BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15173
(131 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147904876|ref|NP_001089127.1| CPD photolyase-like [Xenopus laevis]
gi|77799777|dbj|BAE46749.1| CPD photolyase-like [Xenopus laevis]
gi|126631428|gb|AAI33745.1| LOC733427 protein [Xenopus laevis]
Length = 557
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 52/60 (86%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+LEV++ K ++VDSF EEA+VRRELADNFC+YNKNYDK+EGA+DWAK TL DH
Sbjct: 366 VQRAILEVQKYRSKFKESVDSFVEEAVVRRELADNFCFYNKNYDKIEGAYDWAKNTLKDH 425
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 31/152 (20%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+CK+LNI FH LIG A +ILP FV+ H +G VV DF PLR + W + + K L
Sbjct: 175 GLQEVAEECKELNIPFHLLIGYAKDILPNFVKDHAIGGVVTDFSPLRVPLQWVEDVGKCL 234
Query: 65 PKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNF------------------ 106
P+DVPL+Q ++ ++P ++ +RR++ D
Sbjct: 235 PEDVPLVQ---VDAHNIVPCWVASIKQEYGARTIRRKVHDQLSQFLTEFPPVIKHPYEPK 291
Query: 107 ----------CYYNKNYDKVEGAFDWAKKTLN 128
CY + D+ G +WAK N
Sbjct: 292 FEAETVDWDKCYKSLEVDRTVGEVEWAKPGTN 323
>gi|312373837|gb|EFR21518.1| hypothetical protein AND_16935 [Anopheles darlingi]
Length = 529
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 54/61 (88%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRAVL V+ +H+++V SFCEEAIVRRELADNFC+YNKNYD ++GA+DWA+KTL+DH
Sbjct: 337 VQRAVLAVKSHGKRHTESVASFCEEAIVRRELADNFCFYNKNYDNLKGAYDWARKTLDDH 396
Query: 131 R 131
R
Sbjct: 397 R 397
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++C+KLNI FH L G A + +P FV+KH++G VV DF PLR M W + ++K L
Sbjct: 146 GLEEVAKECEKLNIHFHLLRGNAGQNVPAFVKKHRIGGVVCDFSPLRVPMQWVEDVRKAL 205
Query: 65 PKDVPLIQ 72
P +VPL Q
Sbjct: 206 PMEVPLCQ 213
>gi|170035601|ref|XP_001845657.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
gi|167877630|gb|EDS41013.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
Length = 510
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+L V++ S+ V SFCEEAIVRREL+DNFCYYNKNYD ++GA+DWA+KTL+DH
Sbjct: 318 VQRAILAVKKYGKGFSEGVASFCEEAIVRRELSDNFCYYNKNYDNLKGAYDWARKTLDDH 377
Query: 131 R 131
R
Sbjct: 378 R 378
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++C+ LNI+FH L G A + +P+FV+ HK+GAVV DF PLR W + ++K L
Sbjct: 127 GLEEVAKECESLNIQFHMLTGMAKDTVPKFVKAHKMGAVVCDFSPLRVPAQWVEDVRKAL 186
Query: 65 PKDVPLIQ 72
P +VPL Q
Sbjct: 187 PAEVPLCQ 194
>gi|158292451|ref|XP_313925.3| AGAP005052-PA [Anopheles gambiae str. PEST]
gi|157016998|gb|EAA09350.3| AGAP005052-PA [Anopheles gambiae str. PEST]
Length = 549
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 55/61 (90%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRAVL V++ ++S++V SFCEEAIVRREL+DNFC++NKNYD ++GA+DWA+KTL+DH
Sbjct: 357 VQRAVLTVKKHGKRYSESVASFCEEAIVRRELSDNFCFHNKNYDNLQGAYDWARKTLDDH 416
Query: 131 R 131
R
Sbjct: 417 R 417
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C++LNI+FH L G A E +P FV+KHK+G VV DF PLR M W D ++K L
Sbjct: 166 GLEEVAEECRRLNIQFHLLRGSAGENVPAFVKKHKIGGVVCDFSPLRVPMKWVDEVRKAL 225
Query: 65 PKDVPLIQ 72
P ++PL Q
Sbjct: 226 PMEIPLCQ 233
>gi|157123882|ref|XP_001653955.1| DNA photolyase [Aedes aegypti]
gi|108882857|gb|EAT47082.1| AAEL001787-PA [Aedes aegypti]
Length = 506
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 52/61 (85%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR VL V++ +S+ V +FCEE+IVRREL+DNFCYYNKNYD ++GA+DWA+KTL+DH
Sbjct: 315 VQRCVLAVKKYGKGYSEGVAAFCEESIVRRELSDNFCYYNKNYDNLKGAYDWAQKTLDDH 374
Query: 131 R 131
R
Sbjct: 375 R 375
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++C+ LNI FH L G A + +P+FV+ H +GAVV DF PLR M W + ++K L
Sbjct: 124 GLEEVAKECESLNINFHMLTGMAKDTIPKFVKTHNIGAVVCDFSPLRVPMKWVEDVRKSL 183
Query: 65 PKDVPLIQ 72
P +VPL Q
Sbjct: 184 PAEVPLCQ 191
>gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
pisum]
Length = 506
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 53/68 (77%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+E+ +CK L+I+FHFLIG A +ILP FV+KHKLGA+++DFMP+REH+ W L +
Sbjct: 121 GLEELETECKSLDIQFHFLIGCAADILPDFVKKHKLGAIIVDFMPVREHISWTKQLADRI 180
Query: 65 PKDVPLIQ 72
+VP+IQ
Sbjct: 181 GSEVPVIQ 188
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 48/60 (80%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR +LEV ++ ++ +V ++ EEAIVRREL+DNFC+YN YDK+EGA +WA+ +LN+HR
Sbjct: 313 QRCILEVSKLSKQYPDSVAAYREEAIVRRELSDNFCFYNPKYDKIEGAPNWAQTSLNEHR 372
>gi|387017650|gb|AFJ50943.1| Deoxyribodipyrimidine photo-lyase-like [Crotalus adamanteus]
Length = 526
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 50/60 (83%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+LEVR+ ++ ++V+ F EEA+VRRELADNFC+YN NYDK+EGA+DWAK TL H
Sbjct: 335 VQRAILEVRKHRARYKESVEGFIEEAVVRRELADNFCFYNPNYDKIEGAYDWAKTTLKLH 394
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C+ L+I FH L G A + +P FV +H +G VV DF PLR + W +++ L
Sbjct: 144 GLEEVAEECRMLDIPFHLLTGFAKDRVPHFVTQHGIGGVVTDFSPLRVPLQWVRDVQEQL 203
Query: 65 PKDVPLIQ 72
P DVPL Q
Sbjct: 204 PSDVPLAQ 211
>gi|224060613|ref|XP_002190613.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Taeniopygia
guttata]
Length = 697
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA+LEV++ + +VD+F EEA+VRRELA+NFCYYN+NYD V+GA+DWA+ TL H
Sbjct: 508 QRAILEVQKQRRNYKDSVDAFVEEAVVRRELAENFCYYNENYDSVQGAYDWAQTTLKLH 566
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C +LNI FH L+G A ++LP FV +H +G +V DF PLR W + +K+ L
Sbjct: 316 GLQEVAEECAELNIPFHLLLGYAKDVLPTFVVEHGVGGLVTDFSPLRLPRQWVEDVKERL 375
Query: 65 PKDVPLIQ 72
P+DVP Q
Sbjct: 376 PEDVPFAQ 383
>gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes]
gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes]
Length = 504
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++CK LNI+FH L G A ++LP FV H GAVV DF PLRE + W + +KK L
Sbjct: 127 GLEEVQKECKHLNIQFHLLHGAAGDVLPGFVTGHNFGAVVTDFSPLREPLQWLEAVKKGL 186
Query: 65 PKDVPLIQ 72
P+D+P IQ
Sbjct: 187 PEDIPFIQ 194
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR L+VR+ S +V +F EE +VRREL DNFC+YNKNYD V GA++WA+KTL DH
Sbjct: 319 QRVALQVRK---NSSPSVPAFIEELVVRRELTDNFCFYNKNYDSVTGAYEWAQKTLKDH 374
>gi|410924750|ref|XP_003975844.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Takifugu
rubripes]
Length = 538
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++CK L+++FH L G E+LP FV + LGAVV DF PLRE + W D LKK+
Sbjct: 157 GLEEVEKECKALDVQFHLLHGSVGEVLPGFVSERHLGAVVTDFSPLREPLKWLDDLKKEF 216
Query: 65 PKDVPLIQ 72
P+D+PLIQ
Sbjct: 217 PQDIPLIQ 224
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR L+V+R K AV SF EE +VRREL DNFC+YN+NYD VEGA +WA+KTL DH
Sbjct: 349 QRVALQVQRSGKKAGVAVSSFIEELVVRRELTDNFCFYNENYDSVEGAHEWARKTLKDH 407
>gi|47227913|emb|CAF97542.1| unnamed protein product [Tetraodon nigroviridis]
Length = 508
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV +CK L I+FH L G A ++LP FV + +LGAVV DF PLRE + W + +KK L
Sbjct: 129 GLEEVAAECKALGIQFHLLRGPAGDLLPGFVSEQQLGAVVTDFSPLREPLTWLEDVKKKL 188
Query: 65 PKDVPLIQ 72
PKDVPLIQ
Sbjct: 189 PKDVPLIQ 196
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR L+V+R K V SF EE +VRREL DNFC+YN+ YD VEGA++WA+KTL DH
Sbjct: 321 QRVALQVQRGGRKLGVGVSSFIEELVVRRELTDNFCFYNEKYDSVEGAYEWARKTLKDH 379
>gi|405960251|gb|EKC26192.1| Deoxyribodipyrimidine photo-lyase [Crassostrea gigas]
Length = 515
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 50/60 (83%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +L VR+ K+ ++V+S+ EEAI+RREL+DNFC+YNKNYD ++GA+DWAK+TL H
Sbjct: 325 VQRCILTVRQYRSKYKESVESYIEEAIIRRELSDNFCFYNKNYDSIDGAYDWAKQTLKVH 384
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++C++L I FH LIG A ++LP FV+ H++G V+ DF PLR W + K L
Sbjct: 134 GLEEVEKECQELGISFHLLIGHAKDVLPSFVKDHQIGGVITDFSPLRVPAEWVSAVSKAL 193
Query: 65 PKDVPLIQRAVLEVRRVLP 83
P D+PL Q ++ V+P
Sbjct: 194 PSDIPLCQ---VDAHNVVP 209
>gi|8134633|sp|Q28811.1|PHR_POTTR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1401039|dbj|BAA05041.1| photolyase [Potorous tridactylus]
Length = 532
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 50/60 (83%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+LEV++ ++ +V +F EEA+VRRELADNFC+YNKNYDK+EGA+DWA+ TL H
Sbjct: 344 VQRAILEVQKHRSRYPDSVTNFVEEAVVRRELADNFCFYNKNYDKLEGAYDWAQTTLRLH 403
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C+KL I FH L+G ++LP FV+ H +G +V DF PL H W ++ L
Sbjct: 153 GLEEVAEECEKLCIPFHLLLGLPKDVLPAFVQTHGIGGIVTDFSPLLHHTQWVKDVQDAL 212
Query: 65 PKDVPLIQ 72
P+ VP +Q
Sbjct: 213 PRQVPFVQ 220
>gi|345496163|ref|XP_001603285.2| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Nasonia
vitripennis]
Length = 546
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 53/61 (86%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +LE ++ +++K+V++F EEAIVRREL+DNFC+YN++YD ++GA+DWA++TLN H
Sbjct: 344 VQRCILEAKKYKSQYNKSVEAFMEEAIVRRELSDNFCFYNEHYDSLKGAYDWARETLNQH 403
Query: 131 R 131
R
Sbjct: 404 R 404
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGW 56
L+EV +DCK+LNI FH L G + + FVEK+K+GAV+ DF PLR + W
Sbjct: 153 ALEEVEKDCKELNINFHLLHGEPNTAIINFVEKYKMGAVIADFFPLRLPLFW 204
>gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans]
Length = 510
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
IQR +LE++ K +V +FCEEAIVRRELADNFC+YN+NYD +G DW++KTLN+H
Sbjct: 318 IQRCILEIKTYEHKFKDSVAAFCEEAIVRRELADNFCFYNQNYDNFQGLQDWSRKTLNEH 377
Query: 131 R 131
R
Sbjct: 378 R 378
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C+ LN+ FH L G AH+ L +F++ VV DF PLR + W + +K+ L
Sbjct: 127 GLEEVSEECEDLNVSFHLLKGPAHQSLVEFLKDVDAATVVCDFSPLRLPLQWLEEIKEVL 186
Query: 65 PKDVPLIQRAVLEVRRVLP 83
P +P IQ ++ V+P
Sbjct: 187 PTTIPFIQ---IDAHNVVP 202
>gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi]
gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi]
Length = 530
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R H + D+FCEEAIVRRELADNFCYYN++YD ++G DWA +TL +HR
Sbjct: 337 QRCALEVQRYTSMHKASADAFCEEAIVRRELADNFCYYNEHYDSLKGLHDWAYQTLQEHR 396
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 43/68 (63%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ LNI F L+G A E LP FV ++GAVV DF PLR W + K L
Sbjct: 145 GLQEVEQQCRDLNISFQLLLGPAVERLPAFVVAEEIGAVVCDFAPLRLPRQWVTDVVKAL 204
Query: 65 PKDVPLIQ 72
P++VPL Q
Sbjct: 205 PRNVPLTQ 212
>gi|358337824|dbj|GAA56147.1| deoxyribodipyrimidine photo-lyase, partial [Clonorchis sinensis]
Length = 893
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA+LEV+RV K K+VD+F EEA +RREL+DNFC+YN NYD ++GA+ WA+ TL H
Sbjct: 708 QRALLEVQRVRTKDPKSVDAFIEEAFIRRELSDNFCFYNPNYDSLKGAYQWAQDTLKCH 766
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 30/106 (28%)
Query: 5 GLKEVHEDCKKLNIEFH---------------------------FLIGGAHEILPQFVEK 37
GL EV ++C L I FH F G E + V++
Sbjct: 487 GLAEVEKECCALQIPFHLVLTDSPSSKIPTGNKRSYAAVEESDDFFEGTVAETVVNLVQR 546
Query: 38 HKLGAVVIDFMPLREHMGWADTLKKDLPKDVPLIQRAVLEVRRVLP 83
++G VV DF PLRE W + + LP +P Q ++ V+P
Sbjct: 547 LRIGCVVTDFCPLREPSAWVERTSRLLPDTIPFCQ---VDAHNVIP 589
>gi|74136505|ref|NP_001028149.1| DNA photolyase [Monodelphis domestica]
gi|682750|dbj|BAA06700.1| photolyase [Monodelphis domestica]
Length = 470
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 50/60 (83%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+LEV++ ++ +V +F EEA+VRRELADNFC+YNKNYDK+EGA+DWA+ TL H
Sbjct: 282 VQRAILEVQKHRSRYPDSVANFVEEAVVRRELADNFCFYNKNYDKLEGAYDWAQTTLRLH 341
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C+KL+I FH L+G ++LP FV+ H +G +V DF PL H W ++ L
Sbjct: 91 GLEEVAEECEKLHIPFHLLLGLPKDVLPAFVQAHSIGGIVTDFSPLLHHTQWVKDVQDGL 150
Query: 65 PKDVPLIQ 72
PK VP +Q
Sbjct: 151 PKQVPFVQ 158
>gi|340719305|ref|XP_003398095.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 2 [Bombus
terrestris]
Length = 480
Score = 85.1 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +LE+R + K+V+SF EEAI+RREL+DNFC+YN+ YD VEGA+ WA KTLN H
Sbjct: 287 VQRCILEIREYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYDLVEGAYPWAIKTLNKH 346
Query: 131 R 131
R
Sbjct: 347 R 347
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 50/68 (73%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL E+ ++CK+LN+ FH L G +E + +FV+ + +GAV++DF PL+ M W D ++K+L
Sbjct: 96 GLMEIEKECKQLNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMSWIDNVQKNL 155
Query: 65 PKDVPLIQ 72
P+DVP+ Q
Sbjct: 156 PEDVPIYQ 163
>gi|327284572|ref|XP_003227011.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Anolis
carolinensis]
Length = 535
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 50/60 (83%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+LEVR+ + ++V++F EEA++RRELADNFC+YN NYDKVEGA++WAK TL H
Sbjct: 344 VQRAILEVRKHRTRCRESVEAFIEEALIRRELADNFCFYNPNYDKVEGAYEWAKTTLKLH 403
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLKEV E+C++L+I FH LIG A + LP FV KH + VV DF PLR M W +++ L
Sbjct: 153 GLKEVAEECQELSIPFHLLIGFAKDTLPPFVAKHNIAGVVTDFAPLRVPMQWVQEVQERL 212
Query: 65 PKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKV 116
P DVP +Q ++ V+P + +RR++ D C + + V
