RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15170
(233 letters)
>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain. The
N-terminal, cytoplasmic tetramerisation domain (T1) of
voltage-gated K+ channels encodes molecular
determinants for subfamily-specific assembly of
alpha-subunits into functional tetrameric channels. It
is distantly related to the BTB/POZ domain pfam00651.
Length = 92
Score = 65.3 bits (160), Expect = 4e-14
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 7 VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYL 66
V LNVGG + TS ST+TR P + + RL D +YF DR F +L++
Sbjct: 1 VRLNVGGKRFETSKSTLTRFPDTLLGRLLK--RCDFYDDDTNEYFFDRSPKHFETILNFY 58
Query: 67 RNQMLILPESFREKER-LRQEAIYYGLP 93
R L +E +YGL
Sbjct: 59 RTG-GKLHRPEEVCLDSFLEELEFYGLG 85
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac.
Domain in Broad-Complex, Tramtrack and Bric a brac.
Also known as POZ (poxvirus and zinc finger) domain.
Known to be a protein-protein interaction motif found
at the N-termini of several C2H2-type transcription
factors as well as Shaw-type potassium channels. Known
structure reveals a tightly intertwined dimer formed
via interactions between N-terminal strand and helix
structures. However in a subset of BTB/POZ domains,
these two secondary structures appear to be missing. Be
aware SMART predicts BTB/POZ domains without the beta1-
and alpha1-secondary structures.
Length = 97
Score = 43.4 bits (103), Expect = 5e-06
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 7 VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYL 66
V L VGG + + + A S+ + S + + Y D FR +L++L
Sbjct: 2 VTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEI---YLDDVSPEDFRALLNFL 58
Query: 67 RNQMLILPESFREKERLRQEAIYYGLPAMIDSI 99
L LPE E+ L + A Y +P +++
Sbjct: 59 YTGKLDLPEENVEE--LLELADYLQIPGLVELC 89
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 30.8 bits (70), Expect = 0.25
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 7/79 (8%)
Query: 50 YFIDRDGVLFRYVLDYLRNQMLILPESFREK-ERLRQEAIYYGL-----PAMIDSIFHSD 103
D DG L + L L +E + L+++ I L + +
Sbjct: 2 VLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL 61
Query: 104 DSKRGAGYITIGYRGSFAF 122
+ I G+ +
Sbjct: 62 GLDDYFDPV-ITSNGAAIY 79
>gnl|CDD|223319 COG0241, HisB, Histidinol phosphatase and related phosphatases
[Amino acid transport and metabolism].
Length = 181
Score = 30.0 bits (68), Expect = 0.67
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 49 KYFIDRDGVLFRYVLDYLRN-QMLILPESFREKERLRQEAIYYGLPAMIDS 98
F+DRDG + DY+ + Q A Y + S
Sbjct: 7 ALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQS 57
>gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP)
reversibly catalyzes trehalose synthesis and degradation
from alpha-glucose-1-phosphate (alpha-Glc-1-P) and
glucose. The catalyzing activity includes the
phosphorolysis of trehalose, which produce alpha-Glc-1-P
and glucose, and the subsequent synthesis of trehalose.
This family is most closely related to the GT1 family of
glycosyltransferases.
Length = 372
Score = 29.5 bits (67), Expect = 1.6
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 10 NVGGVFY------TTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVL 63
VGG+ T L + + I L +PE + A + + + ++ R++
Sbjct: 304 PVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLK 363
Query: 64 DYLR 67
DYL
Sbjct: 364 DYLY 367
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 28.9 bits (65), Expect = 2.1
Identities = 25/163 (15%), Positives = 42/163 (25%), Gaps = 18/163 (11%)
Query: 30 HIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIY 89
P D + +R+ + + + E+ + KE
Sbjct: 139 FTDPRDDLVLLFPDPDVVPYVLSEFFTAAYRFGHSLVPEGVDRIDENGQPKEIPDVP--- 195
Query: 90 YGLPAMIDSIFHSDD---SKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTL 146
+ D F++ S G + G+ A D D + G
Sbjct: 196 -----LKDFFFNTSRSILSDTGLDPLLRGFLRQPAGLIDQNVDDVMFLFGPLEGVGLDLA 250
Query: 147 CRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQE 189
LN R D GL R F+ D+L +
Sbjct: 251 A-------LNIQRGRDLGLPSYNEVRRFIGLKPPTSFQDILTD 286
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 717
Score = 28.7 bits (64), Expect = 3.2
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 74 PESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAF 122
P F E+ER +Q +++ L A++D +F S + Y GY +F F
Sbjct: 112 PAPFPEEERSKQPSVFTVLRAVLD-LFASPEDPLLGLYGAFGYDLAFQF 159
>gnl|CDD|185210 PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC;
Provisional.
