Query psy15170
Match_columns 233
No_of_seqs 294 out of 1147
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:21:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2723|consensus 100.0 4.2E-43 9.1E-48 305.2 4.8 197 2-203 6-218 (221)
2 PF02214 BTB_2: BTB/POZ domain 99.9 5.6E-27 1.2E-31 177.7 4.5 92 7-99 1-94 (94)
3 KOG2715|consensus 99.9 4.2E-27 9.1E-32 196.7 -0.6 135 4-159 20-155 (210)
4 KOG2716|consensus 99.9 1.9E-25 4.1E-30 195.8 6.5 102 1-104 1-102 (230)
5 KOG1665|consensus 99.9 1.8E-24 4E-29 188.4 5.6 101 2-103 6-107 (302)
6 KOG2714|consensus 99.9 8.6E-23 1.9E-27 190.6 7.5 97 4-102 10-107 (465)
7 KOG3713|consensus 99.7 2.7E-18 5.8E-23 163.0 7.0 96 4-100 30-133 (477)
8 KOG4390|consensus 99.6 1.3E-16 2.9E-21 148.5 4.0 92 4-100 39-132 (632)
9 KOG1545|consensus 99.0 1.1E-10 2.5E-15 108.3 3.3 88 4-94 60-148 (507)
10 smart00225 BTB Broad-Complex, 99.0 8.9E-10 1.9E-14 78.8 5.8 89 7-100 2-90 (90)
11 KOG3840|consensus 98.2 1.4E-06 2.9E-11 80.0 4.6 88 4-92 95-184 (438)
12 PHA03098 kelch-like protein; P 97.3 0.00028 6.1E-09 68.1 5.1 87 7-102 14-100 (534)
13 PF00651 BTB: BTB/POZ domain; 97.0 0.00059 1.3E-08 51.5 3.4 93 6-102 12-106 (111)
14 PHA02790 Kelch-like protein; P 96.7 0.0021 4.5E-08 62.0 4.7 88 9-103 26-116 (480)
15 PHA02713 hypothetical protein; 95.9 0.0085 1.8E-07 59.0 4.4 91 7-104 28-120 (557)
16 KOG4441|consensus 94.6 0.045 9.7E-07 54.4 4.7 90 6-101 38-128 (571)
17 KOG2723|consensus 78.0 1.7 3.8E-05 38.5 2.5 66 136-205 135-212 (221)
18 PF02519 Auxin_inducible: Auxi 64.4 7.1 0.00015 30.3 2.8 60 4-66 38-99 (100)
19 PF13783 DUF4177: Domain of un 51.8 46 0.00099 22.9 5.0 24 177-200 19-42 (61)
20 PF06399 GFRP: GTP cyclohydrol 51.2 13 0.00029 28.0 2.2 20 182-201 54-73 (83)
21 smart00584 TLDc domain in TBC 44.8 26 0.00055 28.9 3.3 46 112-163 25-76 (165)
22 TIGR02007 fdx_isc ferredoxin, 40.9 15 0.00034 28.4 1.3 24 182-205 25-49 (110)
23 PF00588 SpoU_methylase: SpoU 33.5 90 0.0019 24.6 4.7 44 176-232 60-103 (142)
24 KOG4350|consensus 32.4 23 0.0005 34.6 1.3 65 6-74 46-111 (620)
25 PRK11081 tRNA guanosine-2'-O-m 32.1 87 0.0019 27.7 4.8 25 177-201 76-100 (229)
26 PF12926 MOZART2: Mitotic-spin 31.9 19 0.00042 27.5 0.5 20 52-71 39-58 (88)
27 PF02142 MGS: MGS-like domain 31.7 28 0.0006 25.9 1.4 21 181-201 3-23 (95)
28 PF11848 DUF3368: Domain of un 31.5 37 0.00081 22.5 1.8 17 179-195 20-36 (48)
29 PF03975 CheD: CheD chemotacti 31.1 54 0.0012 25.6 3.0 28 177-204 63-90 (114)
30 PLN02862 2-C-methyl-D-erythrit 30.5 36 0.00077 30.2 2.0 19 179-197 135-153 (216)
31 COG3414 SgaB Phosphotransferas 29.8 26 0.00056 26.8 1.0 14 192-205 2-15 (93)
32 TIGR02008 fdx_plant ferredoxin 29.8 31 0.00068 26.0 1.4 24 182-205 24-47 (97)
33 PF14542 Acetyltransf_CG: GCN5 28.6 48 0.001 24.1 2.2 21 179-199 43-63 (78)
34 KOG0783|consensus 28.2 32 0.00068 36.6 1.5 96 6-102 560-684 (1267)
35 TIGR00151 ispF 2C-methyl-D-ery 28.1 43 0.00093 28.2 2.0 20 179-198 75-94 (155)
36 PRK10310 PTS system galactitol 27.4 26 0.00057 26.4 0.6 14 192-205 3-16 (94)
37 PRK00084 ispF 2-C-methyl-D-ery 27.2 45 0.00097 28.2 2.0 19 179-197 78-96 (159)
38 smart00851 MGS MGS-like domain 27.0 43 0.00094 24.5 1.7 19 182-200 4-22 (90)
39 cd00595 NDPk Nucleoside diphos 26.2 65 0.0014 25.6 2.7 22 176-197 13-34 (133)
40 cd00554 MECDP_synthase MECDP_s 26.0 49 0.0011 27.7 2.0 19 179-197 75-93 (153)
41 PF00334 NDK: Nucleoside dipho 25.1 54 0.0012 26.0 2.1 22 177-198 14-35 (135)
42 PRK10713 2Fe-2S ferredoxin Yfa 24.9 35 0.00076 25.1 0.9 23 183-205 22-44 (84)
43 cd04413 NDPk_I Nucleoside diph 24.8 74 0.0016 25.3 2.8 23 176-198 13-35 (130)
44 cd02188 gamma_tubulin Gamma-tu 24.1 70 0.0015 30.9 2.9 26 180-205 113-146 (431)
45 PF07534 TLD: TLD; InterPro: 23.9 33 0.00072 26.5 0.6 37 124-162 7-48 (139)
46 TIGR00746 arcC carbamate kinas 23.7 83 0.0018 29.1 3.3 21 182-202 173-193 (310)
47 smart00562 NDK These are enzym 23.4 83 0.0018 25.0 2.9 20 178-197 15-34 (135)
48 PRK00668 ndk mulitfunctional n 23.1 82 0.0018 25.2 2.8 21 177-197 15-35 (134)
49 COG0633 Fdx Ferredoxin [Energy 22.6 71 0.0015 24.4 2.2 24 182-205 24-47 (102)
50 PLN00222 tubulin gamma chain; 22.4 82 0.0018 30.7 3.1 26 180-205 115-148 (454)
51 PRK14545 nucleoside diphosphat 22.4 88 0.0019 25.4 2.8 21 177-197 17-37 (139)
52 KOG4591|consensus 21.6 44 0.00096 29.8 1.0 49 53-101 112-160 (280)
53 cd04412 NDPk7B Nucleoside diph 20.6 98 0.0021 24.8 2.7 22 176-197 13-34 (134)
54 COG0245 IspF 2C-methyl-D-eryth 20.4 85 0.0019 26.5 2.4 38 147-197 57-94 (159)
55 PF02302 PTS_IIB: PTS system, 20.3 37 0.00081 24.4 0.2 13 193-205 1-13 (90)
56 PRK14542 nucleoside diphosphat 20.3 1.1E+02 0.0023 24.9 2.9 21 177-197 15-35 (137)
57 CHL00134 petF ferredoxin; Vali 20.2 61 0.0013 24.6 1.4 24 182-205 26-49 (99)
58 PF02542 YgbB: YgbB family; I 20.2 55 0.0012 27.6 1.2 19 179-197 76-94 (157)
59 cd04882 ACT_Bt0572_2 C-termina 20.0 88 0.0019 20.5 2.1 15 180-194 50-64 (65)
No 1
>KOG2723|consensus
Probab=100.00 E-value=4.2e-43 Score=305.16 Aligned_cols=197 Identities=55% Similarity=0.908 Sum_probs=180.2
Q ss_pred CCCCeEEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHH
Q psy15170 2 EYPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKE 81 (233)
Q Consensus 2 ~~~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~ 81 (233)
.++++|+|||||++|+|+++||+++|+|+|++||++ +.++.+|.+|.||||||+.+|+|||+|||+.++.+|+++.+..