Sbjct: 213 PPDVPFVQ---VDAHNVVPCWVASEKQEYGARTIRRKIHDRLCEFLTGFPPV 261
>gi|357613630|gb|EHJ68626.1| DNA photolyase [Danaus plexippus]
Length = 487
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL++V DC KLNI FH L G E+LPQ+V H++GAVV DF PLR +GW + KK L
Sbjct: 95 GLEKVAADCDKLNISFHLLEGNGAEVLPQWVIDHRIGAVVCDFNPLRVPLGWVEGAKKKL 154
Query: 65 PKDVPLIQRAVLEVRRVLP 83
KDVPLIQ ++ V+P
Sbjct: 155 KKDVPLIQ---VDAHNVVP 170
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 48/60 (80%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR L V+ K++++V+S+ EEAIVRRELADNFC+Y ++YD ++GA WA+KTL+DHR
Sbjct: 287 QRVALCVKEYKTKYTESVNSYLEEAIVRRELADNFCFYCEHYDSIKGASQWAQKTLDDHR 346
>gi|195401525|ref|XP_002059363.1| GJ17708 [Drosophila virilis]
gi|194142369|gb|EDW58775.1| GJ17708 [Drosophila virilis]
Length = 530
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR +LEV+R H + D+FCEEAIVRRELADNFCYYN++YD ++G DWA +TL HR
Sbjct: 337 QRCILEVQRYSAMHKASADAFCEEAIVRRELADNFCYYNEHYDSLKGLHDWAYQTLQAHR 396
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C +LNI F L+G A E LP+FV +GAV+ DF PLR W + K L
Sbjct: 145 GLQEVEQQCHELNISFQLLLGPAAERLPEFVTAEDIGAVICDFAPLRLPRQWVADVVKAL 204
Query: 65 PKDVPLIQ 72
P VPL Q
Sbjct: 205 PGHVPLTQ 212
>gi|395519161|ref|XP_003763719.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Sarcophilus
harrisii]
Length = 533
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 50/60 (83%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+LEV++ ++ +V +F EEA+VRRELADNFC+YNKNYDK+EGA+DWA+ TL H
Sbjct: 345 VQRAILEVQKHRGRYPDSVANFVEEAVVRRELADNFCFYNKNYDKLEGAYDWAQTTLRLH 404
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C+KL I FH L+G ++LP FV+KH +G +V DF PL H W ++ L
Sbjct: 154 GLEEVAEECEKLCIPFHLLLGLPKDVLPPFVQKHSIGGIVTDFSPLVHHTQWVKDVQDAL 213
Query: 65 PKDVPLIQ 72
P+ VP +Q
Sbjct: 214 PRQVPFVQ 221
>gi|449268368|gb|EMC79236.1| Deoxyribodipyrimidine photo-lyase, partial [Columba livia]
Length = 436
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 49/60 (81%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA+LEV++ K+ ++VD F EEA+VRRELA+NFCYYN+NYD V+GA+DWA+ TL H
Sbjct: 234 TQRAILEVQKQRGKYKESVDVFVEEAVVRRELAENFCYYNENYDSVQGAYDWAQTTLKLH 293
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C +LNI FH L+G ++LP FV +H +G +V DF PLR W + +++ L
Sbjct: 43 GLQEVTEECAELNIPFHLLLGYPKDVLPAFVVEHGVGGLVTDFSPLRLPRQWVEDIRERL 102
Query: 65 PKDVPLIQ 72
P+DVP Q
Sbjct: 103 PEDVPFAQ 110
>gi|340719303|ref|XP_003398094.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 1 [Bombus
terrestris]
Length = 494
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +LE+R + K+V+SF EEAI+RREL+DNFC+YN+ YD VEGA+ WA KTLN H
Sbjct: 301 VQRCILEIREYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYDLVEGAYPWAIKTLNKH 360
Query: 131 R 131
R
Sbjct: 361 R 361
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL E+ ++CK+LN+ FH L G +E + +FV+ + +GAV++DF PL+ M W D ++K+L
Sbjct: 110 GLMEIEKECKQLNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMSWIDNVQKNL 169
Query: 65 PKDVPLIQ 72
P+DVP+ Q
Sbjct: 170 PEDVPIYQ 177
>gi|195431012|ref|XP_002063542.1| GK19412 [Drosophila willistoni]
gi|194159627|gb|EDW74528.1| GK19412 [Drosophila willistoni]
Length = 534
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VLEV+R +H + ++FCEE IVRRELADNFCYYN+NYD ++G WA ++L+ HR
Sbjct: 340 QRCVLEVKRYAKQHKASTEAFCEETIVRRELADNFCYYNENYDSLKGVTSWAYQSLDAHR 399
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLKEV ++C+ LNI FH L+G A E LP+FV + +GAV+ DF PLR W + + K L
Sbjct: 150 GLKEVEKECRDLNIGFHLLLGPAREELPKFVRDNDIGAVICDFAPLRVPRQWVEDVTKGL 209
Query: 65 PKDVPLIQ 72
PKDVP Q
Sbjct: 210 PKDVPFTQ 217
>gi|9631430|ref|NP_048306.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
domestica GB:D31902 [Melanoplus sanguinipes
entomopoxvirus]
gi|4049783|gb|AAC97743.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
domestica GB:D31902 [Melanoplus sanguinipes
entomopoxvirus]
Length = 466
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 47/60 (78%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR +LE+ + + K+V+ FCEEAI+R+EL DNFCYYN+NYD + GA +WA KTLN+H+
Sbjct: 278 QRIILEINKYKKLYPKSVEVFCEEAIIRKELCDNFCYYNENYDNINGANNWAIKTLNEHK 337
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 44/64 (68%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
G+K++ E+CK LNI FH LIG + ++LP+F++K+ +G +++DF P++ W + L +
Sbjct: 89 GVKQMEEECKNLNIHFHLLIGISVDVLPKFIKKYNIGVLIVDFYPIKIFNNWVNQLISKI 148
Query: 65 PKDV 68
DV
Sbjct: 149 NIDV 152
>gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura]
gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VLEV+R +H + D++CEEAIVRRELADNFCYYN+NYD ++G WA ++L HR
Sbjct: 348 QRCVLEVQRYRSQHKASADAYCEEAIVRRELADNFCYYNENYDSLKGLSPWAYQSLEAHR 407
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E C++L I FH L+G A + LP+FV +GAVV DF PLR W + + K L
Sbjct: 155 GLQEVEEQCRELGIPFHLLLGPAVDRLPEFVRSKDVGAVVCDFAPLRVPRKWVEDVAKAL 214
Query: 65 PKDVPLIQ 72
PK+VPL Q
Sbjct: 215 PKNVPLTQ 222
>gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis]
gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis]
Length = 540
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VLEV+R +H + D++CEEAIVRRELADNFCYYN+NYD ++G WA ++L HR
Sbjct: 348 QRCVLEVQRYRSQHKASADAYCEEAIVRRELADNFCYYNENYDSLKGLSPWAYQSLEAHR 407
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E C+ L I FH L+G A + LP+FV +GAVV DF PLR W + + K L
Sbjct: 155 GLQEVEEQCRDLGIPFHLLLGPAVDRLPEFVRSKDVGAVVCDFAPLRVPRKWVEDVAKAL 214
Query: 65 PKDVPLIQ 72
PK+VPL Q
Sbjct: 215 PKNVPLTQ 222
>gi|464378|sp|P34205.1|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus]
Length = 556
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++CK L+I+FH L G + LP FVEK K GAVV DF PLR + W +T+KK L
Sbjct: 164 GLQEVAKECKSLDIQFHLLSGEPGQNLPSFVEKWKFGAVVTDFNPLRIPLQWIETVKKHL 223
Query: 65 PKDVPLIQ 72
P DVP IQ
Sbjct: 224 PADVPFIQ 231
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR V +V+R S++V SF EE +VRRELADNFC+YN +YD + GA+DWAKKTL DH
Sbjct: 356 QRVVKQVKRE-KNASESVASFIEELVVRRELADNFCFYNPSYDNISGAYDWAKKTLQDH 413
>gi|350410392|ref|XP_003489031.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 1 [Bombus
impatiens]
Length = 494
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 48/61 (78%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +LE++ + K+V+SF EEAI+RREL+DNFC+YN+ YD VEGA+ WA KTLN H
Sbjct: 301 VQRCILEIQEYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYDLVEGAYPWAIKTLNKH 360
Query: 131 R 131
R
Sbjct: 361 R 361
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL E+ E+CK+LN+ FH L G +E + +FV+ + +GAV++DF PL+ M W D ++K+L
Sbjct: 110 GLMEIEEECKQLNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMLWIDNVQKNL 169
Query: 65 PKDVPLIQ 72
P+D+P+ Q
Sbjct: 170 PEDIPIYQ 177
>gi|350410395|ref|XP_003489032.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 2 [Bombus
impatiens]
Length = 480
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 48/61 (78%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +LE++ + K+V+SF EEAI+RREL+DNFC+YN+ YD VEGA+ WA KTLN H
Sbjct: 287 VQRCILEIQEYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYDLVEGAYPWAIKTLNKH 346
Query: 131 R 131
R
Sbjct: 347 R 347
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL E+ E+CK+LN+ FH L G +E + +FV+ + +GAV++DF PL+ M W D ++K+L
Sbjct: 96 GLMEIEEECKQLNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMLWIDNVQKNL 155
Query: 65 PKDVPLIQ 72
P+D+P+ Q
Sbjct: 156 PEDIPIYQ 163
>gi|340384751|ref|XP_003390874.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 462
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 47/61 (77%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+L+V+ KHS++V ++ EEA+VRRELADNFCYYN +YD + GA WA+ TL H
Sbjct: 296 VQRAILKVKSYSSKHSESVSAYIEEAVVRRELADNFCYYNPHYDSISGAAQWAQDTLKAH 355
Query: 131 R 131
+
Sbjct: 356 K 356
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++ KL I FH L+G A LP F+ K + VV DF PLR +GW +L
Sbjct: 104 GLQEVEKELLKLKIPFHLLLGKAQSCLPPFIAKESVSVVVCDFSPLRVSLGWVKETGAEL 163
Query: 65 PK-DVPLIQ 72
K VPL+Q
Sbjct: 164 DKIKVPLVQ 172
>gi|326925994|ref|XP_003209191.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Meleagris
gallopavo]
Length = 503
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA+LEV++ + ++VD+F EEA+VRRELA+NFCYYN+NYD V GA+DWA+ TL H
Sbjct: 315 TQRAILEVQKHRCAYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGAYDWAQSTLKLH 374
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C +L+I FH L+G ++LP FV +H +G +V DF PLR W + +K+ L
Sbjct: 124 GLREVAEECAELDIPFHLLLGCPKDVLPSFVVEHSVGGLVTDFCPLRVPRQWVEEVKERL 183
Query: 65 PKDVPLIQ 72
P+DVP Q
Sbjct: 184 PEDVPFAQ 191
>gi|340380472|ref|XP_003388746.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 489
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 47/61 (77%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+L+V+ KHS++V ++ EEA+VRRELADNFCYYN +YD + GA WA+ TL H
Sbjct: 296 VQRAILKVKSYSSKHSESVSAYIEEAVVRRELADNFCYYNPHYDSISGAAQWAQDTLKAH 355
Query: 131 R 131
+
Sbjct: 356 K 356
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++ KL I FH L+G A LP F+ K + VV DF PLR +GW +L
Sbjct: 104 GLQEVEKELLKLKIPFHLLLGKAQSCLPSFIAKESVSVVVCDFSPLRVPLGWVKETGAEL 163
Query: 65 PK-DVPLIQ 72
K VPL+Q
Sbjct: 164 DKIKVPLVQ 172
>gi|33415319|gb|AAQ18175.1| type II CPD DNA photolyase [Pityrogramma austroamericana]
Length = 546
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 70 LIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
L QR LE R++ H+KA+D+F EE ++RRELADNFCYY NYD ++GA++WA+ TL
Sbjct: 331 LAQRCALEGRKLRRSHTKAIDTFLEELVIRRELADNFCYYQPNYDSLQGAYEWARSTLLA 390
Query: 130 H 130
H
Sbjct: 391 H 391
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+ VH + L I F L G A E +P FVE+ +V+DF PLR W + + K +
Sbjct: 95 GLRVVHHNLSSLGIPFFLLRGKAEENIPAFVERCGASILVMDFSPLRIGRVWREGVCKAV 154
Query: 65 PKDVPLIQ 72
P V + +
Sbjct: 155 PSSVSVFE 162
>gi|348501075|ref|XP_003438096.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Oreochromis
niloticus]
Length = 511
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++C++LNI+FH L G ++LP FV GAVV DF P+RE + W + +KK L
Sbjct: 131 GLEEVAKECEQLNIQFHLLHGAPGKVLPGFVSNRSFGAVVTDFSPIREPLQWLEDVKKKL 190
Query: 65 PKDVPLIQ 72
PKD+P IQ
Sbjct: 191 PKDIPFIQ 198
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR +V+R S+++ +F EE +VRREL DNFC+YNK YD VEGA++WA+KTL DH
Sbjct: 323 QRVAWQVQRNGKNASQSIPAFIEELVVRRELTDNFCFYNKKYDSVEGAYEWAQKTLKDH 381
>gi|50752305|ref|XP_422729.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Gallus gallus]
Length = 499
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA+LEV++ + ++VD+F EEA+VRRELA+NFCYYN+NYD V GA+DWA+ TL H
Sbjct: 311 TQRAILEVQKHRRVYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGAYDWAQSTLKLH 370
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++C +L+I FH L+G ++LP FV +H +G +V DF PLR W + +K+ L
Sbjct: 120 GLREVAKECAELDIPFHVLLGCPKDVLPSFVVEHGVGGLVTDFCPLRVPRQWVEEVKERL 179
Query: 65 PKDVPLIQ 72
P+DVP Q
Sbjct: 180 PEDVPFAQ 187
>gi|195581344|ref|XP_002080494.1| GD10512 [Drosophila simulans]
gi|194192503|gb|EDX06079.1| GD10512 [Drosophila simulans]
Length = 555
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R +H + D+FCEEAIVRRELADNFC+YN++YD ++G WA +TL+ HR
Sbjct: 364 QRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKGLSSWAYQTLDAHR 423
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ L+I FH L+G A E LPQFV+ +GAVV DF PLR W + + K L
Sbjct: 171 GLQEVEQQCRALDIPFHLLMGPAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230
Query: 65 PKDVPLIQ 72
P+ VPL+Q
Sbjct: 231 PQTVPLVQ 238
>gi|195332255|ref|XP_002032814.1| GM20985 [Drosophila sechellia]
gi|194124784|gb|EDW46827.1| GM20985 [Drosophila sechellia]
Length = 555
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R +H + D+FCEEAIVRRELADNFC+YN++YD ++G WA +TL+ HR
Sbjct: 364 QRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKGLSSWAYQTLDAHR 423
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ L+I FH L+G A E LPQFV+ +GAVV DF PLR W + + K L
Sbjct: 171 GLQEVEQQCRALDIPFHLLMGPAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230
Query: 65 PKDVPLIQ 72
P+ VPL+Q
Sbjct: 231 PQTVPLVQ 238
>gi|24586396|ref|NP_523653.2| photorepair, isoform A [Drosophila melanogaster]
gi|7304148|gb|AAF59185.1| photorepair, isoform A [Drosophila melanogaster]
gi|19527513|gb|AAL89871.1| RE21178p [Drosophila melanogaster]
gi|220948232|gb|ACL86659.1| phr-PA [synthetic construct]
gi|220960434|gb|ACL92753.1| phr-PA [synthetic construct]
Length = 555
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R +H + D+FCEEAIVRRELADNFC+YN++YD ++G WA +TL+ HR
Sbjct: 364 QRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKGLSSWAYQTLDAHR 423
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ L+I FH L+G A E LPQFV+ +GAVV DF PLR W + + K L
Sbjct: 171 GLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230
Query: 65 PKDVPLIQ 72
PK VPL+Q
Sbjct: 231 PKSVPLVQ 238
>gi|1401030|dbj|BAA05042.1| photolyase [Drosophila melanogaster]
Length = 640
