RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15167
         (75 letters)



>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics,
           unknown function; 1.80A {Bacillus subtilis} SCOP:
           d.108.1.1
          Length = 175

 Score = 27.9 bits (63), Expect = 0.19
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 19  QIGTRSGRWLSVSTMQRQLS 38
            I    G+   +  + R+LS
Sbjct: 146 GIAEMDGKRYDLKILGRELS 165


>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family,
           phosphinothricin, methionine sulfone, methionine
           sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A
           2j8n_A 2j8r_A* 1yvo_A
          Length = 172

 Score = 27.5 bits (62), Expect = 0.27
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 19  QIGTRSGRWLSVSTMQRQL 37
           Q+G + GRWL ++ MQ  L
Sbjct: 147 QVGQKFGRWLDLTFMQLNL 165


>1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural
           genomics, protein structure initiative, NYSGXRC, PSI;
           2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
          Length = 175

 Score = 27.5 bits (62), Expect = 0.27
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 19  QIGTRSGRWLSVSTMQRQL 37
           ++GT+ GRWL ++ M+ +L
Sbjct: 148 EVGTKFGRWLDLTCMELKL 166


>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine
           sulfoximine; 2.35A {Acinetobacter baylyi}
          Length = 182

 Score = 27.5 bits (62), Expect = 0.28
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 19  QIGTRSGRWLSVSTMQRQL 37
           Q G + GRWL  +  Q  L
Sbjct: 155 QAGFKFGRWLDAAFYQLTL 173


>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086,
           structural genomics, center for STRU genomics of
           infectious diseases; HET: MSE; 1.75A {Salmonella
           typhimurium} PDB: 3dr8_A*
          Length = 174

 Score = 27.2 bits (61), Expect = 0.38
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 19  QIGTRSGRWLSVSTMQRQL 37
           Q+G + GRWL ++ MQ QL
Sbjct: 147 QVGVKFGRWLDLTFMQLQL 165


>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd;
           deoxyguanosinetriphosphate triphsphohydrolase,
           pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas
           syringae PV}
          Length = 451

 Score = 26.6 bits (59), Expect = 0.73
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 18  SQIGTRS-GRWLSVSTMQRQLSWTRP----SLLEGHKLAHDLG 55
           S +G RS G  +  +       W  P     +++   LAHD+G
Sbjct: 71  SCVG-RSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIG 112


>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl
           aminopeptidase, structura genomics; 2.39A {Cytophaga
           hutchinsonii atcc 33406}
          Length = 321

 Score = 24.6 bits (54), Expect = 3.5
 Identities = 4/20 (20%), Positives = 5/20 (25%)

Query: 8   GGPDTNHVQRSQIGTRSGRW 27
           G P      R      +G  
Sbjct: 102 GSPSAKEGYRLVGKDSNGDI 121


>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target
           10395N, triphosphohydro PSI-2, protein structure
           initiative; 1.95A {Leeuwenhoekiella blandensis}
          Length = 444

 Score = 24.7 bits (54), Expect = 3.8
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 11/48 (22%)

Query: 18  SQIGTRS-GRWLSVSTMQRQLSWTR---------PSLLEGHKLAHDLG 55
           S +G RS GR +    +++     +          +++    LAHD+G
Sbjct: 73  SVVG-RSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG 119


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.478 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,119,510
Number of extensions: 47085
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 10
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)