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~-~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSG-ELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCC-CCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHH
Confidence 357999999999999999999999999999999998 4677899999999999999999999999998899999999999
Q ss_pred HHHHHHHhcCChhHHHhccccccc----------------CCCCceEEEeeecccccccCCchhhhhceeeeEEEEeeee
Q psy15170 82 RLRQEAIYYGLPAMIDSIFHSDDS----------------KRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVT 145 (233)
Q Consensus 82 ~L~~EA~fy~L~~Li~~l~~~~~~----------------~~~~~~i~i~yr~~~~~~rd~~~~~~f~~~~ri~v~~~~~ 145 (233)
.|++||+||+|..+...+.+..+. .+..++++++||+++ ++|+++++++|+++.+|++||..+
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 163 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLNSGQIDTERRNRFCRSDECDGLRARGGPTLGYRGSL-FGRDAQADEKFRRVVRILVCGRGA 163 (221)
T ss_pred HHHHHHHHHccccHHHHHhcccccccccccccccccccccccccccccccchhhe-ecCcccceeeccchhhhhhhhhhh
Confidence 999999999999776655433221 134578899999999 999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCcceeeeccCcchHHHHHHHHHhcCcEEEEecCCCCC
Q psy15170 146 LCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGSGTA 203 (233)
Q Consensus 146 l~~~vFg~~~n~s~d~~~~~~~~y~~rf~lk~~~leq~~~~l~~~gf~~~~~~~~g~~ 203 (233)
+++++| +++|+++||++|+++.|++++++|+. ||+|+.+.+.|++++++|+.++.
T Consensus 164 l~~~~~-d~~~~~r~~~~g~~~~~~~~~l~~~l--~qgF~i~s~~g~~~~~~~~~~~~ 218 (221)
T KOG2723|consen 164 LGKEVF-DTLNESRDPDRGPPEVYTSRVLLKFL--EQGFDIDSEFGFHMDACNSSSTR 218 (221)
T ss_pred hhhccc-CCCCceecCCCCCcccchHHHHHHHH--HhhcccccccCcchhhhccccee
Confidence 999999 99999999999989999999999988 99999999999999999988775
No 2
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.93 E-value=5.6e-27 Score=177.73 Aligned_cols=92 Identities=48% Similarity=0.790 Sum_probs=76.3
Q ss_pred EEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhcc-ceecCCCCcchHHHHHH
Q psy15170 7 VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRN-QMLILPESFREKERLRQ 85 (233)
Q Consensus 7 V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~-g~l~lP~~~~e~~~L~~ 85 (233)
|+|||||++|.|+++||.+.|+|+|++|++++......+.+++|||||||.+|++||+|||+ ++++.|.+. .+..|++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~-~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEI-CLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS--HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCch-hHHHHHH
Confidence 79999999999999999999999999999964223466789999999999999999999999 788877665 4678999
Q ss_pred HHHhcCChhH-HHhc
Q psy15170 86 EAIYYGLPAM-IDSI 99 (233)
Q Consensus 86 EA~fy~L~~L-i~~l 99 (233)
||+||+|.+| ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6654
No 3
>KOG2715|consensus
Probab=99.92 E-value=4.2e-27 Score=196.74 Aligned_cols=135 Identities=32% Similarity=0.500 Sum_probs=110.1
Q ss_pred CCeEEEEECCeEEEecHHhhccCCCCccccccCCC-CCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHHH
Q psy15170 4 PAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNP-ENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKER 82 (233)
Q Consensus 4 ~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~-~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~~ 82 (233)
+.||+|||||+.|.|+++||.+.|.|+|.++++.. ..+..+|++|.|||||||.+|..||||||+|+|++.. +.+- -
T Consensus 20 s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-l~ee-G 97 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-LSEE-G 97 (210)
T ss_pred eEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh-hhhh-c
Confidence 47999999999999999999999999999999865 3345789999999999999999999999999999876 6554 5
Q ss_pred HHHHHHhcCChhHHHhcccccccCCCCceEEEeeecccccccCCchhhhhceeeeEEEEeeeecccccccccccCCC
Q psy15170 83 LRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNESR 159 (233)
Q Consensus 83 L~~EA~fy~L~~Li~~l~~~~~~~~~~~~i~i~yr~~~~~~rd~~~~~~f~~~~ri~v~~~~~l~~~vFg~~~n~s~ 159 (233)
+++||+||++++|+..++++++.. ... --+++. ..+.|++.|++.+|+..|- +.|.+|
T Consensus 98 vL~EAefyn~~~li~likd~i~dR-d~~--------------~tq~~~--k~vyrvLqcqeeeltqmvS--tmsDgw 155 (210)
T KOG2715|consen 98 VLEEAEFYNDPSLIQLIKDRIQDR-DAM--------------VTQEAD--KFVYRVLQCQEEELTQMVS--TMSDGW 155 (210)
T ss_pred cchhhhccCChHHHHHHHHHHHHH-hhh--------------ccccch--hHHHHHHHHHHHHHHHHHh--hccccH
Confidence 999999999999999999886641 100 012223 3479999999999888864 445555
No 4
>KOG2716|consensus
Probab=99.92 E-value=1.9e-25 Score=195.82 Aligned_cols=102 Identities=30% Similarity=0.457 Sum_probs=94.4
Q ss_pred CCCCCeEEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchH
Q psy15170 1 MEYPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREK 80 (233)
Q Consensus 1 m~~~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~ 80 (233)
|.+...|+|||||+.|.|+++||+++ +++|..|++.+ .++..|..|.+||||+|++|..||||||+|.+.||++..++
T Consensus 1 ~~~~~~vkLnvGG~~F~Tsk~TLtk~-dg~fk~m~e~~-i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel 78 (230)
T KOG2716|consen 1 LSMSETVKLNVGGTIFKTSKSTLTKF-DGFFKTMLETD-IPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKEL 78 (230)
T ss_pred CCccceEEEecCCeEEEeehhhhhhh-hhHHHHHhhcC-CccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHH
Confidence 56789999999999999999999996 78999999976 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHhcccccc
Q psy15170 81 ERLRQEAIYYGLPAMIDSIFHSDD 104 (233)
Q Consensus 81 ~~L~~EA~fy~L~~Li~~l~~~~~ 104 (233)
.+|++||+||.|++|++.|+.+..
T Consensus 79 ~El~~EA~fYlL~~Lv~~C~~~i~ 102 (230)
T KOG2716|consen 79 KELLREAEFYLLDGLVELCQSAIA 102 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999999999999999999987543
No 5
>KOG1665|consensus
Probab=99.90 E-value=1.8e-24 Score=188.45 Aligned_cols=101 Identities=29% Similarity=0.475 Sum_probs=91.3
Q ss_pred CCCCeEEEEECCeEEEecHHhhc-cCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchH
Q psy15170 2 EYPAIVELNVGGVFYTTSLSTIT-RDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREK 80 (233)
Q Consensus 2 ~~~~~V~LNVGG~~F~Tt~sTL~-~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~ 80 (233)
+++.+|+|||||++|+||++||+ +.|||||+.||+++.+....|.+|.|||||+|.+|++||||||+|+++.-.++.-
T Consensus 6 ~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~- 84 (302)
T KOG1665|consen 6 NLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDC- 84 (302)
T ss_pred ChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccH-
Confidence 35689999999999999999996 7999999999999866668899999999999999999999999999987777754
Q ss_pred HHHHHHHHhcCChhHHHhccccc
Q psy15170 81 ERLRQEAIYYGLPAMIDSIFHSD 103 (233)
Q Consensus 81 ~~L~~EA~fy~L~~Li~~l~~~~ 103 (233)
..+++||+||+|-.|++.|+...