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R +H + D+FCEEAIVRRELADNFC+YN++YD ++G WA +TL+ HR
Sbjct: 449 QRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKGLSSWAYQTLDAHR 508
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ L+I FH L+G A E LPQFV+ +GAVV DF PLR W + + K L
Sbjct: 256 GLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 315
Query: 65 PKDVPLIQ 72
PK VPL+Q
Sbjct: 316 PKSVPLVQ 323
>gi|24586398|ref|NP_724613.1| photorepair, isoform B [Drosophila melanogaster]
gi|21627730|gb|AAM68868.1| photorepair, isoform B [Drosophila melanogaster]
Length = 535
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R +H + D+FCEEAIVRRELADNFC+YN++YD ++G WA +TL+ HR
Sbjct: 344 QRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKGLSSWAYQTLDAHR 403
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ L+I FH L+G A E LPQFV+ +GAVV DF PLR W + + K L
Sbjct: 151 GLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 210
Query: 65 PKDVPLIQ 72
PK VPL+Q
Sbjct: 211 PKSVPLVQ 218
>gi|33330687|gb|AAQ10672.1| type II CPD photolyase [Stellaria longipes]
Length = 499
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V ++VD+F EE IVRRELADNFCYY +YD ++GA+DWA+KTL DH
Sbjct: 284 QRCALEARQVRKLSPESVDTFLEELIVRRELADNFCYYQPHYDSIKGAWDWARKTLMDH 342
>gi|194757449|ref|XP_001960977.1| GF13637 [Drosophila ananassae]
gi|190622275|gb|EDV37799.1| GF13637 [Drosophila ananassae]
Length = 538
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R +H + ++FCEEAIVRRELADNFCYYN++YD ++G WA +TL+ HR
Sbjct: 345 QRCALEVQRFRGQHKASAEAFCEEAIVRRELADNFCYYNEHYDSLKGLSSWAYQTLDAHR 404
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C++L+I FH L+G A + +P+FV+ K+GAV+ DF PLR W D + K L
Sbjct: 152 GLQEVEQQCRELDIPFHLLLGPAVDRIPEFVKSRKVGAVICDFAPLRVPRKWVDDVVKAL 211
Query: 65 PKDVPLIQ 72
PK VPL+Q
Sbjct: 212 PKTVPLVQ 219
>gi|194863692|ref|XP_001970566.1| GG23307 [Drosophila erecta]
gi|190662433|gb|EDV59625.1| GG23307 [Drosophila erecta]
Length = 554
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R +H + D+FCEEAIVRRELADNFC+YN++YD ++G WA +TL+ HR
Sbjct: 364 QRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKGLSTWAYQTLDAHR 423
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ L+I FH L+G A E LP+FV+ +GAVV DF PLR W + + K L
Sbjct: 171 GLQEVEQQCRALDIPFHLLMGPAVEKLPEFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 230
Query: 65 PKDVPLIQ 72
PK VPL+Q
Sbjct: 231 PKSVPLVQ 238
>gi|41055064|ref|NP_957358.1| uncharacterized protein LOC394039 [Danio rerio]
gi|32451837|gb|AAH54710.1| Zgc:66475 [Danio rerio]
Length = 516
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR V++V+R S++V SF EE +VRRELADNFC+YN+NYD + GA+DWAKKTL +H
Sbjct: 319 QRVVMQVKRK-KNASESVASFIEEIVVRRELADNFCFYNQNYDNISGAYDWAKKTLQEH 376
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++CK L+IEFH L G LP FV+ +GAVV DF PLR + W DT+KK L
Sbjct: 127 GLQEVVKECKSLDIEFHLLSGEPVHNLPAFVKSWNIGAVVTDFNPLRISLQWIDTVKKHL 186
Query: 65 PKDVPLIQ 72
P D+P IQ
Sbjct: 187 PSDIPFIQ 194
>gi|340384943|ref|XP_003390970.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 319
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +L+V+ KHS++V ++ EEA+VRRELADNFCYYN +YD + GA WA+ TL H
Sbjct: 126 VQRTILKVKSYSSKHSESVSAYIEEAVVRRELADNFCYYNPHYDSISGAAQWAQDTLKAH 185
Query: 131 R 131
+
Sbjct: 186 K 186
>gi|383862709|ref|XP_003706826.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Megachile
rotundata]
Length = 477
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +LE+ H K+V+SF EEAI+RREL+DNFC+YNK YD +EGA+ W +TL+ H
Sbjct: 286 VQRCILEITEYKKIHPKSVESFMEEAIIRRELSDNFCFYNKKYDLIEGAYPWTIETLDKH 345
Query: 131 R 131
R
Sbjct: 346 R 346
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL +V E+CK LNI FH L G + + +FV+ H++GAV+ DF PLR M W + L+KDL
Sbjct: 95 GLMKVEEECKNLNINFHLLNGEPNMSILKFVKAHRMGAVIADFNPLRLPMSWINDLQKDL 154
Query: 65 PKDVPLIQ 72
P+ +P Q
Sbjct: 155 PEYIPFCQ 162
>gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex]
Length = 523
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 48/60 (80%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR +LEV+ KH+K+VD++ EE I+RREL+DNFC+YN NYD ++GA +WA++TL H+
Sbjct: 327 QRCILEVKGYKTKHAKSVDAYMEETIIRRELSDNFCFYNTNYDNLKGAANWAQETLEVHK 386
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV +C+KL IEFH L G + +P + K KL AVV DF PLR + W D +K+ +
Sbjct: 135 GLEEVETECQKLKIEFHLLKGESQICVPDLITKLKLDAVVADFSPLRVPLSWIDKVKESI 194
Query: 65 PKDVPLIQ 72
PK+VP Q
Sbjct: 195 PKNVPFCQ 202
>gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae]
Length = 528
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/61 (60%), Positives = 44/61 (72%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRAVL V H +VD F EEA+VRRELADNFC +N+NYD VEGA WA+ TL+ H
Sbjct: 342 VQRAVLVVCSFRRTHGVSVDVFVEEAVVRRELADNFCLHNRNYDSVEGASSWARGTLDAH 401
Query: 131 R 131
R
Sbjct: 402 R 402
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 34/56 (60%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTL 60
GL+EV + +L I FH L G A E LP+FVE HK+G VV DF PLR W L
Sbjct: 151 GLREVETEALQLGIAFHVLKGSAPEALPRFVEHHKIGCVVADFNPLRVVREWCSLL 206
>gi|195474508|ref|XP_002089533.1| GE19152 [Drosophila yakuba]
gi|194175634|gb|EDW89245.1| GE19152 [Drosophila yakuba]
Length = 535
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LEV+R ++ + DSFCEEAIVRRELADNFC+YN YD ++G WA +TL+ HR
Sbjct: 344 QRCALEVQRFRGQYKASADSFCEEAIVRRELADNFCFYNDQYDSLKGLSSWAYQTLDAHR 403
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ L+I FH L+G A E LP+FV+ +GAV+ DF PLR W + + K L
Sbjct: 151 GLQEVEQQCRALDIPFHLLMGPAVEKLPEFVKSKDIGAVICDFAPLRLPRQWVENVSKAL 210
Query: 65 PKDVPLIQ 72
PK VP++Q
Sbjct: 211 PKSVPMVQ 218
>gi|380029742|ref|XP_003698524.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Apis florea]
Length = 480
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 48/61 (78%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +LE++ + K+V+SF EEAI+R+EL+DNFC+YN+ YD +EGA+ WA +TLN H
Sbjct: 287 VQRCILEIKEYKKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDLIEGAYPWAIETLNKH 346
Query: 131 R 131
R
Sbjct: 347 R 347
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 48/68 (70%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+E+ +CKKLNI FH L G + + +F++ + +GA++ DF PL+ M W D +KK+L
Sbjct: 96 GLEEIETECKKLNINFHLLHGEPNISILKFIKMYNMGAIITDFYPLKLPMLWIDNVKKNL 155
Query: 65 PKDVPLIQ 72
P+DVP+ Q
Sbjct: 156 PEDVPICQ 163
>gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera]
Length = 480
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 48/61 (78%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR +LE++ + K+V+SF EEAI+R+EL+DNFC+YN+ YD +EGA+ WA +TLN H
Sbjct: 287 VQRCILEIKEYKKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDLIEGAYPWAIETLNKH 346
Query: 131 R 131
R
Sbjct: 347 R 347
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 49/68 (72%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+E+ ++CKKLNI FH L G + + +F++ + +GA++ DF PL+ M W D +KK+L
Sbjct: 96 GLEEIEKECKKLNINFHLLHGEPNINILKFIKIYNMGAIITDFYPLKLPMLWIDNVKKNL 155
Query: 65 PKDVPLIQ 72
PKD+P+ Q
Sbjct: 156 PKDIPICQ 163
>gi|30682738|ref|NP_849651.1| photolyase 1 [Arabidopsis thaliana]
gi|75201504|sp|Q9SB00.1|PHR_ARATH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName:
Full=AtCPDII; AltName: Full=DNA photolyase; AltName:
Full=Photoreactivating enzyme 1; AltName: Full=Protein
UV RESISTANCE 2
gi|4239819|dbj|BAA74701.1| PHR1 [Arabidopsis thaliana]
gi|332190750|gb|AEE28871.1| photolyase 1 [Arabidopsis thaliana]
Length = 496
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V +AVD+F EE IVRREL+DNFCYY +YD ++GA++WA+K+L DH
Sbjct: 284 QRCALEARKVRSTSPQAVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDH 342
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLRE 52
GL+++H L I F L G A E +P F+ + +V DF PLRE
Sbjct: 84 GLRQLHHQIDSLQIPFFLLQGDAKETIPNFLTECGASHLVTDFSPLRE 131
>gi|18391386|ref|NP_563906.1| photolyase 1 [Arabidopsis thaliana]
gi|14334576|gb|AAK59467.1| unknown protein [Arabidopsis thaliana]
gi|21280945|gb|AAM44957.1| unknown protein [Arabidopsis thaliana]
gi|332190751|gb|AEE28872.1| photolyase 1 [Arabidopsis thaliana]
Length = 490
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V +AVD+F EE IVRREL+DNFCYY +YD ++GA++WA+K+L DH
Sbjct: 284 QRCALEARKVRSTSPQAVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDH 342
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLRE 52
GL+++H L I F L G A E +P F+ + +V DF PLRE
Sbjct: 84 GLRQLHHQIDSLQIPFFLLQGDAKETIPNFLTECGASHLVTDFSPLRE 131
>gi|8778649|gb|AAF79657.1|AC025416_31 F5O11.9 [Arabidopsis thaliana]
Length = 505
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V +AVD+F EE IVRREL+DNFCYY +YD ++GA++WA+K+L DH
Sbjct: 284 QRCALEARKVRSTSPQAVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDH 342
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLRE 52
GL+++H L I F L G A E +P F+ + +V DF PLRE
Sbjct: 84 GLRQLHHQIDSLQIPFFLLQGDAKETIPNFLTECGASHLVTDFSPLRE 131
>gi|156340369|ref|XP_001620432.1| hypothetical protein NEMVEDRAFT_v1g223118 [Nematostella vectensis]
gi|156205346|gb|EDO28332.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 70 LIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYY-NKNYDKVEGAFDWAKKTLN 128
L QRA+L VR K ++V+SF EE I+RREL+DNFCYY N+ YD +EG +WA+KTLN
Sbjct: 219 LPQRAILRVRDFRSKFRESVESFIEECIIRRELSDNFCYYNNEKYDSIEGTNEWARKTLN 278
Query: 129 DH 130
DH
Sbjct: 279 DH 280
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 14 KKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDLPKDVPLIQ 72
K+L I FH L+G ++LP+FV+ +G +V+DF PLR W + + K +PKDVP+ Q
Sbjct: 83 KELEISFHLLLGDPGKVLPEFVKTAGIGGIVVDFCPLRLPTQWVNDVVKAVPKDVPICQ 141
>gi|307110754|gb|EFN58989.1| CPD photolyase [Chlorella variabilis]
Length = 444
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QRA +E R H +V+ F EE IVRRELADN+C+Y NYD ++ A+DWA++TLNDHR
Sbjct: 249 QRAAVEAARNKAVHKASVEGFLEELIVRRELADNYCFYVPNYDSLDAAYDWARQTLNDHR 308
>gi|30421116|gb|AAP31406.1| CPD photolyase [Spinacia oleracea]
gi|30421159|gb|AAP31407.1| CPD photolyase [Spinacia oleracea]
Length = 491
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR E R V +AVD+F EE IVRRELADNFCYY NYD + GA++WA+KTL DH
Sbjct: 282 QRCAFEARNVRKVAPEAVDAFTEELIVRRELADNFCYYQPNYDSLMGAWEWARKTLMDH 340
>gi|297849606|ref|XP_002892684.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
lyrata]
gi|297338526|gb|EFH68943.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V +AVD+F EE IVRREL+DNFCYY +YD ++GA++WA+K+L DH
Sbjct: 284 QRCALEARKVRNTSPQAVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDH 342
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLRE 52
GL+++H L I F L G A E +P+F+ + +V DF PLRE
Sbjct: 84 GLRQLHHQIDSLQIPFFLLQGDAKETIPKFIAECGASHLVTDFSPLRE 131
>gi|224124936|ref|XP_002329850.1| predicted protein [Populus trichocarpa]
gi|222871087|gb|EEF08218.1| predicted protein [Populus trichocarpa]
Length = 503
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V ++ D+F EE IVRRELADNFC+Y NYD + GA++WA+KTL DH
Sbjct: 289 QRCALEARKVRNLSPQSADAFLEELIVRRELADNFCFYQPNYDSIHGAWEWARKTLADH 347
>gi|390345301|ref|XP_003726308.1| PREDICTED: LOW QUALITY PROTEIN: deoxyribodipyrimidine
photo-lyase-like [Strongylocentrotus purpuratus]
Length = 501
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA L VR + S++V +F EE+I+RREL+DNFC+YN YD +EG DWAKKTL DH
Sbjct: 313 QRAALIVRLYRSRFSESVAAFIEESIIRRELSDNFCFYNDKYDSIEGTNDWAKKTLKDH 371
>gi|226359412|gb|ACO51512.1| photolyase [Strongylocentrotus franciscanus]
Length = 367
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA L VR + S++V + EE+I RREL+DNFC+YN NYD +EG DWAKKTL DH
Sbjct: 225 QRAALIVRLYRSRFSESVAGYIEESITRRELSDNFCFYNDNYDSIEGTNDWAKKTLKDH 283
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLKEV ++ L+I FH LIG A ++LP F+ H LG VV DF PLR W +K++L
Sbjct: 33 GLKEVSQELHLLDIPFHLLIGYAKDVLPGFINDHGLGGVVTDFSPLRTSRQWIKDVKEEL 92
Query: 65 PKDVPLIQ 72
PK++P Q
Sbjct: 93 PKNIPFCQ 100
>gi|688103|gb|AAB32328.1| photorepair gene [Drosophila melanogaster]
Length = 536
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C+ L+I FH L+G A E LPQFV+ +GAVV DF PLR W + + K L
Sbjct: 151 GLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQWVEDVGKAL 210
Query: 65 PKDVPLIQ 72
PK VPL+Q
Sbjct: 211 PKSVPLVQ 218
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 72 QRAVLEVRRVLP-KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LEV+R +H + D+FCEE IVRRELADNFC+YN++YD ++G WA +TL+ H
Sbjct: 344 QRCALEVQRFRGGQHKASADAFCEETIVRRELADNFCFYNEHYDSLKGLSSWAYQTLDAH 403
Query: 131 R 131
R
Sbjct: 404 R 404
>gi|293652305|gb|ADE60791.1| CPD photolyase [Trichoplusia ni]
Length = 233
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 49/61 (80%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR L V+ K++++V++F EEAIVRRELADNFC+Y ++YD ++GA WA+KTL+DH
Sbjct: 118 VQRVALSVQEHKSKYTESVNAFLEEAIVRRELADNFCFYCEHYDSIKGASQWAQKTLDDH 177
Query: 131 R 131
R
Sbjct: 178 R 178
>gi|156392837|ref|XP_001636254.1| predicted protein [Nematostella vectensis]
gi|156223355|gb|EDO44191.1| predicted protein [Nematostella vectensis]