Length = 895
Score = 28.4 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 102 SDDSKRGAGY---ITIGYRGSFAFGRDGL 127
S+ +R AG +T GY S A R+GL
Sbjct: 656 SNSHQRNAGSASSLTAGYSSSLALSRNGL 684
>gnl|CDD|151351 pfam10904, DUF2694, Protein of unknown function (DUF2694). This
family of proteins with unknown function appears to be
restricted to Mycobacterium spp.
Length = 101
Score = 26.9 bits (59), Expect = 3.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 183 AFDMLQEQGFHLVGSCGSGTAGSTAPSDLKPGVDAE 218
AFD + G LV SC G S A S+ DAE
Sbjct: 7 AFDTVHPSGHILVRSCRGGYMHSVALSEAAMETDAE 42
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 27.3 bits (60), Expect = 7.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 134 KITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAF 184
+I +L+ GR TL + T +SR+ +H + D RF + SI QA
Sbjct: 296 EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAM 346
>gnl|CDD|182447 PRK10422, PRK10422, lipopolysaccharide core biosynthesis protein;
Provisional.
Length = 352
Score = 27.0 bits (60), Expect = 9.2
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 161 PDHGLTDRY-----TARFFLK---HSSIEQAFDMLQEQGFHLVGSCG 199
G+T Y TAR K + D LQ +G+ +V + G
Sbjct: 177 DHLGVTQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSG 223
>gnl|CDD|233512 TIGR01656, Histidinol-ppas, histidinol-phosphate phosphatase
family domain. This domain is found in authentic
histidinol-phosphate phosphatases which are sometimes
found as stand-alone entities and sometimes as fusions
with imidazoleglycerol-phosphate dehydratase
(TIGR01261). Additionally, a family of proteins
including YaeD from E. coli (TIGR00213) and various
other proteins are closely related but may not have the
same substrate specificity. This domain is a member of
the haloacid-dehalogenase (HAD) superfamily of
aspartate-nucleophile hydrolases. This superfamily is
distinguished by the presence of three motifs: an
N-terminal motif containing the nucleophilic aspartate,
a central motif containing an conserved serine or
threonine, and a C-terminal motif containing a
conserved lysine (or arginine) and conserved
aspartates. More specifically, the domian modelled here
is a member of subfamily III of the HAD-superfamily by
virtue of lacking a "capping" domain in either of the
two common positions, between motifs 1 and 2, or
between motifs 2 and 3.
Length = 147
Score = 26.2 bits (58), Expect = 9.6
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 51 FIDRDGVLFR-YVLDYLR--NQMLILPESFREKERLRQEAIY 89
F+DRDGV+ V DY R + + P + LR
Sbjct: 4 FLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYT 45
>gnl|CDD|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family. This family
of proteins probably use S-AdoMet.
Length = 142
Score = 26.3 bits (59), Expect = 9.9
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 171 ARFFL---KHSSIEQAFDMLQEQGFHLVGSCGSGTA 203
A F L ++E+A L+E GF ++ + G
Sbjct: 52 ALFHLPLVIVDNLEEALKDLKEAGFWIIATSLKGKP 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.420
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,452,602
Number of extensions: 1206729
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 24
Length of query: 233
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 139
Effective length of database: 6,768,326
Effective search space: 940797314
Effective search space used: 940797314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)