T Consensus 85 lgvLeeArff~i~sL~~hle~~~ 107 (302)
T KOG1665|consen 85 LGVLEEARFFQILSLKDHLEDSR 107 (302)
T ss_pred HHHHHHhhHHhhHhHHhHHhhhc
Confidence 45999999999999999998743
No 6
>KOG2714|consensus
Probab=99.87 E-value=8.6e-23 Score=190.62 Aligned_cols=97 Identities=37% Similarity=0.538 Sum_probs=85.8
Q ss_pred CCeEEEEECCeEEEecHHhhccCC-CCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHHH
Q psy15170 4 PAIVELNVGGVFYTTSLSTITRDP-SSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKER 82 (233)
Q Consensus 4 ~~~V~LNVGG~~F~Tt~sTL~~~P-~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~~ 82 (233)
.++|+|||||++|.|+++||+..| ||+|++|+++++ ...+++.+.+||||||++|..||||||+|.|+++..+.+ ..
T Consensus 10 ~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~-~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~-~l 87 (465)
T KOG2714|consen 10 GDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRI-NSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPE-RL 87 (465)
T ss_pred CceEEEecCceEEecchhhhhcCCcchHHHHHhcCcc-ccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchh-hh
Confidence 489999999999999999999988 999999999875 457889999999999999999999999999999777654 34
Q ss_pred HHHHHHhcCChhHHHhcccc
Q psy15170 83 LRQEAIYYGLPAMIDSIFHS 102 (233)
Q Consensus 83 L~~EA~fy~L~~Li~~l~~~ 102 (233)
+.+||.||||.+|+..|.-+
T Consensus 88 lhdEA~fYGl~~llrrl~~~ 107 (465)
T KOG2714|consen 88 LHDEAMFYGLTPLLRRLTLC 107 (465)
T ss_pred hhhhhhhcCcHHHHHHhhcC
Confidence 66799999999999855433
No 7
>KOG3713|consensus
Probab=99.74 E-value=2.7e-18 Score=162.96 Aligned_cols=96 Identities=28% Similarity=0.428 Sum_probs=83.4
Q ss_pred CCeEEEEECCeEEEecHHhhccCCCCccccccCCCC-------CCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCC
Q psy15170 4 PAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPE-------NSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPES 76 (233)
Q Consensus 4 ~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~-------~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~ 76 (233)
++.|.|||||++|.+.++||.+.|.++|++|..+.. ..-+....++||+||+|.+|.+||||||+|||+.|.+
T Consensus 30 ~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p~~ 109 (477)
T KOG3713|consen 30 DRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHVPAD 109 (477)
T ss_pred CcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeeccccc
Confidence 458999999999999999999999999999987541 1125567899999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhH-HHhcc
Q psy15170 77 FREKERLRQEAIYYGLPAM-IDSIF 100 (233)
Q Consensus 77 ~~e~~~L~~EA~fy~L~~L-i~~l~ 100 (233)
+|... +.+|.+||+|++. ++.|.
T Consensus 110 vC~~~-F~eEL~yWgI~~~~le~CC 133 (477)
T KOG3713|consen 110 VCPLS-FEEELDYWGIDEAHLESCC 133 (477)
T ss_pred cchHH-HHHHHHHhCCChhhhhHHh
Confidence 99875 9999999999864 55554
No 8
>KOG4390|consensus
Probab=99.63 E-value=1.3e-16 Score=148.54 Aligned_cols=92 Identities=29% Similarity=0.472 Sum_probs=77.7
Q ss_pred CCeEEEEECCeEEEecHHhhccCCCCccccccCCCCCC-CCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHHH
Q psy15170 4 PAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENS-PQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKER 82 (233)
Q Consensus 4 ~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~-~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~~ 82 (233)
++.+.|||.|++|+|.+.||.++|+++|+.- ..+ .+..+.|+||+||||++|+|||||+|+|+|+.|..-| +..
T Consensus 39 De~lvlNvSGrRFeTWknTLeryPdTLLGSs----EkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~EC-i~A 113 (632)
T KOG4390|consen 39 DELLVLNVSGRRFETWKNTLERYPDTLLGSS----EKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHEC-ISA 113 (632)
T ss_pred CcEEEEeccccchhHHHhHHHhCchhhhCCc----chheeecCCcccccccCChHHHHHHHHHhhcCcccCchHHH-HHH
Confidence 4679999999999999999999999998853 122 3567889999999999999999999999999998876 445
Q ss_pred HHHHHHhcCCh-hHHHhcc
Q psy15170 83 LRQEAIYYGLP-AMIDSIF 100 (233)
Q Consensus 83 L~~EA~fy~L~-~Li~~l~ 100 (233)
.-+|..||||- +|+.-|.
T Consensus 114 yDeELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 114 YDEELAFYGLVPELIGDCC 132 (632)
T ss_pred hhhhhhHhcccHHHHhhhh
Confidence 78899999985 5665553
No 9
>KOG1545|consensus
Probab=99.03 E-value=1.1e-10 Score=108.29 Aligned_cols=88 Identities=22% Similarity=0.324 Sum_probs=75.8
Q ss_pred CCeEEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhcc-ceecCCCCcchHHH
Q psy15170 4 PAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRN-QMLILPESFREKER 82 (233)
Q Consensus 4 ~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~-g~l~lP~~~~e~~~ 82 (233)
.++|+|||.|-+|+|...||.++|+++|+.--. ......+..++||+||+..-|..||.|++. |++..|.+++ ++.
T Consensus 60 ~ervvINisGlRFeTql~TL~qfP~TLLGDp~k--R~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVP-lDi 136 (507)
T KOG1545|consen 60 CERVVINISGLRFETQLKTLAQFPNTLLGDPAK--RMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVP-LDI 136 (507)
T ss_pred ccEEEEEeccceehHHHHHHhhCchhhcCCHHH--hcccccccchhhcccCCCCccceEEEEeecCceecCCcccc-HHH
Confidence 378999999999999999999999999986422 123355678999999999999999999999 6788898875 788
Q ss_pred HHHHHHhcCChh
Q psy15170 83 LRQEAIYYGLPA 94 (233)
Q Consensus 83 L~~EA~fy~L~~ 94 (233)
+.+|.+||+|.+
T Consensus 137 F~eEirFyqlG~ 148 (507)
T KOG1545|consen 137 FLEEIRFYQLGD 148 (507)
T ss_pred HHHHHHHHHhhH
Confidence 999999999974
No 10
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.99 E-value=8.9e-10 Score=78.84 Aligned_cols=89 Identities=26% Similarity=0.336 Sum_probs=72.2
Q ss_pred EEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHHHHHHH
Q psy15170 7 VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQE 86 (233)
Q Consensus 7 V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~~L~~E 86 (233)
|.|+|||+.|.+.+..|...+ ++|..|+.+.+.. .+.....+.|.++..|+.||+|+.++++.++.. ....+++.
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s-~~f~~~~~~~~~~--~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~--~~~~l~~~ 76 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACS-PYFKALFSGDFKE--SKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE--NVEELLEL 76 (90)
T ss_pred eEEEECCEEEehHHHHHhhcC-HHHHHHHcCCCcc--CCCCEEEecCCCHHHHHHHHHeecCceeecCHH--HHHHHHHH
Confidence 569999999999999999885 5899998864321 123333455899999999999999999988776 45679999
Q ss_pred HHhcCChhHHHhcc
Q psy15170 87 AIYYGLPAMIDSIF 100 (233)
Q Consensus 87 A~fy~L~~Li~~l~ 100 (233)
|+||++++|++.|+
T Consensus 77 a~~~~~~~l~~~c~ 90 (90)
T smart00225 77 ADYLQIPGLVELCE 90 (90)
T ss_pred HHHHCcHHHHhhhC
Confidence 99999999988774
No 11
>KOG3840|consensus
Probab=98.21 E-value=1.4e-06 Score=79.98 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCeEEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEc--CCCCchHHHhhhhccceecCCCCcchHH
Q psy15170 4 PAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFID--RDGVLFRYVLDYLRNQMLILPESFREKE 81 (233)
Q Consensus 4 ~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFID--RDp~~F~~ILnyLR~g~l~lP~~~~e~~ 81 (233)
+++|.+-|.|.+|.+++..|+..|.++|..||.++..-....++|+|-+- -...+|+.||+|+.+|.+..|+.+. +.