Length = 382
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYY-NKNYDKVEGAFDWAKKTLNDH 130
QRA+L VR K ++V+SF EE I+RREL+DNFCYY N+ YD +EG +WA+KTLNDH
Sbjct: 196 QRAILRVRDFRSKFRESVESFIEECIIRRELSDNFCYYNNEKYDSIEGTNEWARKTLNDH 255
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++ K+L I FH L+G ++LP+FV+ +G +V+DF PLR W + + K +
Sbjct: 4 GLQEVEKELKELEISFHLLLGDPGKVLPEFVKSAGIGGIVVDFCPLRLPTQWVNDVVKAV 63
Query: 65 PKDVPLIQ 72
PKDVP+ Q
Sbjct: 64 PKDVPVCQ 71
>gi|397690418|ref|YP_006527672.1| deoxyribodipyrimidine photolyase [Melioribacter roseus P3M]
gi|395811910|gb|AFN74659.1| deoxyribodipyrimidine photolyase [Melioribacter roseus P3M]
Length = 445
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LE+ R +HSK+ +SF EE IVR+EL+DNFCYYNK YD EG +WA+KTLN+HR
Sbjct: 261 QRIALEILRRT-EHSKSRESFLEELIVRKELSDNFCYYNKKYDSFEGFPEWAQKTLNEHR 319
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGW 56
GLK+V + KLNI F L G +P FV++ ++ DF PLR W
Sbjct: 74 GLKQVEKKLSKLNIGFKLLSGNPAVTIPAFVKESGCSELITDFNPLRITRKW 125
>gi|302780533|ref|XP_002972041.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
gi|300160340|gb|EFJ26958.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
Length = 510
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR EVR+ H ++VDSF EE I+RREL+DNFCYY NYD ++GA++WA+ +L +H
Sbjct: 314 QRCAFEVRKARKLHMQSVDSFLEELIIRRELSDNFCYYQPNYDNIQGAWEWARNSLLEH 372
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+ V ++ +KL I F L G + +P FVE +V+DF PLR W + L
Sbjct: 117 GLRVVEKNLEKLGIAFFLLRGRPEDTIPAFVEACNASILVLDFSPLRIGRTWRTGVVSRL 176
Query: 65 PKDV 68
D
Sbjct: 177 GADT 180
>gi|302781626|ref|XP_002972587.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
gi|300160054|gb|EFJ26673.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
Length = 510
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR EVR+ H ++VDSF EE I+RREL+DNFCYY NYD ++GA++WA+ +L +H
Sbjct: 314 QRCAFEVRKARKLHMQSVDSFLEELIIRRELSDNFCYYQPNYDNIQGAWEWARNSLLEH 372
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+ V ++ KL I F L G + +P FVE +V+DF LR W + L
Sbjct: 117 GLRVVEKNLDKLGIAFFLLRGRPEDTIPSFVEACNASILVLDFSSLRIGRTWRTGVVSRL 176
Query: 65 PKDV 68
D
Sbjct: 177 GADT 180
>gi|1617219|emb|CAA67683.1| CPD photolyase [Arabidopsis thaliana]
gi|2984707|gb|AAC08008.1| type II CPD photolyase PHR1 [Arabidopsis thaliana]
Length = 496
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V +AVD F EE IVRREL+DNFCYY +YD ++GA++WA+K+L DH
Sbjct: 284 QRCALEARKVRSTSPQAVDIFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDH 342
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLRE 52
GL+++H L I F L G A E +P F+ + +V DF PLRE
Sbjct: 84 GLRQLHHQIDSLQIPFFLLQGDAKETIPNFLTECGASHLVTDFSPLRE 131
>gi|294892053|ref|XP_002773871.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
gi|239879075|gb|EER05687.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
Length = 480
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 4/61 (6%)
Query: 72 QRAVLEVRRV--LPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
QRAV+EV + +PK + D+F EEA +RRELADNFCYYN+NYD+ EG +WA+KTL D
Sbjct: 254 QRAVMEVAKAKSIPKPDR--DAFIEEAFIRRELADNFCYYNENYDRFEGFHNWAQKTLQD 311
Query: 130 H 130
H
Sbjct: 312 H 312
>gi|256077044|ref|XP_002574818.1| DNA photolyase [Schistosoma mansoni]
gi|350646465|emb|CCD58864.1| DNA photolyase, putative [Schistosoma mansoni]
Length = 533
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA++EV+ K+ +VD+F EEA +RREL+DNFCYYN YD +EGA+ WA+ TL H
Sbjct: 347 QRAIMEVKLWRHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSIEGAWKWAQDTLAQH 405
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 33/109 (30%)
Query: 5 GLKEVHEDCKKLNIEFHFLIG-------------GAHEILPQFVEKH------------- 38
GLKEV ++C++L I FH G LP+ V +
Sbjct: 125 GLKEVEKECRELCIPFHITSAITNSSSNNQPVKTGVKRKLPESVNDYCHADTVAQSVLSL 184
Query: 39 ----KLGAVVIDFMPLREHMGWADTLKKDLPKDVPLIQRAVLEVRRVLP 83
+ ++ DF PLRE W L + LP+++P Q ++ V+P
Sbjct: 185 IQSVNISCIITDFFPLREPTAWIKQLAELLPENIPFCQ---VDAHNVVP 230
>gi|195119354|ref|XP_002004196.1| GI19782 [Drosophila mojavensis]
gi|193909264|gb|EDW08131.1| GI19782 [Drosophila mojavensis]
Length = 538
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + C++LN+ FH L+G A E LPQFV+ K+GAV+ DF PLR W + + K L
Sbjct: 153 GLQEVEQQCRELNVSFHLLLGPAVERLPQFVKDEKIGAVICDFAPLRLPRQWVEDVVKAL 212
Query: 65 PKDVPLIQ 72
P VPL Q
Sbjct: 213 PAHVPLTQ 220
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VLEV R + ++V+++ EEAIVRRELADNFCYYN++YD ++G + WA ++L HR
Sbjct: 345 QRCVLEVGRYKTIYKESVEAYFEEAIVRRELADNFCYYNEHYDSLKGLYSWAYESLQAHR 404
>gi|293652309|gb|ADE60793.1| CPD photolyase [Chrysodeixis chalcites]
Length = 237
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 49/61 (80%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR L V+ K++++V++F EEAIVRRELADNFC+Y ++YD ++GA WA+KTL+DH
Sbjct: 122 VQRVALCVQEHKSKYTESVNAFLEEAIVRRELADNFCFYCEHYDSIKGASQWAQKTLDDH 181
Query: 131 R 131
R
Sbjct: 182 R 182
>gi|443696862|gb|ELT97477.1| hypothetical protein CAPTEDRAFT_152478 [Capitella teleta]
Length = 504
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++CK L I FH +G A + LPQFVE H +GA+V DF PLR W L K L
Sbjct: 121 GLQEVEKECKSLRISFHLHLGHATDHLPQFVEDHNIGAIVTDFCPLRVPTKWVTDLVKSL 180
Query: 65 PKDVPLIQ 72
P ++PL Q
Sbjct: 181 PDEIPLFQ 188
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QRA+L V + K+SK+V ++ EE ++RREL DN+C+Y NYD ++GA++WA+ TL HR
Sbjct: 313 QRAMLMVNEMKTKYSKSVAAYIEEGVIRRELCDNYCFYQPNYDNIDGAYEWARLTLKAHR 372
>gi|326507630|dbj|BAK03208.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 507
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE I+RRELADNFCYY +YD V GA++WA+KTL DH
Sbjct: 297 QRCALEAKKRRHLSPKSVDAFLEELIIRRELADNFCYYQPHYDSVAGAWEWARKTLKDH 355
>gi|194702896|gb|ACF85532.1| unknown [Zea mays]
gi|414868226|tpg|DAA46783.1| TPA: hypothetical protein ZEAMMB73_845202 [Zea mays]
gi|414868227|tpg|DAA46784.1| TPA: hypothetical protein ZEAMMB73_845202 [Zea mays]
Length = 376
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE I+RRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 286 QRCALEAKKRRHLSPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDH 344
>gi|226479206|emb|CAX73098.1| photorepair [Schistosoma japonicum]
Length = 530
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA++EV+ K+ +VD+F EEA +RREL+DNFCYYN YD +EGA+ WA+ TL H
Sbjct: 344 QRALIEVKLWRHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSMEGAWKWAQDTLTQH 402
>gi|81157959|dbj|BAE48230.1| CPD photolyase [Chlorella pyrenoidosa]
Length = 448
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QRA +E + H +V+ F EE +VRREL+DN+C+Y +NYD ++ A+DWA++TLNDHR
Sbjct: 249 QRAAIEAAKHKSTHKASVEGFLEELVVRRELSDNYCHYVENYDSLDAAYDWARQTLNDHR 308
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+ + + LNI F L G E +P+ V+ +V D+ PLR W + + L
Sbjct: 52 GLQLIQPKLEALNIPFFLLKGDPSETIPKLVQDTGASLLVTDYAPLRLGRQWRQAVAEQL 111
Query: 65 PKDVPL 70
+VP
Sbjct: 112 --EVPF 115
>gi|195647124|gb|ACG43030.1| hypothetical protein [Zea mays]
Length = 376
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE I+RRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 286 QRCALEAKKRRHLSPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDH 344
>gi|357145905|ref|XP_003573808.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Brachypodium
distachyon]
Length = 503
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE I+RRELADNFCYY +YD + GA++WA+KTL DH
Sbjct: 295 QRCALEAKKCRHLSPKSVDAFLEELIIRRELADNFCYYQPHYDSLAGAWEWARKTLKDH 353
>gi|212275870|ref|NP_001130580.1| uncharacterized protein LOC100191679 [Zea mays]
gi|194689542|gb|ACF78855.1| unknown [Zea mays]
gi|414868228|tpg|DAA46785.1| TPA: type II CPD DNA photolyase [Zea mays]
Length = 493
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE I+RRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 286 QRCALEAKKRRHLSPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDH 344
>gi|364506185|pdb|3UMV|A Chain A, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
gi|364506186|pdb|3UMV|B Chain B, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
gi|312261184|dbj|BAC76449.2| CPD-photolyase [Oryza sativa Japonica Group]
Length = 506
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 296 QRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
>gi|75122626|sp|Q6F6A2.1|PHR_ORYSJ RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=OsCPDII; AltName:
Full=Photoreactivating enzyme
gi|49532671|dbj|BAD26607.1| CPD photolyase [Oryza sativa Japonica Group]
gi|70067250|dbj|BAE06248.1| CPD photolyase [Oryza sativa Japonica Group]
gi|78707888|gb|ABB46863.1| Deoxyribodipyrimidine photo-lyase, putative, expressed [Oryza
sativa Japonica Group]
gi|164455166|dbj|BAF97086.1| CPD photolyase [Oryza sativa]
Length = 506
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 296 QRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
>gi|164455170|dbj|BAF97088.1| CPD photolyase [Oryza barthii]
gi|164455178|dbj|BAF97092.1| CPD photolyase [Oryza barthii]
gi|164455184|dbj|BAF97095.1| CPD photolyase [Oryza glaberrima]
gi|164455186|dbj|BAF97096.1| CPD photolyase [Oryza glaberrima]
Length = 506
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 296 QRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
>gi|164455180|dbj|BAF97093.1| CPD photolyase [Oryza barthii]
Length = 506
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 296 QRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+ + D ++ F GG EI P V + +V DF PLR D + DL
Sbjct: 96 GLRRLAADAASRHLPFFLFTGGPAEI-PALVRRLGASTLVADFSPLRPVREALDAVVGDL 154
Query: 65 PKDVPLIQRAVLEVRRVLP 83
++ P + ++ V+P
Sbjct: 155 RREAPGVAVHQVDAHNVVP 173
>gi|449459676|ref|XP_004147572.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cucumis sativus]
gi|449517475|ref|XP_004165771.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cucumis sativus]
gi|13383259|dbj|BAB39480.1| CPD photolyase [Cucumis sativus]
gi|20387244|dbj|BAB91322.1| CPD photolyase [Cucumis sativus]
Length = 489
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R + + +AVD F EE IVRRELADN+CYY +YD + GA++WA+KTL DH
Sbjct: 280 QRCALEARSIRKLNPQAVDVFLEELIVRRELADNYCYYQPHYDSLLGAWEWARKTLMDH 338
>gi|9634828|ref|NP_039121.1| Photolyase [Fowlpox virus]
gi|7271656|gb|AAF44502.1|AF198100_149 ORF FPV158 Photolyase [Fowlpox virus]
gi|8926140|gb|AAF81696.1|AF246697_1 CPD-photolyase [Fowlpox virus]
Length = 464
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LEV + + + K V++F +E IVRREL+DNFCYYNK+YD ++ WA+KTL DH
Sbjct: 280 QRVALEVLKCIRESKKNVETFIDEIIVRRELSDNFCYYNKHYDSIQSTHSWARKTLEDH 338
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLKEV E+CK+L I F + G I+P V+K+++G ++ DF PLR L
Sbjct: 93 GLKEVAEECKRLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTVISL 152
Query: 65 PKDVPLIQ 72
P ++P IQ
Sbjct: 153 PDNIPFIQ 160
>gi|260783748|ref|XP_002586934.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
gi|229272065|gb|EEN42945.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
Length = 426
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLND 129
+QR +L V++ K+ ++VD++ EEAI+RREL+DNFC+YN + YD ++GA WA+KTL D
Sbjct: 251 VQRCILTVKKYRSKYKESVDAYIEEAIIRRELSDNFCFYNHDKYDSIKGASAWAQKTLKD 310
Query: 130 H 130
H
Sbjct: 311 H 311
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 30 ILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDLPKDVPLIQ 72
LP FV++ +G VV DF PLR + W L LP DVP +Q
Sbjct: 85 FLPGFVDEKNIGGVVTDFSPLRTPLKWVHDLAGKLPSDVPFVQ 127
>gi|255537109|ref|XP_002509621.1| DNA photolyase, putative [Ricinus communis]
gi|223549520|gb|EEF51008.1| DNA photolyase, putative [Ricinus communis]
Length = 489
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+ ++VDSF EE IVRRELADNFC+Y +YD ++GA++WA+ TL DH
Sbjct: 281 QRCALEARKAQKLCPQSVDSFLEELIVRRELADNFCFYQPHYDSLQGAWEWARNTLLDH 339
>gi|164455160|dbj|BAF97083.1| CPD photolyase [Oryza meridionalis]
gi|164455174|dbj|BAF97090.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K++D+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 296 QRCALEAKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
>gi|147862663|emb|CAN79335.1| hypothetical protein VITISV_026088 [Vitis vinifera]
Length = 514
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE +++ +AVD F EE IVRRELADNFC+Y Y+ ++GA++WA+KTL DH
Sbjct: 294 QRCALEAKKIQKNCPQAVDVFLEELIVRRELADNFCFYQPRYNSLQGAWEWARKTLMDH 352
>gi|164455176|dbj|BAF97091.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K++D+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 296 QRCALEAKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+ + D ++ F L GG EI P V + +V DF PLR D + DL
Sbjct: 96 GLRRLAADATARHLPFFLLTGGPAEI-PALVRRLGASTLVADFSPLRPVREALDAVVGDL 154
Query: 65 PKDVPLIQRAVLEVRRVLP 83
++ P + ++ V+P
Sbjct: 155 RREAPGVAVHQVDAHNVVP 173
>gi|253761750|ref|XP_002489250.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
gi|241947110|gb|EES20255.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
Length = 1445
