RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15170
         (233 letters)



>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea
          hare (Aplysia californica) [TaxId: 6500]}
          Length = 100

 Score = 89.5 bits (222), Expect = 7e-24
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 7  VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYL 66
          V +NV G+ + T L T+ + P + +        N      + +YF DR+   F  +L + 
Sbjct: 3  VVINVSGLRFETQLKTLNQFPDTLLGNPQKR--NRYYDPLRNEYFFDRNRPSFDAILYFY 60

Query: 67 RNQMLILPESFREKERLRQEAIYYGLPAM 95
          ++   +        +   +E  +Y L   
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYELGEN 89


>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 105

 Score = 86.1 bits (213), Expect = 2e-22
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 6  IVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDY 65
          ++ LNV G  + T   T+ R P + +     +           +YF DRD  +FR++L++
Sbjct: 1  LIVLNVSGTRFQTWQDTLERYPDTLLGSSERDF---FYHPETQQYFFDRDPDIFRHILNF 57

Query: 66 LRNQMLILPESFREKERLRQEAIYYGLPAMI 96
           R   L  P          +E  ++GL   I
Sbjct: 58 YRTGKLHYPRHE-CISAYDEELAFFGLIPEI 87


>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
          {California sea hare (Aplysia californica) [TaxId:
          6500]}
          Length = 103

 Score = 80.7 bits (199), Expect = 2e-20
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 7  VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYL 66
          V +NVGG+ + T  +T+ + P++ ++RL              +YF DR   +F  +++Y 
Sbjct: 4  VIINVGGIRHETYKATLKKIPATRLSRLTEG--MLNYDPVLNEYFFDRHPGVFAQIINYY 61

Query: 67 RNQMLILPESFREKERLRQEAIYYGLP 93
          R+  L  P          +E  ++GL 
Sbjct: 62 RSGKLHYPTDVCG-PLFEEELEFWGLD 87


>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559
          {Mesorhizobium loti [TaxId: 381]}
          Length = 209

 Score = 26.1 bits (56), Expect = 3.5
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 51 FIDRDGVLFRYVLDYLRN--QMLILPESFREKERLRQ 85
          F+DRDG +     DY  +  ++++ P+         +
Sbjct: 27 FLDRDGTINVDT-DYPSDPAEIVLRPQMLPAIATANR 62


>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc
           {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 132

 Score = 25.2 bits (55), Expect = 4.6
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 178 SSIEQA-FDMLQEQGFHLVGSCGSGTAGSTAPSDL 211
           S++E+     L+++GF +V +  SG+       D+
Sbjct: 1   SAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDI 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 919,398
Number of extensions: 43190
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 11
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)