T Consensus 95 ~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vS-vp 173 (438)
T KOG3840|consen 95 GDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVS-VS 173 (438)
T ss_pred CcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCc-hH
Confidence 57899999999999999999999999999999987433355688999773 3567999999999999999999986 45
Q ss_pred HHHHHHHhcCC
Q psy15170 82 RLRQEAIYYGL 92 (233)
Q Consensus 82 ~L~~EA~fy~L 92 (233)
+|.+.++|.-|
T Consensus 174 ELrEACDYLli 184 (438)
T KOG3840|consen 174 ELREACDYLLV 184 (438)
T ss_pred HHHhhcceEEe
Confidence 57777777654
No 12
>PHA03098 kelch-like protein; Provisional
Probab=97.32 E-value=0.00028 Score=68.08 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=69.5
Q ss_pred EEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHHHHHHH
Q psy15170 7 VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQE 86 (233)
Q Consensus 7 V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~~L~~E 86 (233)
|.+.|+|+.|..-|..|.... .+|..||++... +.++-|.-++..|+.||+|+-+|++.+..+ ....|+.-
T Consensus 14 l~~~~~~~~~~~Hk~vLaa~S-~yF~~mf~~~~~------~~~i~l~~~~~~~~~~l~y~Ytg~~~i~~~--~~~~ll~~ 84 (534)
T PHA03098 14 IIIVNGGGIIKVHKIILSSSS-EYFKKMFKNNFK------ENEINLNIDYDSFNEVIKYIYTGKINITSN--NVKDILSI 84 (534)
T ss_pred EEEEcCCEEEEeHHHHHHhhh-HHHHHHHhCCCC------CceEEecCCHHHHHHHHHHhcCCceEEcHH--HHHHHHHH
Confidence 444559999999999998764 389999987522 345544229999999999999999988665 35679999
Q ss_pred HHhcCChhHHHhcccc
Q psy15170 87 AIYYGLPAMIDSIFHS 102 (233)
Q Consensus 87 A~fy~L~~Li~~l~~~ 102 (233)
|.+|+|+.|++.|++.
T Consensus 85 A~~l~~~~l~~~C~~~ 100 (534)
T PHA03098 85 ANYLIIDFLINLCINY 100 (534)
T ss_pred HHHhCcHHHHHHHHHH
Confidence 9999999998877653
No 13
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.04 E-value=0.00059 Score=51.49 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=69.7
Q ss_pred eEEEEEC-CeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEE-cCCCCchHHHhhhhccceecCCCCcchHHHH
Q psy15170 6 IVELNVG-GVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFI-DRDGVLFRYVLDYLRNQMLILPESFREKERL 83 (233)
Q Consensus 6 ~V~LNVG-G~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFI-DRDp~~F~~ILnyLR~g~l~lP~~~~e~~~L 83 (233)
-+.|.|| |+.|.+.+..|.... .+|..||.+. ........++-+ |-++..|..||+|+-+|.+.++ +......+
T Consensus 12 D~~i~v~d~~~~~vhk~iL~~~S-~~F~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~~l 87 (111)
T PF00651_consen 12 DVTIRVGDGKTFYVHKNILAARS-PYFRNLFEGS--KFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVEEL 87 (111)
T ss_dssp -EEEEETTTEEEEE-HHHHHHHB-HHHHHHHTTT--TSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHHHH
T ss_pred CEEEEECCCEEEeechhhhhccc-hhhhhccccc--ccccccccccccccccccccccccccccCCcccCC-HHHHHHHH
Confidence 4889999 999999999997653 4999999864 101111124433 5789999999999999998876 22345679
Q ss_pred HHHHHhcCChhHHHhcccc
Q psy15170 84 RQEAIYYGLPAMIDSIFHS 102 (233)
Q Consensus 84 ~~EA~fy~L~~Li~~l~~~ 102 (233)
++-|++|+++.|.+.|...
T Consensus 88 l~lA~~~~~~~L~~~~~~~ 106 (111)
T PF00651_consen 88 LELADKLQIPELKKACEKF 106 (111)
T ss_dssp HHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHH
Confidence 9999999999999888654
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=96.68 E-value=0.0021 Score=62.05 Aligned_cols=88 Identities=9% Similarity=0.010 Sum_probs=69.3
Q ss_pred EEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEE---EcCCCCchHHHhhhhccceecCCCCcchHHHHHH
Q psy15170 9 LNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYF---IDRDGVLFRYVLDYLRNQMLILPESFREKERLRQ 85 (233)
Q Consensus 9 LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yF---IDRDp~~F~~ILnyLR~g~l~lP~~~~e~~~L~~ 85 (233)
|-|.|..|..-|.-|.... .+|..||+++..+ .+.++. +|=|+..++.||+|+.+|++.+..+- ...++.
T Consensus 26 ~~~~~~~~~~HR~VLAa~S-~YFraMF~~~~~E----s~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n--V~~ll~ 98 (480)
T PHA02790 26 IEAIGGNIIVNSTILKKLS-PYFRTHLRQKYTK----NKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN--VVNLLR 98 (480)
T ss_pred EEEcCcEEeeehhhhhhcC-HHHHHHhcCCccc----cccceEEEecCcCHHHHHHHHHhheeeeEEEeccc--HHHHHH
Confidence 4566778888999998874 4999999976322 122333 27899999999999999999987663 557999
Q ss_pred HHHhcCChhHHHhccccc
Q psy15170 86 EAIYYGLPAMIDSIFHSD 103 (233)
Q Consensus 86 EA~fy~L~~Li~~l~~~~ 103 (233)
-|.+++++.+++.|.+-.
T Consensus 99 aA~~Lqi~~v~~~C~~fL 116 (480)
T PHA02790 99 ASILTSVEFIIYTCINFI 116 (480)
T ss_pred HHHHhChHHHHHHHHHHH
Confidence 999999999998887643
No 15
>PHA02713 hypothetical protein; Provisional
Probab=95.92 E-value=0.0085 Score=59.05 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=70.8
Q ss_pred EEEEEC-CeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEE-cCCCCchHHHhhhhccceecCCCCcchHHHHH
Q psy15170 7 VELNVG-GVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFI-DRDGVLFRYVLDYLRNQMLILPESFREKERLR 84 (233)
Q Consensus 7 V~LNVG-G~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFI-DRDp~~F~~ILnyLR~g~l~lP~~~~e~~~L~ 84 (233)
|+|.|+ |+.|..-|.-|.... .+|..||+++..+ .....++-| +-++..|+.||+|+-+|++ +.+ ....|+
T Consensus 28 V~L~v~~~~~f~~Hr~vLaa~S-~YF~amF~~~~~e--~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~~~--nv~~ll 100 (557)
T PHA02713 28 VIITIGDGEEIKAHKTILAAGS-KYFRTLFTTPMII--RDLVTRVNLQMFDKDAVKNIVQYLYNRHI--SSM--NVIDVL 100 (557)
T ss_pred EEEEeCCCCEEeehHHHHhhcC-HHHHHHhcCCchh--hccCceEEeccCCHHHHHHHHHHhcCCCC--CHH--HHHHHH
Confidence 789998 899999999998764 4999999875211 122345544 6899999999999999984 333 356799
Q ss_pred HHHHhcCChhHHHhcccccc
Q psy15170 85 QEAIYYGLPAMIDSIFHSDD 104 (233)
Q Consensus 85 ~EA~fy~L~~Li~~l~~~~~ 104 (233)
.-|.+++|+.+++.|.+-..