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
++VD+F EE I+RRELADNFCYY NYD + GA++WA+KTL DH
Sbjct: 241 ESVDAFLEELIIRRELADNFCYYQPNYDSLAGAWEWARKTLMDH 284
>gi|167524661|ref|XP_001746666.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774936|gb|EDQ88562.1| predicted protein [Monosiga brevicollis MX1]
Length = 884
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 71 IQRAVLEVR-RVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
+QR VLE+R + K+++ V ++ EEA+VRREL+DNFC+YN YD VEGA WA++TL+
Sbjct: 653 VQRVVLELRSKQRGKYAEGVKAYIEEAVVRRELSDNFCFYNHRYDSVEGASAWAQETLDV 712
Query: 130 H 130
H
Sbjct: 713 H 713
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWA-DTLKKD 63
GL+ V +K +I FH L G A ++LP+F E+ + AVV D PLR M W +T K
Sbjct: 462 GLQVVETHLRKKHIPFHLLTGYAKDVLPKFAEEQEACAVVCDMSPLRVPMAWVKETGSKL 521
Query: 64 LPKDVPLIQ 72
+VPL Q
Sbjct: 522 KDMNVPLYQ 530
>gi|351727839|ref|NP_001238710.1| CPD photolyase [Glycine max]
gi|169159213|dbj|BAG12106.1| CPD photolyase [Glycine max]
Length = 500
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+ H +A+D+F EE IVRRELADN+C+Y +YD ++GA+ WA+ TL +H
Sbjct: 287 QRCALEARKRRNSHPQAIDAFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLTEH 345
>gi|255070203|ref|XP_002507183.1| predicted protein [Micromonas sp. RCC299]
gi|226522458|gb|ACO68441.1| predicted protein [Micromonas sp. RCC299]
Length = 579
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGA-FDWAKKTLNDH 130
QR LE RR +KAVD F EE IVRRELADNFC+Y+ YD +EG ++WAK+T+ +H
Sbjct: 274 QRCALEARRYAKSSNKAVDVFLEELIVRRELADNFCWYSPKYDTIEGQKYEWAKETVREH 333
>gi|385809101|ref|YP_005845497.1| Deoxyribodipyrimidine photolyase [Ignavibacterium album JCM 16511]
gi|383801149|gb|AFH48229.1| Deoxyribodipyrimidine photolyase [Ignavibacterium album JCM 16511]
Length = 447
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR L V + H A SF EE IVRREL+DNFCY+N YD EG DWAKKTLN+HR
Sbjct: 263 QRVALTVEQFYGNHPSA-KSFLEELIVRRELSDNFCYFNPKYDSFEGFPDWAKKTLNEHR 321
>gi|76667611|dbj|BAE45635.1| photolyase [Oryza sativa Japonica Group]
Length = 481
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
R LE ++ K+VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 297 RCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
>gi|164455158|dbj|BAF97082.1| CPD photolyase [Oryza rufipogon]
Length = 506
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
R LE ++ K+VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 297 RCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
>gi|53147493|dbj|BAD52107.1| CPD photolyase [Oryza sativa Indica Group]
gi|70067245|dbj|BAE06247.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455150|dbj|BAF97078.1| CPD photolyase [Oryza rufipogon]
gi|164455152|dbj|BAF97079.1| CPD photolyase [Oryza rufipogon]
gi|164455154|dbj|BAF97080.1| CPD photolyase [Oryza rufipogon]
gi|164455156|dbj|BAF97081.1| CPD photolyase [Oryza rufipogon]
gi|164455162|dbj|BAF97084.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455164|dbj|BAF97085.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455168|dbj|BAF97087.1| CPD photolyase [Oryza sativa]
gi|164455182|dbj|BAF97094.1| CPD photolyase [Oryza rufipogon]
Length = 506
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
R LE ++ K+VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 297 RCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
>gi|164455172|dbj|BAF97089.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K++D+F EE +VRRELADNFCYY Y + GA++WA+KTL DH
Sbjct: 296 QRCALEAKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYGSLSGAWEWARKTLMDH 354
>gi|320169667|gb|EFW46566.1| deoxyribodipyrimidine photo-lyase [Capsaspora owczarzaki ATCC
30864]
Length = 634
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA+L + ++VD F EEA+VRREL+DNFC+YN NYD + GA WA++TL H
Sbjct: 412 QRAILVAYAAHARCRESVDVFVEEALVRRELSDNFCFYNPNYDSIAGASAWAQETLQAH 470
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + LNI FH G A E LP FVE +LGAVV DF P+R W L L
Sbjct: 184 GLREVETALRGLNISFHLFTGTAAEHLPGFVESKRLGAVVTDFSPVRVIQRWTTELANSL 243
Query: 65 PKD-------------VPLIQRAVLEVRRVLP 83
+ +PLIQ L+ V+P
Sbjct: 244 AQTTIATTGATQSHTGIPLIQ---LDAHNVVP 272
>gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus]
gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus]
Length = 472
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 39/59 (66%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR VLE + H K+V F +E I+RRELADNFCYYNK YD +E WA++TL H
Sbjct: 271 QRVVLETLKYKSIHPKSVSVFLDEIIIRRELADNFCYYNKRYDSIESTHSWARETLEAH 329
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLKE+ E+C KL+I F+ + G + ++P ++K+K+G V+ DF PLR + L
Sbjct: 84 GLKEIAEECIKLSIGFNAVYGLPNVLIPSIIKKYKVGVVITDFFPLRVPEKLIKQVTSVL 143
Query: 65 PKDVPLIQ 72
P V IQ
Sbjct: 144 PDKVVFIQ 151
>gi|5081541|gb|AAD39433.1|AF129458_1 class II DNA photolyase [Chlamydomonas reinhardtii]
Length = 612
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QRA LE + K+ AV+S+ EE +VRRELADNFC+Y YD +E A +WA+ +L+ HR
Sbjct: 322 QRAALEAAKHRAKYKAAVESYLEELVVRRELADNFCHYCPTYDSLEAAAEWARDSLDKHR 381
Score = 35.0 bits (79), Expect = 8.6, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTL---- 60
GL+++ + I+F+ L G LPQ V G +V D+ PLR W D +
Sbjct: 124 GLRQLAPRLEARGIKFYLLKGDPAHTLPQLVSGLGAGLLVTDYSPLRLGRTWRDQVCSAL 183
Query: 61 ------KKDLPKDVPL---IQRAVLEVRRVLPKHSKAVDSFCEE 95
+ D VP+ ++ + R + PK KA+ F E
Sbjct: 184 GSVPVHEVDAHNVVPVWAASEKREVGARTLRPKIHKALPEFLRE 227
>gi|225470301|ref|XP_002266483.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Vitis vinifera]
Length = 485
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ +AVD F EE IVRRELADNFC+Y Y+ ++GA++WA+KTL DH
Sbjct: 277 QRCALEAKKNRKNCPQAVDVFLEELIVRRELADNFCFYQPRYNSLQGAWEWARKTLMDH 335
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 5 GLKEVHEDCKK-LNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKD 63
GL+ +H D ++ L I F G A E +P F+ ++ +V DF PLRE W + + K
Sbjct: 78 GLRLLHRDLEQTLQIPFFLFQGEAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICKR 137
Query: 64 LPKDVPL 70
+ K V +
Sbjct: 138 VGKKVSI 144
>gi|302843525|ref|XP_002953304.1| class II photolyase [Volvox carteri f. nagariensis]
gi|300261401|gb|EFJ45614.1| class II photolyase [Volvox carteri f. nagariensis]
Length = 589
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QRA LE + K AV+SF EE +VRREL+DNFC+Y NYD + A +WA++TL HR
Sbjct: 323 QRAALEAAKHRAKFKAAVESFLEELVVRRELSDNFCHYTPNYDSLACAAEWARETLEKHR 382
>gi|296082842|emb|CBI22143.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ +AVD F EE IVRRELADNFC+Y Y+ ++GA++WA+KTL DH
Sbjct: 278 QRCALEAKKNRKNCPQAVDVFLEELIVRRELADNFCFYQPRYNSLQGAWEWARKTLMDH 336
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 5 GLKEVHEDCKKLNIEFHFL---IGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLK 61
GL+ +H D ++ ++ L G A E +P F+ ++ +V DF PLRE W + +
Sbjct: 78 GLRLLHRDLEQ-TLQIPLLDSHSGEAIETIPNFLREYGASLLVTDFSPLREVQKWKEEIC 136
Query: 62 KDLPKDVPL 70
K + K V +
Sbjct: 137 KRVGKKVSI 145
>gi|358335722|dbj|GAA29131.2| deoxyribodipyrimidine photo-lyase [Clonorchis sinensis]
Length = 518
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRAVLEV + K+ ++VD F EEA RRELADNFC++ YD+++GA WA+ TL+ H
Sbjct: 331 QRAVLEVAALQHKYGRSVDVFIEEAFNRRELADNFCFHTPLYDRLQGARQWAQDTLHKH 389
>gi|357481903|ref|XP_003611237.1| CPD photolyase [Medicago truncatula]
gi|355512572|gb|AES94195.1| CPD photolyase [Medicago truncatula]
Length = 517
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 81 VLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
V PK AVD+F EE IVRRELADNFCYY +YD ++GA++WA+KTL DH
Sbjct: 314 VFPKKV-AVDTFLEELIVRRELADNFCYYQPHYDSIQGAWEWARKTLLDH 362
>gi|325947635|gb|ADZ46042.1| CPD photolyase, partial [Dunaliella tertiolecta]
Length = 236
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%)
Query: 70 LIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
L QR L + K+ +AVD F EE +VRRELADNFC Y NYD ++ A +WAK++LN
Sbjct: 137 LAQRIALSASKHRAKYKEAVDGFLEELVVRRELADNFCEYTPNYDSLDCAAEWAKESLNV 196
Query: 130 HR 131
HR
Sbjct: 197 HR 198
>gi|170716940|gb|ACB32172.1| DNA photolyase [Ampelophaga rubiginosa nucleopolyhedrovirus]
Length = 564
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 44/61 (72%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QR VL++ + + +VD + +E +VRRELADNFC+YN YD VEGA WA++T++ H
Sbjct: 368 VQRVVLKILSLKSVYPDSVDRYIDEVVVRRELADNFCFYNDRYDCVEGAPQWAQETIDQH 427
Query: 131 R 131
+
Sbjct: 428 K 428
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLK V +C +LNI F+ L G L +V+ + + AVV DF PLR W +K L
Sbjct: 177 GLKSVQRECHELNIGFNVLDGSGDLTLNDWVQTNNISAVVCDFNPLRVVRDWVTKVKSQL 236
Query: 65 PKDVPLIQRAVLEVRRVLP 83
P + A ++ ++P
Sbjct: 237 ---APHVFFAQVDAHNIIP 252
>gi|410462734|ref|ZP_11316295.1| photolyase PhrII [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984146|gb|EKO40474.1| photolyase PhrII [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 449
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA LEV +H+ VD++ EE +VRREL+DN+C+Y +YD+ E DWA+KTL+ H
Sbjct: 265 QRAALEVLAARGRHAADVDAYLEELVVRRELSDNYCHYTPHYDRYEALPDWARKTLDAH 323
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGW 56
GL E + + FH L+G ++P F+++ G V DF PLR + W
Sbjct: 75 GLAETEAALRARGVPFHLLLGDPAAVVPPFLDELHAGVCVTDFDPLRLKIAW 126
>gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 448
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR L+V++ L ++ ++F EE IVRREL+DNFC+YN+NYD +G WA+KTL+ HR
Sbjct: 264 QRVALQVKKQLDTPVQSREAFLEELIVRRELSDNFCHYNQNYDNFQGLPAWAQKTLDKHR 323
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTL--KK 62
GL E + LNI + G A +LP ++EKH+ +V+DF PLR W + K
Sbjct: 75 GLHECAGVAESLNIPLDLVRGEAGLVLPAYLEKHRASFLVMDFDPLRIKKSWQKAVLDKT 134
Query: 63 DLPKD-------VP---LIQRAVLEVRRVLPKHSKAVDSFCEE 95
+P VP Q+ R + PK + ++ F E+
Sbjct: 135 GIPAHLVDAHNIVPCWSTSQKQEYAARTIRPKIHRQLEEFLED 177
>gi|383787199|ref|YP_005471768.1| Deoxyribodipyrimidine photo-lyase type II [Fervidobacterium
pennivorans DSM 9078]
gi|383110046|gb|AFG35649.1| Deoxyribodipyrimidine photo-lyase type II [Fervidobacterium
pennivorans DSM 9078]
Length = 465
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LE+ + + ++V F EE IVRRELADNFC YN+NYD +G +WAKK+LN HR
Sbjct: 276 QRVALEIIQYERYYPESVADFLEELIVRRELADNFCLYNENYDSFDGFPEWAKKSLNAHR 335
>gi|255078656|ref|XP_002502908.1| DNA photolyase [Micromonas sp. RCC299]
gi|226518174|gb|ACO64166.1| DNA photolyase [Micromonas sp. RCC299]
Length = 478
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 41/59 (69%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR +E + KH +AVDSF EE IVRRELADNFC +N +YD + GA WA+++L H
Sbjct: 290 QRCAVEATKHRAKHPEAVDSFLEELIVRRELADNFCLHNPHYDSIAGAPGWARESLALH 348
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEI-LPQFVEKHKLGAVVIDFMPLREHMGWADTLKKD 63
GL+E+ + L I FH G + +P E+ +V DF PLR W D++
Sbjct: 73 GLRELESRLRDLGIPFHLAQGPDPGVSVPAAAERLGCSMLVTDFSPLRIGRAWRDSVTTL 132
Query: 64 L-PKDVPLIQRAVLEVRRVLP 83
L P DVP+ A ++ V+P
Sbjct: 133 LCPVDVPV---AEVDAHNVVP 150
>gi|168024934|ref|XP_001764990.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
subsp. patens]
gi|162683799|gb|EDQ70206.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
subsp. patens]
Length = 495
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V H+K+VD+F EE IVR LA+NFC+Y NYD ++GA+ WA+++L H
Sbjct: 281 QRCALEARKVRKVHTKSVDAFLEELIVRGGLAENFCHYQPNYDNLKGAWGWAQESLRIH 339
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+ V ++ K +NI F G E +P+F++K +V+D+ LR W + + +++
Sbjct: 83 GLRVVEQNLKAVNIPFFLFRGNPVETIPEFLKKCNASLLVMDYSSLRIGRQWRNGVCENV 142
Query: 65 PKDVPLIQRAVLEVRRVLP 83
V + A ++ V+P
Sbjct: 143 ASSVAV---AEVDAHNVVP 158
>gi|440797984|gb|ELR19058.1| type II CPD DNA photolyase [Acanthamoeba castellanii str. Neff]
Length = 577
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR +LE + K ++ +++ EE IVRRELADNFCYYN++YD+ EG DWA+K+L +H
Sbjct: 300 QRIILEAMKHKAKAKESYEAYFEELIVRRELADNFCYYNQHYDQFEGFPDWARKSLEEH 358
>gi|356497173|ref|XP_003517437.1| PREDICTED: LOW QUALITY PROTEIN: deoxyribodipyrimidine
photo-lyase-like [Glycine max]
Length = 360
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE + H +A+D+F EE IVRRELADN+C+Y +YD ++GA+ WA+ TL +H
Sbjct: 147 QRCALEAGKQQNSHPQAIDAFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLIEH 205
>gi|22655767|gb|AAN04184.1| Putative CPD photolyase [Oryza sativa Japonica Group]
Length = 565
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
++VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 321 QSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 364
>gi|218184184|gb|EEC66611.1| hypothetical protein OsI_32845 [Oryza sativa Indica Group]
Length = 516
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
++VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 321 QSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 364
>gi|222612495|gb|EEE50627.1| hypothetical protein OsJ_30831 [Oryza sativa Japonica Group]
Length = 516
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
++VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 321 QSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 364
>gi|9633937|ref|NP_052016.1| gp127L [Rabbit fibroma virus]
gi|6578656|gb|AAF18010.1|AF170722_128 gp127L [Rabbit fibroma virus]
Length = 445
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VLE + ++V +F +E +VRREL+DNFCYYNK YD + WA +TL+DHR
Sbjct: 258 QRVVLETVAYTSTYPESVATFLDEIVVRRELSDNFCYYNKLYDSITSTHPWALRTLDDHR 317
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLR 51
GL+EV ++C K + F G ++LP+ V+KH + +DF PLR
Sbjct: 73 GLREVEDECVKRSFGFVLRYGCPKDVLPEEVKKHNARWIFVDFYPLR 119
>gi|118175518|gb|ABK76277.1| CPD photolyase [Dunaliella salina]
Length = 529
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDK-VEG-AFDWAKKTLND 129
QRA LE ++ +H +AVD + EE IVRRELADNFC + +YDK V G A+DWA K+L
Sbjct: 336 QRAALEASKLRSRHREAVDRYLEELIVRRELADNFCEHCPDYDKLVPGTAYDWALKSLEK 395
Query: 130 HR 131
H+
Sbjct: 396 HK 397
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+E+ ++ NI F+ L G + +PQ V+ + G VV D+ PLR W + L
Sbjct: 132 GLRELETKLRQFNIPFYLLRGQPEDTIPQLVDALRAGLVVSDYSPLRLSKQWKQQVAAKL 191
>gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photo-lyase [Geobacter sulfurreducens PCA]
gi|409913272|ref|YP_006891737.1| deoxyribodipyrimidine photo-lyase [Geobacter sulfurreducens KN400]
gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter
sulfurreducens PCA]
gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter
sulfurreducens KN400]
Length = 461
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/42 (66%), Positives = 34/42 (80%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
D+F EE IVRRELADNFCYYN YD+ +G +WA++TLN HR
Sbjct: 282 DAFLEELIVRRELADNFCYYNDAYDRFDGFPEWAQRTLNRHR 323
>gi|402502123|ref|YP_006607781.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus]
gi|284431213|gb|ADB84373.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus]
Length = 395
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 71 IQRAVLEVRRVLPKHSKA-VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
+QR V + +H ++ V+++ EE VRRELADNFCYYN NYD+ EGA DWAK+TL+
Sbjct: 209 VQRVVWYLIVAKMQHFESNVETYIEECFVRRELADNFCYYNINYDRFEGAPDWAKETLSL 268
Query: 130 H 130
H
Sbjct: 269 H 269
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLK +H++CK+LNI F L G E L +V+K+ + +V DF PLR W +K L
Sbjct: 13 GLKLIHKECKQLNITFVVLNGSGDETLVDWVKKYNIAGIVCDFNPLRIVRRWTARVKTQL 72
Query: 65 PKDVPLIQ 72
P DV Q
Sbjct: 73 PSDVYFAQ 80
>gi|384252096|gb|EIE25573.1| CPD photolyase [Coccomyxa subellipsoidea C-169]
Length = 447
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA LE ++ K + V++F EE +VRREL+DN+C+Y NYD ++ + WA++TL H
Sbjct: 248 QRAALEASKLRSKFKEGVEAFNEECVVRRELSDNYCFYTPNYDTLDACYPWARETLQKH 306
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLK + + LNI F L G + +P+ V++ +V DF PLR W D + + L
Sbjct: 51 GLKLMQPKLEALNIPFFLLKGDPVQTVPELVQRTGASLLVTDFAPLRLGRQWRDQVAEKL 110
>gi|239905196|ref|YP_002951935.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
gi|239795060|dbj|BAH74049.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
Length = 449
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA LEV H D++ EE +VRREL+DN+C+Y NYD+ + DWA+KTL+ H
Sbjct: 265 QRAALEVLAARAGHVADADAYLEELLVRRELSDNYCHYTPNYDRYDALPDWARKTLDAH 323
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL E + + FH L+G + P+F+ GA V DF P+R W + +
Sbjct: 75 GLAETEAALRARGVPFHLLLGDPAAVAPEFLRAIAAGACVTDFDPMRVKTLWKRAVAEAF 134
Query: 65 PKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELA 103
PL++ ++ V+P C A RRE A
Sbjct: 135 AG--PLLE---VDAHNVVP---------CVVASPRREYA 159
>gi|145345173|ref|XP_001417095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577321|gb|ABO95388.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 506
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 72 QRAVLEVRRVLPKHSK-AVDSFCEEAIVRRELADNFCYYNKNYDKVEGA-FDWAKKTLND 129
QR LE ++ + K S A +SF EE +VRREL+DNFCYY+ YD++EG +DWAK TL
Sbjct: 279 QRCALEAKKAVGKASPPAYESFFEELVVRRELSDNFCYYSPKYDQIEGQKYDWAKDTLRL 338
Query: 130 H 130
H
Sbjct: 339 H 339
>gi|328953264|ref|YP_004370598.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
11109]
gi|328453588|gb|AEB09417.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
11109]
Length = 463
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR EV+R + ++A +F EE IVRRELADNFC++N +YD+ G WA++TLN HR
Sbjct: 266 QRVAWEVQRAVAP-TEARQAFLEELIVRRELADNFCWHNPDYDRFSGFPAWAQETLNKHR 324
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+E+ ++ + NI F L G +P F+ + + GAVV DF PLR W D + L
Sbjct: 76 GLEELTQNLGQKNIPFFLLQGEPAATIPMFLAQSRAGAVVSDFDPLRIKRQWKDQV---L 132
Query: 65 PK 66
P+
Sbjct: 133 PR 134
>gi|326427066|gb|EGD72636.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 512
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
V +F EEA+VRREL+DNFC+YN+ YD ++GA WA+ TL+ HR
Sbjct: 298 GVQTFIEEAVVRRELSDNFCFYNRRYDSIDGAAVWARDTLDTHR 341
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 6 LKEVHEDCKKLN---IEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKK 62
L+ +H+ K L+ + FH L G A +P F +H+ AV+ D PLR + W + +
Sbjct: 83 LRGLHQTAKHLHEKLVPFHLLQGSAATTVPAFAAQHEAAAVICDMSPLRVPLRWVKDVGQ 142
Query: 63 DL-PKDVPLIQ 72
L ++VPL+Q
Sbjct: 143 ALEAQNVPLLQ 153
>gi|428177800|gb|EKX46678.1| hypothetical protein GUITHDRAFT_162898 [Guillardia theta CCMP2712]
Length = 505
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
R LE + HS++ S+ EE +VRREL+DNFC+YNK YD +EG WA++TL H
Sbjct: 354 RCALEAKSFSKMHSESYASYIEELVVRRELSDNFCHYNKKYDSLEGCAGWAQETLKVH 411
>gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
12261]
gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
12261]
Length = 456
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+VDSF EE IVRRELADNFC+Y +YD EG WA+KTL++HR
Sbjct: 281 SVDSFLEELIVRRELADNFCFYTPSYDCFEGFPQWAQKTLDEHR 324
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL EV + LNI F L A LP ++K + A+ DF PLR W + +KKD+
Sbjct: 72 GLHEVRQGLLGLNIPFILLEQEAPLSLPNLIKKIDVSALFTDFSPLRIKKEWVEQIKKDI 131
Query: 65 PKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELA 103
+P + ++ ++P C EA ++E +
Sbjct: 132 --AIPFYE---IDAHNIVP---------CWEASTKKEYS 156
>gi|320355418|ref|YP_004196757.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
propionicus DSM 2032]
gi|320123920|gb|ADW19466.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
propionicus DSM 2032]
Length = 451
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 75 VLEV-RRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
VLE+ RR L H + VDSF EE +VRRELADNFC + +YD++ G +WA++TL HR
Sbjct: 258 VLEIGRRGL--HGEVVDSFIEELVVRRELADNFCLHTPDYDQISGFPEWAQRTLARHR 313
>gi|389584197|dbj|GAB66930.1| deoxyribodipyrimidine photolyase [Plasmodium cynomolgi strain B]
Length = 566
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 13/68 (19%)
Query: 72 QRAVLEVRRVLPKHS---------KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDW 122
QR VLEV KH+ +SF ++ I+R+ELADN+CYYNKNYD EG DW
Sbjct: 331 QRCVLEVH----KHAYSNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYDNFEGGRDW 386
Query: 123 AKKTLNDH 130
AK++L H
Sbjct: 387 AKESLKKH 394
>gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photolyase [Desulfovibrio alaskensis G20]
gi|78217631|gb|ABB36980.1| deoxyribodipyrimidine photolyase [Desulfovibrio alaskensis G20]
Length = 487
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 72 QRAVLEVRRVLPK-----HSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKT 126
QRAVLEV + + + +F EE +VRRELADNFC+Y +YD VE DWA KT
Sbjct: 272 QRAVLEVMQAQGTAAGGTYGEGAAAFVEELVVRRELADNFCWYEPSYDSVEAFPDWALKT 331
Query: 127 LNDHR 131
L+ HR
Sbjct: 332 LDRHR 336
>gi|397576288|gb|EJK50169.1| hypothetical protein THAOC_30888 [Thalassiosira oceanica]
Length = 627
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 58 DTLKKDLPKDV-----PLI-------QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADN 105
D+++ D +DV P I QR LEVR L KH+ ++ EE +VRREL+DN
Sbjct: 393 DSMRNDPNQDVCSNLSPWINHGQVSFQRLALEVR-ALKKHTNGTAAYIEEGVVRRELSDN 451
Query: 106 FCYYN-KNYDKVEGAFDWAKKTLNDH 130
F YY +YD +EGA DWA+ +L H
Sbjct: 452 FVYYTPSSYDSLEGAADWARDSLQLH 477
>gi|221057079|ref|XP_002259677.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase) [Plasmodium knowlesi strain H]
gi|193809749|emb|CAQ40451.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium knowlesi strain H]
Length = 923
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 13/68 (19%)
Query: 72 QRAVLEVRRVLPKHS---------KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDW 122
QR VLEV KH+ +SF ++ I+R+ELADN+CYYNKNYD EG DW
Sbjct: 688 QRCVLEVH----KHAYNNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYDNFEGGRDW 743
Query: 123 AKKTLNDH 130
AK++L H
Sbjct: 744 AKESLKKH 751
>gi|9633763|ref|NP_051841.1| m127L [Myxoma virus]
gi|6523982|gb|AAF15015.1|AF170726_131 m127L [Myxoma virus]
gi|170664593|gb|ACB28750.1| m127L [Myxoma virus]
gi|170664766|gb|ACB28922.1| m127L [recombinant virus 6918VP60-T2]
gi|301134653|gb|ADK63767.1| m127L [Myxoma virus]
gi|408684620|gb|AFU77059.1| m127L [Myxoma virus]
gi|408684788|gb|AFU77226.1| m127L [Myxoma virus]
gi|408684954|gb|AFU77391.1| m127L [Myxoma virus]
gi|408685293|gb|AFU77728.1| m127L [Myxoma virus]
gi|408685462|gb|AFU77896.1| m127L [Myxoma virus]
gi|408685628|gb|AFU78061.1| m127L [Myxoma virus]
gi|408685796|gb|AFU78228.1| m127L [Myxoma virus]
gi|408686131|gb|AFU78561.1| m127L [Myxoma virus]
gi|408686300|gb|AFU78729.1| m127L [Myxoma virus]
gi|408686468|gb|AFU78896.1| m127L [Myxoma virus]
gi|408686635|gb|AFU79062.1| m127L [Myxoma virus]
gi|408686803|gb|AFU79229.1| m127L [Myxoma virus]
gi|408686971|gb|AFU79396.1| m127L [Myxoma virus]
gi|408687139|gb|AFU79563.1| m127L [Myxoma virus]
gi|408687307|gb|AFU79730.1| m127L [Myxoma virus]
gi|408687475|gb|AFU79897.1| m127L [Myxoma virus]
gi|408687642|gb|AFU80063.1| m127L [Myxoma virus]
gi|408687810|gb|AFU80230.1| m127L [Myxoma virus]
gi|408687978|gb|AFU80397.1| m127L [Myxoma virus]
gi|408688146|gb|AFU80564.1| m127L [Myxoma virus]
gi|408688315|gb|AFU80732.1| m127L [Myxoma virus]
Length = 445
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VL+ + +V +F +E +VRREL+DNFCYYNK YD + WA +TL++HR
Sbjct: 258 QRVVLDTVVYASIYPASVAAFLDEIVVRRELSDNFCYYNKRYDSITSTHPWALRTLDEHR 317
>gi|408685123|gb|AFU77559.1| m127L [Myxoma virus]
Length = 445
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VL+ + +V +F +E +VRREL+DNFCYYNK YD + WA +TL++HR
Sbjct: 258 QRVVLDTVVYASIYPASVAAFLDEIVVRRELSDNFCYYNKRYDSITSTHPWALRTLDEHR 317
>gi|299473188|emb|CBN78764.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 506
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
Q AV+ V+ +H V +F E+ +VRREL+DNFC+YN NYD + GA WA+++L H
Sbjct: 282 QAAVMRVK-ASRRHPDGVKAFVEQGVVRRELSDNFCFYNDNYDNLSGAAGWARESLEAH 339
>gi|124506191|ref|XP_001351693.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium falciparum 3D7]
gi|23504621|emb|CAD51500.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium falciparum 3D7]
Length = 1113
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 72 QRAVLEVRRVLPKHSK-----AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKT 126
QR VLEV + + + F EE I+++ELADNFCYYNKNYD G DWAK +
Sbjct: 878 QRCVLEVNKYANSYPSINTISGKELFSEEMIMKKELADNFCYYNKNYDNFNGGKDWAKDS 937
Query: 127 LNDH 130
L H
Sbjct: 938 LKKH 941
>gi|256071674|ref|XP_002572164.1| DNA photolyase [Schistosoma mansoni]
gi|353229929|emb|CCD76100.1| putative DNA photolyase [Schistosoma mansoni]
Length = 490
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRAVLEV V ++ D F EE RRELA+NFC++ YD ++GA+DWA+++L H
Sbjct: 301 QRAVLEVVAVQKHFGRSADIFIEECFNRRELAENFCFHTPFYDSIKGAYDWARESLMTH 359
>gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
2638]
gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
2638]
Length = 445
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA LEV ++VDS+ EE I+RREL+DNFC + NYD ++ A +WA+KTL++H
Sbjct: 263 QRAALEV--AARPTGESVDSYLEELIIRRELSDNFCLHTPNYDSLDAAPEWAQKTLSEH 319
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
G+++V +D +KL +F L G E LP FV + GAVV DF PLR W + + + +
Sbjct: 75 GMQQVEKDLRKLGYDFVLLSGQPDETLPAFVSNIRAGAVVTDFDPLRIKQQWQENVGQKI 134
Query: 65 PKDVPLIQ---------RAVLE-----VRRVLPKHSKAVDSFCEE 95
D+PL++ R V + R + PK + + F EE
Sbjct: 135 --DIPLLEVDGHNIVPARFVTDKREYGARTIRPKIQRLLPEFLEE 177
>gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 455
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 34/48 (70%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
K + VDSF E IV RELA NFCYYN NY+ EG DWAKKTL DH+
Sbjct: 282 KKDENVDSFFNELIVWRELARNFCYYNPNYNHYEGIPDWAKKTLEDHK 329
>gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
str. Fusaro]
gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
str. Fusaro]
Length = 462
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
Query: 58 DTLKKDLPKDV-----PLIQRAVLEVRRVLPKHSKA---VDS---FCEEAIVRRELADNF 106
+L+ D KD P + + +RV K KA ++S F +E +VR+ELADNF
Sbjct: 251 SSLRNDPTKDALSNLSPYLHFGQISAQRVALKVEKAKADLESKRVFLDELLVRKELADNF 310
