BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15170
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 7 VELNVGGVFYTTSLSTITRDPSSHIARLF-SNPENSPQKDAKGKYFIDRDGVLFRYVLDY 65
V LNVGG ++ T+ T+ RDP S + RL ++P+ KD G Y IDRD F VL+Y
Sbjct: 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 67
Query: 66 LRNQMLILPESFREKERLRQEAIYYGLPAMI 96
LR+ L++ + E E + +EA +Y + ++I
Sbjct: 68 LRHGKLVINKDLAE-EGVLEEAEFYNITSLI 97
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 7 VELNVGGVFYTTSLSTITRDPSSHIARLF-SNPENSPQKDAKGKYFIDRDGVLFRYVLDY 65
V LNVGG ++ T+ T+ RDP S + RL ++P+ KD G Y IDRD F VL+Y
Sbjct: 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 73
Query: 66 LRNQMLILPESFREKERLRQEAIYYGLPAMI 96
LR+ L++ + E E + +EA +Y + ++I
Sbjct: 74 LRHGKLVINKDLAE-EGVLEEAEFYNITSLI 103
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 6 IVELNVGGVFYTTSLSTITRDPSSHIAR----LFSNPENSPQKDAKGKYFIDRDGVLFRY 61
++ LNV G + T T+ R P + + F +PE +YF DRD +FR+
Sbjct: 1 LIVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQ-------QYFFDRDPDIFRH 53
Query: 62 VLDYLRNQMLILP 74
+L++ R L P
Sbjct: 54 ILNFYRTGKLHYP 66
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 7 VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYL 66
V +NVGG+ + T +T+ + P++ ++RL N +YF DR +F +++Y
Sbjct: 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLN--YDPVLNEYFFDRHPGVFAQIINYY 64
Query: 67 RNQMLILP 74
R+ L P
Sbjct: 65 RSGKLHYP 72
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 6 IVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDY 65
++ LNV G + T +T+ R P + + + E +D K +YF DRD +FR VL++
Sbjct: 42 LIVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTK-EYFFDRDPEVFRCVLNF 98
Query: 66 LRNQMLILPESFREKERLRQEAIYYG-LPAMIDSIFHSD--DSKR 107
R L P + E +YG LP +I + + D KR
Sbjct: 99 YRTGKLHYPR-YECISAYDDELAFYGILPEIIGDCCYEEYKDRKR 142
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 6 IVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDY 65
++ LNV G + T +T+ R P + + + E +D K +YF DRD +FR VL++
Sbjct: 14 LIVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTK-EYFFDRDPEVFRCVLNF 70
Query: 66 LRNQMLILPESFREKERLRQEAIYYG-LPAMIDSIFHSD--DSKR 107
R L P + E +YG LP +I + + D KR
Sbjct: 71 YRTGKLHYP-RYECISAYDDELAFYGILPEIIGDCCYEEYKDRKR 114
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 6 IVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDY 65
++ LNV G + T +T+ R P + + + E +D K +YF DRD +FR VL++
Sbjct: 36 LIVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTK-EYFFDRDPEVFRCVLNF 92
Query: 66 LRNQMLILPESFREKERLRQEAIYYG-LPAMIDSIFHSD--DSKR 107
R L P + E +YG LP +I + + D KR
Sbjct: 93 YRTGKLHYP-RYECISAYDDELAFYGILPEIIGDCCYEEYKDRKR 136
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 39 ENSPQKDAKGKYFIDRDGVLFRYVLDYLR-NQMLILPESFREKERLRQEAIYYGLPAMID 97
ENS +K K F+ DG + +LD L+ N + + S + ERLR E + L D
Sbjct: 90 ENSLEKSQKSDNFMLNDGAI--ELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFD 147
Query: 98 SIFHSDDS 105
SI S D+
Sbjct: 148 SIIGSGDT 155
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 2 EYPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQK--DAKGKYFIDRDGVLF 59
E+P N+GGV + + ++F + N + KG F L
Sbjct: 185 EFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALA 244
Query: 60 RYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMID 97
R L ++ +LP S + IY G PA+I+
Sbjct: 245 RISKAILNDENAVLPLSVYMDGQYGLNDIYIGTPAVIN 282
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 241 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 300
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 301 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 330
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 241 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 300
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 301 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 330
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 241 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 300
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 301 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 330
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 240 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 299
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 300 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 329
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 241 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 300
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 301 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 330
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 241 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 300
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 301 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 330
>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal His8-Tag
Length = 373
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 241 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 300
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 301 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 330
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 241 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 300
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 301 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 330
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 241 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 300
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 301 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 330
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 240 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 299
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 300 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 329
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 240 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 299
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 300 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 329
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 35 FSNPENSPQKDAKGKYFID---RDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYG 91
F N +N P ++A Y I+ + G+ + ++ + E+FR+K R R + G
Sbjct: 240 FQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 299
Query: 92 LPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLAD 129
A +++ I G + AFGRD +A+
Sbjct: 300 AGAYT--------AEKAEDLIGKGLIDAVAFGRDYIAN 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,864,931
Number of Sequences: 62578
Number of extensions: 266581
Number of successful extensions: 502
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 21
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)