T Consensus 101 ~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 101 KCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred HHHHHHCHHHHHHHHHHHHH
Confidence 99999999999988876433
No 16
>KOG4441|consensus
Probab=94.59 E-value=0.045 Score=54.36 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=72.8
Q ss_pred eEEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccE-EEcCCCCchHHHhhhhccceecCCCCcchHHHHH
Q psy15170 6 IVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKY-FIDRDGVLFRYVLDYLRNQMLILPESFREKERLR 84 (233)
Q Consensus 6 ~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~y-FIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~~L~ 84 (233)
.|.|-||++.|..-|--|.... .+|..||.+... .....++ +.+-||..+..||+|.-+|++.+..+ ....|+
T Consensus 38 Dv~L~v~~~~~~aHR~VLAa~S-~YFraMFt~~l~---e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~--nVq~ll 111 (571)
T KOG4441|consen 38 DVTLLVGDREFPAHRVVLAACS-PYFRAMFTSGLK---ESKQKEINLEGVDPETLELLLDYAYTGKLEISED--NVQELL 111 (571)
T ss_pred eEEEEECCeeechHHHHHHhcc-HHHHHHhcCCcc---cccceEEEEecCCHHHHHHHHHHhhcceEEechH--hHHHHH
Confidence 4899999999999999998764 499999997522 2233333 44789999999999999999988765 356799
Q ss_pred HHHHhcCChhHHHhccc
Q psy15170 85 QEAIYYGLPAMIDSIFH 101 (233)
Q Consensus 85 ~EA~fy~L~~Li~~l~~ 101 (233)
+-|.+++|.++++.|.+
T Consensus 112 ~aA~~lQi~~v~~~C~~ 128 (571)
T KOG4441|consen 112 EAASLLQIPEVVDACCE 128 (571)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 99999999999887754
No 17
>KOG2723|consensus
Probab=77.96 E-value=1.7 Score=38.46 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=50.2
Q ss_pred eeEEEEeeeeccccccccccc--------CCCCC-CCCCCCcceeeeccCc-ch--HHHHHHHHHhcCcEEEEecCCCCC
Q psy15170 136 TRILVCGRVTLCRDVFGETLN--------ESRDP-DHGLTDRYTARFFLKH-SS--IEQAFDMLQEQGFHLVGSCGSGTA 203 (233)
Q Consensus 136 ~ri~v~~~~~l~~~vFg~~~n--------~s~d~-~~~~~~~y~~rf~lk~-~~--leq~~~~l~~~gf~~~~~~~~g~~ 203 (233)
.|+.+.|+.+.+.+.|++... -+|.+ |+.+ .+|++... +. .+|.+....+.||.+.++|++...
T Consensus 135 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~----~~r~~~~g~~~~~~~~~l~~~l~qgF~i~s~~g~~~~ 210 (221)
T KOG2723|consen 135 YRGSLFGRDAQADEKFRRVVRILVCGRGALGKEVFDTLN----ESRDPDRGPPEVYTSRVLLKFLEQGFDIDSEFGFHMD 210 (221)
T ss_pred chhheecCcccceeeccchhhhhhhhhhhhhhcccCCCC----ceecCCCCCcccchHHHHHHHHHhhcccccccCcchh
Confidence 788889999999999998632 34555 5444 67777664 43 469999999999999999988755
Q ss_pred CC
Q psy15170 204 GS 205 (233)
Q Consensus 204 ~~ 205 (233)
..
T Consensus 211 ~~ 212 (221)
T KOG2723|consen 211 AC 212 (221)
T ss_pred hh
Confidence 43
No 18
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=64.37 E-value=7.1 Score=30.30 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=44.2
Q ss_pred CCeEEEEECC--eEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhh
Q psy15170 4 PAIVELNVGG--VFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYL 66 (233)
Q Consensus 4 ~~~V~LNVGG--~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyL 66 (233)
...+...||. ++|.+..+.|. +| .|..|+.....+.--+.+|.+.|.+|...|++||..|
T Consensus 38 ~G~~~VyVG~~~~Rfvvp~~~L~-hp--~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 38 KGHFAVYVGEERRRFVVPVSYLN-HP--LFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred CCeEEEEeCccceEEEechHHcC-ch--hHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence 4567888986 78999888774 33 6777765322223334589999999999999999876
No 19
>PF13783 DUF4177: Domain of unknown function (DUF4177)
Probab=51.82 E-value=46 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=20.4
Q ss_pred cchHHHHHHHHHhcCcEEEEecCC
Q psy15170 177 HSSIEQAFDMLQEQGFHLVGSCGS 200 (233)
Q Consensus 177 ~~~leq~~~~l~~~gf~~~~~~~~ 200 (233)
-..+++++.++.+.|.+||+....
T Consensus 19 ~~~~~~~Ln~~g~eGWeLV~~~~~ 42 (61)
T PF13783_consen 19 PEDLEEILNEYGKEGWELVSIIPP 42 (61)
T ss_pred HHHHHHHHHHHHhCCcEEEEEEcC
Confidence 346789999999999999988766
No 20
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=51.20 E-value=13 Score=28.03 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=17.9
Q ss_pred HHHHHHHhcCcEEEEecCCC
Q psy15170 182 QAFDMLQEQGFHLVGSCGSG 201 (233)
Q Consensus 182 q~~~~l~~~gf~~~~~~~~g 201 (233)
+++++|...||++||.+|=|
T Consensus 54 ~VLnKLE~~G~kVvsmtgvg 73 (83)
T PF06399_consen 54 VVLNKLEKMGYKVVSMTGVG 73 (83)
T ss_dssp HHHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHhcCeEEEEEeccC
Confidence 88999999999999998654
No 21
>smart00584 TLDc domain in TBC and LysM domain containing proteins.
Probab=44.82 E-value=26 Score=28.95 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=34.4
Q ss_pred EEEeeecccccccCCchhhhhce------eeeEEEEeeeecccccccccccCCCCCCC
Q psy15170 112 ITIGYRGSFAFGRDGLADVKFRK------ITRILVCGRVTLCRDVFGETLNESRDPDH 163 (233)
Q Consensus 112 i~i~yr~~~~~~rd~~~~~~f~~------~~ri~v~~~~~l~~~vFg~~~n~s~d~~~ 163 (233)
.++.|+. .+||..-..|.+ .+.|+|+. +..+.|||.+.++.|.++.
T Consensus 25 ~~llyss----~~~G~s~~~~~~~~~~~~~P~lliik--~~~~~ifGaf~~~~w~~~~ 76 (165)
T smart00584 25 WTLLYSS----SQHGYSLNTLYRKVEGYRPPTLLIIK--DTDGEVFGAYASQAWRVSD 76 (165)
T ss_pred eEEEEEc----CcCCccHHHHHHHhcccCCCEEEEEE--eCCCCEEEEEcCCCCccCC
Confidence 6788887 478887766643 25788873 5567999999999997764
No 22
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=40.89 E-value=15 Score=28.43 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=19.6
Q ss_pred HHHHHHHhcCcEEEEecCC-CCCCC
Q psy15170 182 QAFDMLQEQGFHLVGSCGS-GTAGS 205 (233)
Q Consensus 182 q~~~~l~~~gf~~~~~~~~-g~~~~ 205 (233)
..+|-|..+|..+-++|+| |+++.
T Consensus 25 tLL~a~~~~gi~i~~~CgG~G~Cgt 49 (110)
T TIGR02007 25 TILDVALDNGIEIEHACEKSCACTT 49 (110)
T ss_pred hHHHHHHHcCCCccccCCCCceeCC
Confidence 4578899999999999986 77653
No 23
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=33.47 E-value=90 Score=24.60 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=31.1
Q ss_pred CcchHHHHHHHHHhcCcEEEEecCCCCCCCCCCCCCCCCCchhhhcccccceEEEee
Q psy15170 176 KHSSIEQAFDMLQEQGFHLVGSCGSGTAGSTAPSDLKPGVDAEESRWNHYNEFVFCR 232 (233)
Q Consensus 176 k~~~leq~~~~l~~~gf~~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~e~~f~r 232 (233)
++..++++++.|.+.||.+++...+++. -.|-.|..-.=+||-+
T Consensus 60 ~~~~~~~~l~~~~~~g~~i~~~~~~~~~-------------~~~~~~~~~~~lv~G~ 103 (142)
T PF00588_consen 60 RVDDLEEALKDLKENGYTIVATSPGATP-------------LYELDFPKKVALVFGN 103 (142)
T ss_dssp EESSHHHHHHHHHHTTEEEEEESTTSCE-------------GGGSHTTSSEEEEEEB
T ss_pred eeehhhhhcccccccccccceeeecccc-------------ccccccccceEEEEcC
Confidence 3567899999999999999988763332 2244666666666654
No 24
>KOG4350|consensus
Probab=32.45 E-value=23 Score=34.60 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=45.0
Q ss_pred eEEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccE-EEcCCCCchHHHhhhhccceecCC
Q psy15170 6 IVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKY-FIDRDGVLFRYVLDYLRNQMLILP 74 (233)
Q Consensus 6 ~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~y-FIDRDp~~F~~ILnyLR~g~l~lP 74 (233)
-|++-|..++|-.-|-.|... .++|.+|+-|+..+. .+..+ .=+-+...|+.+|.|+-+|++.+.