Query: 107 CYYNKNYDKVEGAFDWAKKTLNDHR 131
CYYN YD +G DWAKKTLN HR
Sbjct: 311 CYYNPFYDSFDGFPDWAKKTLNSHR 335
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + I F FL G E +P F+EK+ +G ++ DF PLR W + + +
Sbjct: 73 GLQEVEATLARKKIPFFFLQGDPEEKIPDFIEKYGIGTLITDFSPLRIKRTWTEKVASSI 132
Query: 65 PKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELA 103
VP + ++ V+P C EA ++E A
Sbjct: 133 --KVPFFE---VDAHNVVP---------CWEASKKQEYA 157
>gi|424513339|emb|CCO65961.1| CPD photolyase [Bathycoccus prasinos]
Length = 645
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 85 HSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGA-FDWAKKTLNDH 130
+ KAVD F EE +VRRELADNFCYY+ YD +EG +DWAK TL H
Sbjct: 424 NGKAVDVFFEELVVRRELADNFCYYSPQYDTIEGQKYDWAKDTLRMH 470
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGG--AHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKK 62
GL+EV ++ +I F L GG + + +F + AVV DF PLR + W D K
Sbjct: 211 GLREVESALEERDIPFKLLHGGDEPNAEIEKFCNEVNASAVVTDFSPLRLGLKWRDDFAK 270
Query: 63 DLPKDVPLI 71
+ + V ++
Sbjct: 271 ETKRSVRVV 279
>gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379]
gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus
DSM 2379]
Length = 450
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LE R L S + ++F +E IVRREL+DNFC +N+ YD++EG WA KTL +HR
Sbjct: 266 QRVALETVRTL-SGSPSSEAFLDELIVRRELSDNFCLHNQAYDRLEGFPAWALKTLGEHR 324
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWAD 58
GL E + K+NI F+ L G L FVE++++G VV DF PLR W +
Sbjct: 76 GLAETAQLLAKMNIPFYLLRGEPVGQLCSFVERNRVGTVVTDFDPLRVKRVWRE 129
>gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia]
Length = 453
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 76 LEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
LE + P S+ +SF EE IVRREL+ NFCYYN YDK EG DWAK TL +H
Sbjct: 268 LEAMKFPPSESR--ESFLEELIVRRELSMNFCYYNDLYDKYEGLPDWAKNTLQEH 320
>gi|294942625|ref|XP_002783615.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
gi|239896117|gb|EER15411.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
Length = 506
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR + + + + D F E+ ++RRELADNFCYYN NYDK EG DW + TL +H
Sbjct: 283 QRVIYDAYNSTDINEEDRDEFIEQCMIRRELADNFCYYNDNYDKFEGFPDWGQHTLREH 341
>gi|294942633|ref|XP_002783619.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
50983]
gi|239896121|gb|EER15415.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
50983]
Length = 506
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR + + + + D F E+ ++RRELADNFCYYN NYDK EG DW + TL +H
Sbjct: 283 QRVIYDAYNSTDINEEDRDEFIEQCMIRRELADNFCYYNDNYDKFEGFPDWGQHTLREH 341
>gi|303276170|ref|XP_003057379.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461731|gb|EEH59024.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 431
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 68 VPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTL 127
V + R LEV+R P+H+++VD F +E ++RRELA NF N YD +G WA+ TL
Sbjct: 254 VVYVTRRALEVKRRDPRHARSVDVFLDELVIRRELAINFVLNNPKYDSYDGLPRWARITL 313
Query: 128 NDH 130
DH
Sbjct: 314 ADH 316
>gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
Length = 453
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA L + + D+F EE +VRRELADNFC Y YD E +WA+KTL H
Sbjct: 265 QRAALATLEARSRAKEGADAFLEELVVRRELADNFCLYEPEYDSFEALPEWARKTLAAH 323
>gi|260796887|ref|XP_002593436.1| hypothetical protein BRAFLDRAFT_206680 [Branchiostoma floridae]
gi|229278660|gb|EEN49447.1| hypothetical protein BRAFLDRAFT_206680 [Branchiostoma floridae]
Length = 316
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLND 129
+QR++L V++ +HS++V+ + +EA++ RE+A+N +YN + YD + GA DWA+KTL D
Sbjct: 126 VQRSILTVQQFQTEHSQSVEKYIDEAVIWREMAENSAFYNPDRYDSLLGAPDWAQKTLRD 185
Query: 130 H 130
H
Sbjct: 186 H 186
>gi|452944037|ref|YP_007500202.1| DNA photolyase FAD-binding protein [Hydrogenobaculum sp. HO]
gi|452882455|gb|AGG15159.1| DNA photolyase FAD-binding protein [Hydrogenobaculum sp. HO]
Length = 455
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 34/48 (70%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
K + VDSF E IV RELA NFCYYN NY+ EG DWAKKTL +H+
Sbjct: 282 KRDENVDSFFNELIVWRELARNFCYYNPNYNHYEGIPDWAKKTLEEHK 329
>gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
12809]
gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
12809]
Length = 446
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 35/43 (81%)
Query: 89 VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+ +F EE +VRRELA+N+C+YN +YD VEGA WAKKT+ +HR
Sbjct: 276 IRAFKEELVVRRELAENYCFYNDHYDSVEGAHSWAKKTIEEHR 318
>gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
Length = 462
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 72 QRAVLEVRRVL--PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
QR VLEV + P+ KA F +E +V +E+ADNFCYYN YD E DWAKK+LN
Sbjct: 277 QRVVLEVEKAKSDPESKKA---FLDEILVWKEIADNFCYYNPGYDSFESFPDWAKKSLNA 333
Query: 130 HR 131
HR
Sbjct: 334 HR 335
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+E+ E + I F+FL G + +P+FV+++++G ++ DF PLR W + +
Sbjct: 73 GLQELEEALSRKKIPFYFLRGDPGQKIPEFVKEYEVGTLITDFSPLRIKAEWVGKIISAI 132
Query: 65 PKDVPLIQ---RAVLEVRRVLPKHSKAVDSF 92
++P + V+ PK A +F
Sbjct: 133 --EIPFFEVDAHNVVPCWEASPKQEYAAHTF 161
>gi|452853146|ref|YP_007494830.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio piezophilus]
gi|451896800|emb|CCH49679.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio piezophilus]
Length = 445
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QRA L V +AV + EE IVRREL+DNFC YN YD + GA +WA KTL++HR
Sbjct: 262 QRAALAVAGSGKGEGQAV--YLEEVIVRRELSDNFCLYNIRYDSLHGAPNWALKTLDEHR 319
Score = 42.7 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL EV D L I F +G E + + V + +GAVV DF PLR GW + L
Sbjct: 74 GLAEVENDLAALGIAFLLRLGDPEEEVIRCVLEKGVGAVVTDFDPLRIKQGWQKEVASTL 133
Query: 65 PKDVPLIQRAVLEVRRVLPKHS 86
VPLI+ ++ V+P S
Sbjct: 134 --RVPLIE---VDGHNVVPARS 150
>gi|68304208|ref|YP_249676.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973037|gb|AAY84003.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 489
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 71 IQRAVLEVRRV-LPKHSKAVDS----FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKK 125
+QR +L + + + K+ +DS + EE VRRELADNFC+YN NYD GA +WAK+
Sbjct: 299 VQRVMLHLNSLKINKNDSGIDSNINDYIEECFVRRELADNFCFYNSNYDTFLGAPNWAKE 358
Query: 126 TLNDHR 131
TL H+
Sbjct: 359 TLVIHK 364
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV +C+KL+I F L G A +L +V +H + AVV DF PLR W ++ L
Sbjct: 103 GLEEVRVECQKLDITFVMLDGSADLVLNDWVREHDICAVVCDFNPLRTVREWVSRIRDQL 162
Query: 65 PKDVPLIQRAVLEVRRVLP 83
P V Q ++ V+P
Sbjct: 163 PDTVYFAQ---VDAHNVVP 178
>gi|187234364|gb|ACD01434.1| DNA photolyase II [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|195976055|gb|ACG63559.1| DNA photolyase II [Plusia acuta nucleopolyhedrovirus]
Length = 243
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 24 IGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDLPKDVPLIQRAVLEVRRVL- 82
+G I P ++ + A I L+ M + + K P + V+RV+
Sbjct: 76 VGPVDWIEPGYISALNVLARFIRCNLLKYKMSRNNPVLKTQSNMSPFYHFGQISVQRVML 135
Query: 83 -------PKHSKAVDS----FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
K+ +DS + EE VRRELADNFC+YN NYD GA +WAK+TL H+
Sbjct: 136 HLNSLKINKNDSGIDSNINDYIEECFVRRELADNFCFYNSNYDTFLGAPNWAKETLVIHK 195
>gi|68076095|ref|XP_679967.1| DNA photolyase FAD binding domain [Plasmodium berghei strain ANKA]
gi|56500825|emb|CAH99772.1| FAD binding domain of DNA photolyase, putative [Plasmodium berghei]
Length = 812
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 72 QRAVLEVRRVLPKH-----SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKT 126
QR +LEV + + S + F ++ ++++ELADNFCYYNKNYD GA DWAK++
Sbjct: 562 QRCILEVNKYALQFPSIHASSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKES 621
Query: 127 LNDH 130
L H
Sbjct: 622 LKKH 625
>gi|70934909|ref|XP_738613.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase) [Plasmodium chabaudi chabaudi]
gi|56514975|emb|CAH79340.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium chabaudi chabaudi]
Length = 368
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 72 QRAVLEVRRV---LPK--HSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKT 126
QR +LEV + P S + F ++ ++++ELADNFCYYNKNYD GA DWAK++
Sbjct: 222 QRCILEVNKYALQFPSIHTSSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKES 281
Query: 127 LNDH 130
L H
Sbjct: 282 LKKH 285
>gi|156095570|ref|XP_001613820.1| deoxyribodipyrimidine photolyase [Plasmodium vivax Sal-1]
gi|148802694|gb|EDL44093.1| deoxyribodipyrimidine photolyase, putative [Plasmodium vivax]
Length = 973
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 13/68 (19%)
Query: 72 QRAVLEVRRVLPKHS---------KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDW 122
QR +LEV KH+ +SF ++ I+R+ELADN+CYYN+NY EG DW
Sbjct: 738 QRCILEVH----KHAYSNPSINAVSGKESFTDDFIMRKELADNYCYYNRNYCTFEGGRDW 793
Query: 123 AKKTLNDH 130
AK++L H
Sbjct: 794 AKESLKKH 801
>gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 455
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
K + VDSF E I RELA NFCYYN +Y+ EG DWAKKTL DH+
Sbjct: 282 KKDENVDSFFNELIAWRELARNFCYYNPSYNHYEGIPDWAKKTLEDHK 329
>gi|83315336|ref|XP_730750.1| DNA photolyase [Plasmodium yoelii yoelii 17XNL]
gi|23490568|gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii
yoelii]
Length = 849
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 72 QRAVLEVRRVLPKH-----SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKT 126
QR +LEV + + S + F ++ ++++ELADNFC+YNKNYD GA DWAK++
Sbjct: 598 QRCILEVNKYALQFPSIHASSGKEYFNDDLLIKKELADNFCFYNKNYDNFNGAKDWAKES 657
Query: 127 LNDH 130
L H
Sbjct: 658 LKKH 661
>gi|308810671|ref|XP_003082644.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
gi|116061113|emb|CAL56501.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
Length = 484
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+A+DS+ EE I+RREL+DNFC YN +YD + GA WA+ +L H
Sbjct: 308 EAIDSYLEELIIRRELSDNFCLYNPDYDSLRGASQWAQDSLALH 351
>gi|386855815|ref|YP_006259992.1| Deoxyribodipyrimidine photo-lyase type II [Deinococcus gobiensis
I-0]
gi|379999344|gb|AFD24534.1| Deoxyribodipyrimidine photo-lyase type II [Deinococcus gobiensis
I-0]
Length = 328
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
D+ EE +VRREL+ NFC+YN +YD+ EG DWA+KTL +H
Sbjct: 160 GTDALLEELVVRRELSFNFCWYNPDYDRYEGVPDWARKTLEEH 202
>gi|330506500|ref|YP_004382928.1| deoxyribodipyrimidine photo-lyase [Methanosaeta concilii GP6]
gi|328927308|gb|AEB67110.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
concilii GP6]
Length = 445
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 79 RRVLPKHSKAVDS--FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
R L S DS F EE +VRRELADNFCYYN +YD V+G +WA++TL H
Sbjct: 264 RVALMALSGMTDSSPFLEELVVRRELADNFCYYNPHYDSVQGFPNWAQETLRQH 317
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV D +LNI + L G + +PQF++ H+ G +V DF PLR M W ++ K++
Sbjct: 75 GLEEVETDLAELNIPLYLLSGDPAKEIPQFLQSHEAGILVSDFSPLRIKMIWQRSIAKEV 134
>gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
5692]
gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
5692]
Length = 469
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR L R +++ + F EE ++RRELA+NFC+YN YD G WA++TL+DHR
Sbjct: 271 QRVALMARDANWAPAESREGFLEELVIRRELAENFCFYNPVYDCFGGLPAWAQQTLDDHR 330
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 5 GLKEVHEDCKKLNIEFHFLIG-GAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTL 60
GL++V + KL I F L G L F H +G VV+DF PLR W T
Sbjct: 80 GLRQVADSAAKLGIPFVLLTGEDPPGELAGFCRTHAIGTVVMDFDPLRTKQQWQHTF 136
>gi|389843393|ref|YP_006345473.1| deoxyribodipyrimidine photolyase [Mesotoga prima MesG1.Ag.4.2]
gi|387858139|gb|AFK06230.1| deoxyribodipyrimidine photolyase [Mesotoga prima MesG1.Ag.4.2]
Length = 449
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 78 VRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
RRV+ SK +++ EE +VRREL NF +YN YD E WA+KTLN+HR
Sbjct: 265 ARRVIDSCSKGKNAYIEELVVRRELGVNFVFYNSKYDSFEALPQWAQKTLNEHR 318
>gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
13031]
gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
13031]
Length = 450
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 82 LPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+P S++ +F EE IVRREL+DN+C+YN YD +G+ WAK++L +HR
Sbjct: 273 MPDESRS--AFLEELIVRRELSDNYCFYNDRYDSFDGSPTWAKESLMNHR 320
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEI-LPQFVEKHKLGAVVIDFMPLREHMGWADTLKKD 63
GL EV ++LNI F +L+ G EI LP+F + K GAVV DF PL+ W +
Sbjct: 74 GLHEVERALRRLNIPF-YLVQGEPEIELPRFAREMKAGAVVTDFSPLKISREWKRRVGAH 132
Query: 64 LPKDVPLIQ 72
LP +PL +
Sbjct: 133 LP--LPLYE 139
>gi|148368871|ref|YP_001257001.1| DNA photolyase [Spodoptera litura granulovirus]
gi|147883384|gb|ABQ51993.1| DNA photolyase [Spodoptera litura granulovirus]
Length = 466
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEG-AFDWAKKTLNDH 130
