RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15167
         (75 letters)



>gnl|CDD|177466 PHA02684, PHA02684, ORF066 virion protein; Provisional.
          Length = 221

 Score = 27.0 bits (59), Expect = 0.90
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 7  PGGPDTNHVQRSQIGTRSGRWLSVSTMQ---RQLSWT 40
           G P T  +++S     +G W S +  +   R  +WT
Sbjct: 52 AGAPITARLRKSGFRGAAGAWASAADFEAGGRPSAWT 88


>gnl|CDD|223310 COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide transport and
           metabolism].
          Length = 412

 Score = 25.7 bits (57), Expect = 2.4
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%)

Query: 18  SQIGTRSGRWLSVSTMQRQLSWTRPSLLEGHKLAHDLG 55
           +QIG    R      +   L      L+E   LAHD+G
Sbjct: 77  AQIGRSIAR-----ELGLDLDLPFEDLVETACLAHDIG 109


>gnl|CDD|237248 PRK12890, PRK12890, allantoate amidohydrolase; Reviewed.
          Length = 414

 Score = 25.2 bits (56), Expect = 3.5
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 39 WTRPSLLEGHKLAHDL 54
          WTR +L +  + A  L
Sbjct: 28 WTRLALSDEERAARAL 43


>gnl|CDD|131121 TIGR02066, dsrB, sulfite reductase, dissimilatory-type beta
           subunit.  Dissimilatory sulfite reductase catalyzes the
           six-electron reduction of sulfite to sulfide, as the
           terminal reaction in dissimilatory sulfate reduction. It
           remains unclear however, whether trithionate and
           thiosulfate serve as intermediate compounds to sulfide,
           or as end products of sulfite reduction. Sulfite
           reductase is a multisubunit enzyme composed of dimers of
           either alpha/beta or alpha/beta/gamma subunits, each
           containing a siroheme and iron sulfur cluster prosthetic
           center. Found in sulfate-reducing bacteria, these genes
           are commonly located in an unidirectional gene cluster.
           This model describes the beta subunit of sulfite
           reductase [Central intermediary metabolism, Sulfur
           metabolism].
          Length = 341

 Score = 24.4 bits (53), Expect = 6.8
 Identities = 4/13 (30%), Positives = 6/13 (46%)

Query: 60  CLQCKDNCPGLDL 72
           C  C   CP + +
Sbjct: 219 CGNCYTMCPAMPI 231


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.137    0.478 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,621,321
Number of extensions: 251024
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 5
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)