T Consensus 46 DVtfvve~~rfpAHRvILAaR-s~yFRAlLYgGm~Es---~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~ 111 (620)
T KOG4350|consen 46 DVTFVVEDTRFPAHRVILAAR-SSYFRALLYGGMQES---HQQLIPLQETNSEAFRALLRYIYTGKIDLA 111 (620)
T ss_pred ceEEEEeccccchhhhhHHHH-HHHHHHHHhhhhhhh---hhcccccccccHHHHHHHHHHHhhcceecc
Confidence 478888888888888777654 368888876652211 11111 124567899999999999998764
No 25
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=32.12 E-value=87 Score=27.72 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHhcCcEEEEecCCC
Q psy15170 177 HSSIEQAFDMLQEQGFHLVGSCGSG 201 (233)
Q Consensus 177 ~~~leq~~~~l~~~gf~~~~~~~~g 201 (233)
|..++.+++.|.+.||+++|+..++
T Consensus 76 ~~~~~~~i~~lk~~g~~i~at~~~~ 100 (229)
T PRK11081 76 HRTIGDAVAHLKGQGMQILATHLSD 100 (229)
T ss_pred eCCHHHHHHHHHhCCCEEEEEeCCC
Confidence 5578899999999999999987543
No 26
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.93 E-value=19 Score=27.51 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=16.6
Q ss_pred EcCCCCchHHHhhhhcccee
Q psy15170 52 IDRDGVLFRYVLDYLRNQML 71 (233)
Q Consensus 52 IDRDp~~F~~ILnyLR~g~l 71 (233)
|.-||++|+.||+.||.+.-
T Consensus 39 v~~dp~VFriildLL~~nVs 58 (88)
T PF12926_consen 39 VPMDPEVFRIILDLLRLNVS 58 (88)
T ss_pred CCcChHHHHHHHHHHHcCCC
Confidence 35699999999999997653
No 27
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.68 E-value=28 Score=25.93 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCcEEEEecCCC
Q psy15170 181 EQAFDMLQEQGFHLVGSCGSG 201 (233)
Q Consensus 181 eq~~~~l~~~gf~~~~~~~~g 201 (233)
.....+|++.||+++|+.|++
T Consensus 3 ~~~a~~l~~lG~~i~AT~gTa 23 (95)
T PF02142_consen 3 VPLAKRLAELGFEIYATEGTA 23 (95)
T ss_dssp HHHHHHHHHTTSEEEEEHHHH
T ss_pred HHHHHHHHHCCCEEEEChHHH
Confidence 456789999999999997654
No 28
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.50 E-value=37 Score=22.49 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCcEEE
Q psy15170 179 SIEQAFDMLQEQGFHLV 195 (233)
Q Consensus 179 ~leq~~~~l~~~gf~~~ 195 (233)
.++.++++|.++||++-
T Consensus 20 ~~~~~l~~l~~~g~~is 36 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRIS 36 (48)
T ss_pred hHHHHHHHHHHcCcccC
Confidence 46788999999999974
No 29
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=31.07 E-value=54 Score=25.59 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHhcCcEEEEecCCCCCC
Q psy15170 177 HSSIEQAFDMLQEQGFHLVGSCGSGTAG 204 (233)
Q Consensus 177 ~~~leq~~~~l~~~gf~~~~~~~~g~~~ 204 (233)
...++-|.+-|.+.|+.|++.-.||+.+
T Consensus 63 ~rNv~~a~~~L~~~gi~I~a~dvGG~~~ 90 (114)
T PF03975_consen 63 ERNVEAARELLAEEGIPIVAEDVGGNFG 90 (114)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-SSS-
T ss_pred HHHHHHHHHHHHHCCCcEEEeeCCCCCC
Confidence 4467899999999999999999999865
No 30
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=30.52 E-value=36 Score=30.17 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCcEEEEe
Q psy15170 179 SIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 179 ~leq~~~~l~~~gf~~~~~ 197 (233)
.|++|.+.|.++||+++-.
T Consensus 135 lL~~a~~ll~~~G~~I~Nv 153 (216)
T PLN02862 135 FIKEAVRLMHEAGYEIGNL 153 (216)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 5789999999999999754
No 31
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=29.82 E-value=26 Score=26.82 Aligned_cols=14 Identities=29% Similarity=0.869 Sum_probs=12.0
Q ss_pred cEEEEecCCCCCCC
Q psy15170 192 FHLVGSCGSGTAGS 205 (233)
Q Consensus 192 f~~~~~~~~g~~~~ 205 (233)
.++.++||.|.++|
T Consensus 2 ~KIL~aCG~GvgSS 15 (93)
T COG3414 2 IKILAACGNGVGSS 15 (93)
T ss_pred cEEEEECCCCccHH
Confidence 37899999999876
No 32
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=29.81 E-value=31 Score=25.99 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.7
Q ss_pred HHHHHHHhcCcEEEEecCCCCCCC
Q psy15170 182 QAFDMLQEQGFHLVGSCGSGTAGS 205 (233)
Q Consensus 182 q~~~~l~~~gf~~~~~~~~g~~~~ 205 (233)
..+|-|.++|..+-++|+.|+++.
T Consensus 24 tLLda~~~~Gi~i~~~C~~G~Cg~ 47 (97)
T TIGR02008 24 YILDAAEEAGIDLPYSCRAGACST 47 (97)
T ss_pred cHHHHHHHcCCCCCcCCCCccCCC
Confidence 457888999999999999999874
No 33
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=28.55 E-value=48 Score=24.06 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhcCcEEEEecC
Q psy15170 179 SIEQAFDMLQEQGFHLVGSCG 199 (233)
Q Consensus 179 ~leq~~~~l~~~gf~~~~~~~ 199 (233)
-++.|++-..+.|++++.+|+
T Consensus 43 L~~~~l~~a~~~~~kv~p~C~ 63 (78)
T PF14542_consen 43 LVEAALDYARENGLKVVPTCS 63 (78)
T ss_dssp HHHHHHHHHHHTT-EEEETSH
T ss_pred HHHHHHHHHHHCCCEEEEECH
Confidence 457899999999999999995
No 34
>KOG0783|consensus
Probab=28.25 E-value=32 Score=36.55 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=64.5
Q ss_pred eEEEEECCeEEEecHHhhccCCCCccccccCCCCC-----CC-Cc---CCCccEEE-cCCCCchHHHhhhhccceecCC-
Q psy15170 6 IVELNVGGVFYTTSLSTITRDPSSHIARLFSNPEN-----SP-QK---DAKGKYFI-DRDGVLFRYVLDYLRNQMLILP- 74 (233)
Q Consensus 6 ~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~-----~~-~~---d~~g~yFI-DRDp~~F~~ILnyLR~g~l~lP- 74 (233)
-|++.|||.+|..-+=.|.... ++|.+|+.+.-. .+ .. ...-.+|+ |-.|.+|.+||+|+-+..+--|
T Consensus 560 DVtf~vg~~~F~aHKfIl~~rs-~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~ 638 (1267)
T KOG0783|consen 560 DVTFYVGTSMFHAHKFILCARS-SFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPW 638 (1267)
T ss_pred eEEEEecCeecccceEEEEecc-HHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCCc
Confidence 4899999999999988887664 588887764311 11 11 12335666 4799999999999999754333
Q ss_pred --------------CCcc----hHHHHHHHHHhcCChhHHHhcccc
Q psy15170 75 --------------ESFR----EKERLRQEAIYYGLPAMIDSIFHS 102 (233)
Q Consensus 75 --------------~~~~----e~~~L~~EA~fy~L~~Li~~l~~~ 102 (233)
.+.. --++|..-++-|.|.+|...+...
