3j_A ALO3; peptide, knottin, cystine-knot, antifungal protein; NMR {Synthetic} SCOP: g.3.4.2
Probab=16.27 E-value=50 Score=18.20 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=8.4
Q ss_pred CCcccccCCC---CCCCCc
Q psy15167 56 AGSPCLQCKD---NCPGLD 71 (75)
Q Consensus 56 ~GaPClkCk~---~CpGFe 71 (75)
.|++|..=++ =|+||=
T Consensus 4 nG~~C~~dgs~g~CcSGfC 22 (36)
T 1q3j_A 4 NGNGCQPNGSQGNCCSGYC 22 (36)
T ss_dssp SSSEEESSCSSCCCTTSCE
T ss_pred CCCccccCCCCccccccee
Confidence 4666765111 177773
No 9
>1dmc_A CD6 metallothionein-1; NMR {Callinectes sapidus} SCOP: g.46.1.1 PDB: 1dmd_A 1j5l_A
Probab=14.11 E-value=67 Score=17.33 Aligned_cols=10 Identities=50% Similarity=1.504 Sum_probs=6.7
Q ss_pred cccccCCCCC
Q psy15167 58 SPCLQCKDNC 67 (75)
Q Consensus 58 aPClkCk~~C 67 (75)
.||.+|-..|
T Consensus 1 ~PCeKCts~C 10 (31)
T 1dmc_A 1 SPCQKCTSGC 10 (31)
T ss_dssp CCCTTTTTTC
T ss_pred CccccccccC
Confidence 3788876655
No 10
>1dkc_A PAFP-S, antifungal peptide; three-strands beta sheet, antifungal protein; NMR {Phytolacca americana} SCOP: g.3.4.2
Probab=14.00 E-value=52 Score=18.37 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=8.0
Q ss_pred CCcccccCCC---CCCCC
Q psy15167 56 AGSPCLQCKD---NCPGL 70 (75)
Q Consensus 56 ~GaPClkCk~---~CpGF 70 (75)
.|++|..=++ =|+||
T Consensus 6 nG~~C~~dgs~g~CcSGf 23 (38)
T 1dkc_A 6 NGGRCNASAGPPYCCSSY 23 (38)
T ss_dssp SSEEECTTSCCCCCSSSE
T ss_pred CCCccccCCCCcccccce
Confidence 4667765111 17776
Done!