RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15167
         (75 letters)



>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score = 24.6 bits (53), Expect = 1.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 58 SPCLQCKDNCPGLDLHF 74
          SP +   D+ PG DL  
Sbjct: 1  SPGVVISDDEPGYDLDL 17


>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans
          [TaxId: 6239]}
          Length = 51

 Score = 23.0 bits (49), Expect = 1.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 7  PGGPDTNHVQRSQIGTRSGRWLSVSTMQRQLSWTR 41
          P G   +  +R+Q+       +S+  M R++S +R
Sbjct: 1  PRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSR 35


>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
           virus [TaxId: 12110]}
          Length = 476

 Score = 23.0 bits (49), Expect = 5.0
 Identities = 4/24 (16%), Positives = 13/24 (54%)

Query: 28  LSVSTMQRQLSWTRPSLLEGHKLA 51
           ++  T++  LS+ R   ++   ++
Sbjct: 403 MASKTLEAILSFARRGTIQEKLIS 426


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.478 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 283,239
Number of extensions: 9514
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 6
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)