T Consensus 639 heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s~ 684 (1267)
T KOG0783|consen 639 HEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVSR 684 (1267)
T ss_pred cccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhhc
Confidence 1111 123577778888888887666543
No 35
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=28.09 E-value=43 Score=28.17 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCcEEEEec
Q psy15170 179 SIEQAFDMLQEQGFHLVGSC 198 (233)
Q Consensus 179 ~leq~~~~l~~~gf~~~~~~ 198 (233)
.|++|.+.+.++||+++-.-
T Consensus 75 lL~~~~~~~~~~g~~i~niD 94 (155)
T TIGR00151 75 LLRHAVALIKEKGYRIGNVD 94 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEE
Confidence 57899999999999998553
No 36
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.38 E-value=26 Score=26.42 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=11.7
Q ss_pred cEEEEecCCCCCCC
Q psy15170 192 FHLVGSCGSGTAGS 205 (233)
Q Consensus 192 f~~~~~~~~g~~~~ 205 (233)
++++.+||+|.++|
T Consensus 3 ~kILvvCgsG~~TS 16 (94)
T PRK10310 3 RKIIVACGGAVATS 16 (94)
T ss_pred CeEEEECCCchhHH
Confidence 47889999999765
No 37
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=27.18 E-value=45 Score=28.18 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCcEEEEe
Q psy15170 179 SIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 179 ~leq~~~~l~~~gf~~~~~ 197 (233)
.|++|.+.+.++||+++-.
T Consensus 78 lL~~~~~~~~~~g~~i~ni 96 (159)
T PRK00084 78 LLREVARLLRAKGYRIGNV 96 (159)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 6789999999999999854
No 38
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=27.04 E-value=43 Score=24.51 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=15.5
Q ss_pred HHHHHHHhcCcEEEEecCC
Q psy15170 182 QAFDMLQEQGFHLVGSCGS 200 (233)
Q Consensus 182 q~~~~l~~~gf~~~~~~~~ 200 (233)
....+|.+.||++.|..|+
T Consensus 4 ~~~~~l~~lG~~i~AT~gT 22 (90)
T smart00851 4 ELAKRLAELGFELVATGGT 22 (90)
T ss_pred HHHHHHHHCCCEEEEccHH
Confidence 5567899999999988654
No 39
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=26.18 E-value=65 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=18.2
Q ss_pred CcchHHHHHHHHHhcCcEEEEe
Q psy15170 176 KHSSIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 176 k~~~leq~~~~l~~~gf~~~~~ 197 (233)
++..+.+.+++|.++||++++.
T Consensus 13 ~~~~~g~Il~~i~~~Gf~I~~~ 34 (133)
T cd00595 13 AEGLLGEIIMRIEDAGFEIVAM 34 (133)
T ss_pred hcCcHHHHHHHHHHcCCEEEEe
Confidence 3446678999999999999975
No 40
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=25.99 E-value=49 Score=27.72 Aligned_cols=19 Identities=26% Similarity=0.702 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCcEEEEe
Q psy15170 179 SIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 179 ~leq~~~~l~~~gf~~~~~ 197 (233)
.|++|.+++.++||+++-.
T Consensus 75 lL~~~~~~~~~~g~~i~ni 93 (153)
T cd00554 75 LLEEALKLIREKGYEIVNI 93 (153)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 5789999999999999854
No 41
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=25.09 E-value=54 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=16.9
Q ss_pred cchHHHHHHHHHhcCcEEEEec
Q psy15170 177 HSSIEQAFDMLQEQGFHLVGSC 198 (233)
Q Consensus 177 ~~~leq~~~~l~~~gf~~~~~~ 198 (233)
+..+..++++|.++||.+++.-
T Consensus 14 ~~~~g~Ii~~l~~~Gf~I~~~k 35 (135)
T PF00334_consen 14 RGHAGEIIDRLEEAGFEIVAMK 35 (135)
T ss_dssp TT-HHHHHHHHHHHT-EEEEEE
T ss_pred ccchHHHHHHHHHcCCeeeehh
Confidence 3466789999999999999764
No 42
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=24.95 E-value=35 Score=25.05 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.4
Q ss_pred HHHHHHhcCcEEEEecCCCCCCC
Q psy15170 183 AFDMLQEQGFHLVGSCGSGTAGS 205 (233)
Q Consensus 183 ~~~~l~~~gf~~~~~~~~g~~~~ 205 (233)
.+|-|.++|+.+-.+|..|.+++
T Consensus 22 lL~a~~~~gi~~p~~Cr~G~Cg~ 44 (84)
T PRK10713 22 LLAALESHNVAVEYQCREGYCGS 44 (84)
T ss_pred HHHHHHHcCCCCCCCCCCeECCC
Confidence 47778899999999999999875
No 43
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=24.78 E-value=74 Score=25.34 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=18.5
Q ss_pred CcchHHHHHHHHHhcCcEEEEec
Q psy15170 176 KHSSIEQAFDMLQEQGFHLVGSC 198 (233)
Q Consensus 176 k~~~leq~~~~l~~~gf~~~~~~ 198 (233)
++..+..++++|.++||++++.=
T Consensus 13 ~~~~~g~Il~~i~~~Gf~I~~~k 35 (130)
T cd04413 13 QRGLIGEIISRFERKGLKIVALK 35 (130)
T ss_pred hcCcHHHHHHHHHHCCCEEEEee
Confidence 34556789999999999999763
No 44
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=24.05 E-value=70 Score=30.90 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=19.3
Q ss_pred HHHHHHHHHh--------cCcEEEEecCCCCCCC
Q psy15170 180 IEQAFDMLQE--------QGFHLVGSCGSGTAGS 205 (233)
Q Consensus 180 leq~~~~l~~--------~gf~~~~~~~~g~~~~ 205 (233)
++++.|+|.. .||.+++|-||||.|.
T Consensus 113 ~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG 146 (431)
T cd02188 113 QEEILDIIDREADGSDSLEGFVLCHSIAGGTGSG 146 (431)
T ss_pred HHHHHHHHHHHHhcCCCcceeEEEecCCCCcchh
Confidence 4555555544 5999999999999653
No 45
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [].; PDB: 4ACJ_A.
Probab=23.86 E-value=33 Score=26.46 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=20.4
Q ss_pred cCCchhhhhce-----eeeEEEEeeeecccccccccccCCCCCC
Q psy15170 124 RDGLADVKFRK-----ITRILVCGRVTLCRDVFGETLNESRDPD 162 (233)
Q Consensus 124 rd~~~~~~f~~-----~~ri~v~~~~~l~~~vFg~~~n~s~d~~ 162 (233)
+||.....|++ .+.++|+ ++-.+.|||.+.+..|..+
T Consensus 7 ~dG~s~~~f~~~~~~~~~~l~iv--~t~~g~iFG~y~~~~~~~~ 48 (139)
T PF07534_consen 7 RDGFSFNTFHSKCDGKGPTLLIV--KTSDGQIFGAYTSQPWKSS 48 (139)
T ss_dssp HH-S-HHHHHHHHTT-S-EEEEE--EETTS-EEEEEESS-----
T ss_pred hhCcCHHHHHHhcCCCCCEEEEE--ECCCCcEEEEEeCCccccc
Confidence 66766666643 3777777 4556799999999999643
No 46
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=23.70 E-value=83 Score=29.11 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=16.1
Q ss_pred HHHHHHHhcCcEEEEecCCCC
Q psy15170 182 QAFDMLQEQGFHLVGSCGSGT 202 (233)
Q Consensus 182 q~~~~l~~~gf~~~~~~~~g~ 202 (233)
+++++|.+.|+-+++|-|||.
T Consensus 173 ~~I~~LL~~G~iVI~~ggggi 193 (310)
T TIGR00746 173 ETIKTLVENGVIVISSGGGGV 193 (310)
T ss_pred HHHHHHHHCCCEEEeCCCCCc
Confidence 789999999986665555553
No 47
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=23.42 E-value=83 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=16.9
Q ss_pred chHHHHHHHHHhcCcEEEEe
Q psy15170 178 SSIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 178 ~~leq~~~~l~~~gf~~~~~ 197 (233)
..+.+++++|.++||++++.
T Consensus 15 ~~~g~Il~~i~~~gf~I~~~ 34 (135)
T smart00562 15 GLIGEIISRFERKGFKIVAM 34 (135)
T ss_pred ccHHHHHHHHHHCCCEEEEE
Confidence 45568899999999999975
No 48
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=23.12 E-value=82 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHhcCcEEEEe
Q psy15170 177 HSSIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 177 ~~~leq~~~~l~~~gf~~~~~ 197 (233)
+..+.+++++|.++||.+++.
T Consensus 15 ~~~~g~Il~~i~~~Gf~I~~~ 35 (134)
T PRK00668 15 RGLIGEIISRFEKKGLKIVAL 35 (134)
T ss_pred cCcHHHHHHHHHHcCCEEEEe
Confidence 345568999999999999975
No 49
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=22.56 E-value=71 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=20.3
Q ss_pred HHHHHHHhcCcEEEEecCCCCCCC
Q psy15170 182 QAFDMLQEQGFHLVGSCGSGTAGS 205 (233)
Q Consensus 182 q~~~~l~~~gf~~~~~~~~g~~~~ 205 (233)
-.+|-+..+|..+..+|++|.++.
T Consensus 24 tiLe~a~~~gi~i~~~C~~g~C~T 47 (102)
T COG0633 24 TLLEAAERNGIPIEYACRGGACGT 47 (102)
T ss_pred HHHHHHHHCCCcceecCCCCccCc
Confidence 467888899999999999997653
No 50
>PLN00222 tubulin gamma chain; Provisional
Probab=22.42 E-value=82 Score=30.66 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=19.3
Q ss_pred HHHHHHHHHh--------cCcEEEEecCCCCCCC
Q psy15170 180 IEQAFDMLQE--------QGFHLVGSCGSGTAGS 205 (233)
Q Consensus 180 leq~~~~l~~--------~gf~~~~~~~~g~~~~ 205 (233)
++.++|+|.. .||-+++|-||||.|.
T Consensus 115 ~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG 148 (454)
T PLN00222 115 EEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSG 148 (454)
T ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCccch
Confidence 4555555544 5999999999999654
No 51
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=22.36 E-value=88 Score=25.41 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHhcCcEEEEe
Q psy15170 177 HSSIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 177 ~~~leq~~~~l~~~gf~~~~~ 197 (233)
+..+.+.++++.++||++++.
T Consensus 17 ~~~~g~Il~~i~~~Gf~I~~~ 37 (139)
T PRK14545 17 NGHIGGILDMITAAGFRIVAM 37 (139)
T ss_pred cCcHHHHHHHHHHCCCEEEEe
Confidence 445678899999999999965
No 52
>KOG4591|consensus
Probab=21.59 E-value=44 Score=29.78 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=41.0
Q ss_pred cCCCCchHHHhhhhccceecCCCCcchHHHHHHHHHhcCChhHHHhccc
Q psy15170 53 DRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFH 101 (233)
Q Consensus 53 DRDp~~F~~ILnyLR~g~l~lP~~~~e~~~L~~EA~fy~L~~Li~~l~~ 101 (233)
|-|++.|...+.|.-+..+.+..+-.-+..+.+-|.-|+|+.|.+.|++
T Consensus 112 Dad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k 160 (280)
T KOG4591|consen 112 DADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEK 160 (280)
T ss_pred ccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999876654445668888999999998887764
No 53
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=20.56 E-value=98 Score=24.79 Aligned_cols=22 Identities=14% Similarity=0.456 Sum_probs=18.4
Q ss_pred CcchHHHHHHHHHhcCcEEEEe
Q psy15170 176 KHSSIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 176 k~~~leq~~~~l~~~gf~~~~~ 197 (233)
+++.+..++++|.++||++++.
T Consensus 13 ~~~~~g~Ii~~i~~~gf~I~~~ 34 (134)
T cd04412 13 SHGLLGEILQQILDEGFEITAL 34 (134)
T ss_pred hcCchHHHHHHHHHCCCEEEEe
Confidence 4555678999999999999976
No 54
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=20.43 E-value=85 Score=26.55 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=25.5
Q ss_pred ccccccccccCCCCCCCCCCCcceeeeccCcchHHHHHHHHHhcCcEEEEe
Q psy15170 147 CRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 147 ~~~vFg~~~n~s~d~~~~~~~~y~~rf~lk~~~leq~~~~l~~~gf~~~~~ 197 (233)
++.+|+++..+--+.|+ | ..|++|.+.+.++||+++-.
T Consensus 57 IG~~Fp~~d~~~kgadS--------~-----~lL~~~~~~v~~~g~~i~Nv 94 (159)
T COG0245 57 IGKHFPDTDPRWKGADS--------R-----ILLKEAVELVREKGYRIGNV 94 (159)
T ss_pred chhcCCCCCcccCCCch--------H-----HHHHHHHHHHHHhCcEEEeE
Confidence 56778877432222222 2 36789999999999998743
No 55
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=20.34 E-value=37 Score=24.43 Aligned_cols=13 Identities=38% Similarity=0.739 Sum_probs=10.5
Q ss_pred EEEEecCCCCCCC
Q psy15170 193 HLVGSCGSGTAGS 205 (233)
Q Consensus 193 ~~~~~~~~g~~~~ 205 (233)
+++.+|++|.+++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5788999998765
No 56
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=20.27 E-value=1.1e+02 Score=24.93 Aligned_cols=21 Identities=14% Similarity=0.559 Sum_probs=17.5
Q ss_pred cchHHHHHHHHHhcCcEEEEe
Q psy15170 177 HSSIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 177 ~~~leq~~~~l~~~gf~~~~~ 197 (233)
...+.+.++++.++||++++.
T Consensus 15 ~~~~g~Ii~~i~~~Gf~I~~~ 35 (137)
T PRK14542 15 NKHVGNILQRIEKEGFKILGL 35 (137)
T ss_pred cCchHHHHHHHHHCCCEEEEe
Confidence 345668899999999999976
No 57
>CHL00134 petF ferredoxin; Validated
Probab=20.17 E-value=61 Score=24.60 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.0
Q ss_pred HHHHHHHhcCcEEEEecCCCCCCC
Q psy15170 182 QAFDMLQEQGFHLVGSCGSGTAGS 205 (233)
Q Consensus 182 q~~~~l~~~gf~~~~~~~~g~~~~ 205 (233)
-.+|-|.++|..+-.+|+.|+++.
T Consensus 26 tLL~a~~~~Gi~i~~~C~~G~Cg~ 49 (99)
T CHL00134 26 YILDAAEEQGIDLPYSCRAGACST 49 (99)
T ss_pred cHHHHHHHcCCCCCcCCCCccCCC
Confidence 458889999999999999999865
No 58
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=20.16 E-value=55 Score=27.59 Aligned_cols=19 Identities=21% Similarity=0.649 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCcEEEEe
Q psy15170 179 SIEQAFDMLQEQGFHLVGS 197 (233)
Q Consensus 179 ~leq~~~~l~~~gf~~~~~ 197 (233)
.|+.|.+.+.++||+++-.
T Consensus 76 lL~~~~~~~~~~g~~i~ni 94 (157)
T PF02542_consen 76 LLKEVVELLREKGYRIVNI 94 (157)
T ss_dssp HHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHcCcEEEEE
Confidence 5789999999999998754
No 59
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.00 E-value=88 Score=20.54 Aligned_cols=15 Identities=53% Similarity=0.882 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCcEE
Q psy15170 180 IEQAFDMLQEQGFHL 194 (233)
Q Consensus 180 leq~~~~l~~~gf~~ 194 (233)
++++.+.|.++||++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 889999999999986
Done!