QR +L V+ + +D+F +E +RRELADNFC+Y K YD +E A +WA TL H
Sbjct: 280 QRVILHVKSLTNVKGDNIDTFVDECFIRRELADNFCFYTKRYDSIEASAPNWALITLKAH 339
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLK V ++CK+LN+ FH L G ++L + ++ + +V DF P + M W LKK L
Sbjct: 91 GLKFVQQECKRLNVSFHLLDGSGDQVLLDWCNRNDVDVIVCDFNPTVKPMEWIHNLKKTL 150
Query: 65 PKDVPLIQRAVLEVRRVLP 83
P + L Q ++ +LP
Sbjct: 151 PGHMSLTQ---VDAHNILP 166
>gi|386001823|ref|YP_005920122.1| Deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
harundinacea 6Ac]
gi|357209879|gb|AET64499.1| Deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
harundinacea 6Ac]
Length = 448
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR LE + ++ +F EE +VRREL+DNFC+YN+ YD + WA+KTL++HR
Sbjct: 262 QRVALEAAK-WEADPRSKAAFLEELVVRRELSDNFCFYNRGYDTFDAFPAWARKTLDEHR 320
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + I F L G E +P FV +H A+V DF PL W + ++ L
Sbjct: 73 GLEEVERTLRDKEIPFVLLQGDPGETVPDFVREHSASALVTDFSPLATKRAWMEKAEEGL 132
Query: 65 PKDVPLIQ---RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFC 107
D+PL + V+ PK A +F + R L FC
Sbjct: 133 --DLPLREVDAHNVVPCWVASPKQEYAARTFRPKV---RRLLPIFC 173
>gi|224002719|ref|XP_002291031.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972807|gb|EED91138.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 468
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLND 129
QR L++R L KH+ ++ EE +VRREL+DNF YY + YD + GA DWA+ +L
Sbjct: 258 FQRLALDIR-ALKKHTNGTAAYIEEGVVRRELSDNFVYYTPDGYDSLAGAADWARDSLTL 316
Query: 130 H 130
H
Sbjct: 317 H 317
>gi|347732852|ref|ZP_08865923.1| DNA photolyase family protein [Desulfovibrio sp. A2]
gi|347518328|gb|EGY25502.1| DNA photolyase family protein [Desulfovibrio sp. A2]
Length = 450
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
DSF EE IVRRELADNFC + ++YD + DWA+ TL+ HR
Sbjct: 271 DSFLEELIVRRELADNFCLHAQDYDAITCFPDWARATLDKHR 312
>gi|21673346|ref|NP_661411.1| DNA deoxyribodipyrimidine photolyase, class II [Chlorobium tepidum
TLS]
gi|21646440|gb|AAM71753.1| DNA deoxyribodipyrimidine photolyase, classII [Chlorobium tepidum
TLS]
Length = 459
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
++F EE +RREL++N+CYYN+ YD +G +WAKKTL +H
Sbjct: 285 EAFVEELFIRRELSENYCYYNERYDSFDGIPEWAKKTLMEH 325
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++L + F L G E LP++ EK G VV DF PL+ GW + + L
Sbjct: 79 GLREVETRLRELGVPFTVLYGEPGETLPKYTEKRNAGVVVADFSPLKLVRGWKLAVAQQL 138
>gi|193213030|ref|YP_001998983.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
gi|193086507|gb|ACF11783.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
Length = 459
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 72 QRAVLEVRRVLPKHSKA-VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
Q A E R K S+A ++F EE +RREL++N+CYYN+ YD +G +WAKKTL +H
Sbjct: 268 QHAAFEAAR--SKASEANREAFVEELFIRRELSENYCYYNERYDSFDGIPEWAKKTLLEH 325
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGW 56
GL+EV ++L + F L G + LP++ GA+V DF PL+ W
Sbjct: 79 GLREVETRLRELGVLFTALYGEPGKTLPEYAASRNAGALVADFSPLKLVRDW 130
>gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
Length = 451
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
A D F EE ++RRELADN+C YNK+YD ++G WA +TL HR
Sbjct: 278 SAKDVFLEELVIRRELADNYCLYNKHYDSLKGIHPWAAETLERHR 322
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL +V + + LNI F L G +P+F + GAVV DF PL+ W + + + +
Sbjct: 74 GLMQVEQQLEALNIPFLVLSGNPEREIPRFTASCRAGAVVTDFSPLKISETWKNKVLEHI 133
Query: 65 P 65
P
Sbjct: 134 P 134
>gi|195976053|gb|ACG63558.1| DNA photolyase II [Pseudoplusia includens nucleopolyhedrovirus]
Length = 241
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 8/65 (12%)
Query: 71 IQRAVLEV-----RRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKK 125
+QR VL + + + H ++++ EE +VRRELADN+C+YN NYD + GA +WA
Sbjct: 131 VQRVVLYLLSLDDNKAIKSH---IETYVEECVVRRELADNYCFYNPNYDNLAGAPEWAIA 187
Query: 126 TLNDH 130
TL H
Sbjct: 188 TLKKH 192
>gi|187234360|gb|ACD01432.1| DNA photolyase [Thysanoplusia orichalcea NPV]
Length = 241
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 8/65 (12%)
Query: 71 IQRAVLEV-----RRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKK 125
+QR VL + + + H ++++ EE +VRRELADN+C+YN NYD + GA +WA
Sbjct: 131 VQRVVLYLLSLDDNKAIKSH---IETYVEECVVRRELADNYCFYNPNYDNLAGAPEWAIA 187
Query: 126 TLNDH 130
TL H
Sbjct: 188 TLKKH 192
>gi|9964339|ref|NP_064807.1| putative CPD photolyase [Amsacta moorei entomopoxvirus 'L']
gi|9944548|gb|AAG02731.1|AF250284_25 AMV025 [Amsacta moorei entomopoxvirus 'L']
Length = 453
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 72 QRAVLE---VRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLN 128
QR VLE ++++ + +++DSF EE +R+EL+DNFCYYN NY +WA TL
Sbjct: 261 QRCVLEANKLKKIKDYNIESIDSFIEEIFIRKELSDNFCYYNNNYKSFASCPNWAILTLE 320
Query: 129 DHR 131
H+
Sbjct: 321 IHK 323
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMG-WADTLKK 62
GL E CKK N+ FH L+ + I+ F+ K+K+G V+I+ MPL H + D LKK
Sbjct: 77 GLPEFESQCKKCNVSFH-LLSYNNNIISNFINKYKIGHVIIEQMPLLFHKKYYLDPLKK 134
>gi|145353298|ref|XP_001420955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357465|ref|XP_001422939.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581191|gb|ABO99248.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583183|gb|ABP01298.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 477
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+A+DS+ EE IVRREL+DN+C +N YD ++GA WA+ +L+ H
Sbjct: 299 EAIDSYLEELIVRRELSDNYCLFNPYYDSLQGASQWAQDSLSLH 342
>gi|41023443|emb|CAE52697.1| hypothetical photolyase [Fowlpox virus isolate HP-438/Munich]
Length = 200
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLKEV E+CK+L I F + G I+P V+K+++G ++ DF PLR L
Sbjct: 93 GLKEVAEECKRLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTVISL 152
Query: 65 PKDVPLIQ 72
P ++P IQ
Sbjct: 153 PDNIPFIQ 160
>gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
Length = 450
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
++ EE +VRRELADNFC +N YD + GA WA KTL +HR
Sbjct: 283 AYLEELVVRRELADNFCLHNPQYDSLAGAPAWALKTLGEHR 323
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL +V D L I F L G + +P+ + G VV DF PLR GW L
Sbjct: 74 GLAQVEGDLAALGIPFVLLQGDPGQEIPRLAAELGAGGVVTDFDPLRVKQGWQGAAAHAL 133
Query: 65 PKDVPLIQ---RAVLEVRRVLPKHSKA 88
P V I+ V+ R+V PK A
Sbjct: 134 P--VSFIEVDGHNVVPARQVSPKQEYA 158
>gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3]
gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
chlorochromatii CaD3]
Length = 459
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
P+ K D+F EE IVRREL+DN+C+YN +YD++ G WA++TL H
Sbjct: 278 PQEDK--DAFLEELIVRRELSDNYCHYNASYDRLSGIPAWAQETLARH 323
Score = 41.6 bits (96), Expect = 0.092, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + + LNI F L G E LP++ H VV D+ PL W + + + L
Sbjct: 78 GLQEVETELRALNIPFMVLQGEPSEELPRYAMHHNASMVVADYSPLHLTRCWKNQVAEAL 137
Query: 65 PKDVPLIQ---RAVLEVRRVLPKHSKA 88
VPL + ++ R PK A
Sbjct: 138 --SVPLYEVDAHNIVPCRVASPKQEYA 162
>gi|47834993|gb|AAT39131.1| type II CPD DNA photolyase [Zea mays]
Length = 118
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 98 VRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 1 VRRELADNFCYYQPQYDSLAGAWEWARKTLTDH 33
>gi|346651880|pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
gi|346651881|pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
gi|346651882|pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VLEV + + + +F +E ++ +E++DNFCYYN YD E WAK++LN HR
Sbjct: 297 QRVVLEVEKA-ESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHR 355
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+E+ + I FL G E + +FV+ + G +V DF PLR W + + +
Sbjct: 93 GLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI 152
Query: 65 PKDVPLIQRAVLEVRRVLP------KHSKAVDSF 92
+P + ++ V+P KH A +F
Sbjct: 153 --SIPFFE---VDAHNVVPCWEASQKHEYAAHTF 181
>gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
Length = 464
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR VLEV + + + +F +E ++ +E++DNFCYYN YD E WAK++LN HR
Sbjct: 279 QRVVLEVEKA-ESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHR 337
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+E+ + I FL G E + +FV+ + G +V DF PLR W + + +
Sbjct: 75 GLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI 134
Query: 65 PKDVPLIQRAVLEVRRVLP------KHSKAVDSF 92
+P + ++ V+P KH A +F
Sbjct: 135 --SIPFFE---VDAHNVVPCWEASQKHEYAAHTF 163
>gi|451946553|ref|YP_007467148.1| Deoxyribodipyrimidine photo-lyase type II [Desulfocapsa sulfexigens
DSM 10523]
gi|451905901|gb|AGF77495.1| Deoxyribodipyrimidine photo-lyase type II [Desulfocapsa sulfexigens
DSM 10523]
Length = 459
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR EV + P + +++ EE I+RREL+DNFCYY+ +YD+ DWA K+L+ HR
Sbjct: 266 QRVAWEVEKS-PADLENKEAYLEELIIRRELSDNFCYYSHDYDRCTTFPDWAGKSLDIHR 324
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGW-ADTLK 61
GL+E+ +K I F+ L G LP F++K ++ DF PLR W DTL+
Sbjct: 79 GLEELQHTLQKAAIGFYLLHGAPDIALPPFLKKINPALLITDFDPLRIKKQWKKDTLQ 136
>gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
BAA-798]
gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
BAA-798]
Length = 449
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 70 LIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
L++RA L P +++ EE IVR+EL+DNFC +N +Y ++GA +W ++TL
Sbjct: 261 LLERAKLAEHSGQPSAYDGMNALLEEMIVRKELSDNFCLHNPHYKSLQGAPEWGRQTLEA 320
Query: 130 HR 131
HR
Sbjct: 321 HR 322
>gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
Length = 447
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 86 SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
S+ V++ EE IVRREL+DNFC Y +YD ++ A DWA +TL HR
Sbjct: 276 SEDVEAMLEELIVRRELSDNFCLYCASYDTLDAAPDWAHRTLEKHR 321
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWAD 58
GL++V LNI F L G + QF+ + + G VV DF PLR W D
Sbjct: 74 GLEQVARKLDGLNIPFLLLEGEPRHSMLQFIAQEQTGCVVCDFDPLRIKRQWFD 127
>gi|255076989|ref|XP_002502150.1| predicted protein [Micromonas sp. RCC299]
gi|226517415|gb|ACO63408.1| predicted protein [Micromonas sp. RCC299]
Length = 645
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
P+ ++VD F +E +VRRELA NFC N YD EG +WA++TL H
Sbjct: 418 PELRRSVDVFLDELVVRRELAINFCLNNPAYDAYEGVPEWARRTLATH 465
>gi|401402998|ref|XP_003881384.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
Length = 636
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 71 IQRAVLEVRRVLPKHS-----KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKK 125
+QR ++EV ++ + V +F +E +VR +L+DNF ++N +YD ++GA DWAK+
Sbjct: 342 VQRCLMEVSKLKDTTGDRAVHEGVRAFIDEVVVRSQLSDNFVFFNPHYDDIKGAPDWAKQ 401
Query: 126 TLNDH 130
TL H
Sbjct: 402 TLEKH 406
>gi|288573172|ref|ZP_06391529.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568913|gb|EFC90470.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 448
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
D+F EEA+VRRELA+NFC Y YD+ E +W +K L+ HR
Sbjct: 281 DAFVEEAMVRRELAENFCLYEPLYDRYEALPEWGRKALDHHR 322
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTL 60
GL E ++ KLN+ F +G E LP + +K +V DF PLR GW +++
Sbjct: 80 GLTETAKELSKLNVSFKIPLGEPKEKLPLYAKKRDPAVLVTDFSPLRHQKGWIESV 135
>gi|293652307|gb|ADE60792.1| CPD photolyase [Spodoptera exigua]
Length = 162
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 36/46 (78%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKV 116
+QR L V+ KH+++V++F EEAIVRRELADNFC+Y ++YD +
Sbjct: 117 VQRVALCVQEHKGKHTESVNAFLEEAIVRRELADNFCFYCEHYDSI 162
>gi|221505029|gb|EEE30683.1| DNA photolyase, putative [Toxoplasma gondii VEG]
Length = 631
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 71 IQRAVLEVRRVLPKHS-----KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKK 125
+QR +LEV ++ + + V SF +E +VR +L+DNF ++N +YD ++GA WA++
Sbjct: 334 VQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQ 393
Query: 126 TLNDH 130
TLN H
Sbjct: 394 TLNIH 398
>gi|221481951|gb|EEE20317.1| DNA photolyase, putative [Toxoplasma gondii GT1]
Length = 631
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 71 IQRAVLEVRRVLPKHS-----KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKK 125
+QR +LEV ++ + + V SF +E +VR +L+DNF ++N +YD ++GA WA++
Sbjct: 334 VQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQ 393
Query: 126 TLNDH 130
TLN H
Sbjct: 394 TLNIH 398
>gi|237837047|ref|XP_002367821.1| DNA photolyase, putative [Toxoplasma gondii ME49]
gi|211965485|gb|EEB00681.1| DNA photolyase, putative [Toxoplasma gondii ME49]
Length = 631
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 71 IQRAVLEVRRVLPKHS-----KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKK 125
+QR +LEV ++ + + V SF +E +VR +L+DNF ++N +YD ++GA WA++
Sbjct: 334 VQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQ 393
Query: 126 TLNDH 130
TLN H
Sbjct: 394 TLNIH 398
>gi|324506249|gb|ADY42672.1| Deoxyribodipyrimidine photo-lyase [Ascaris suum]
Length = 549
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNK-NYDKVEGAFDWAKKTLNDHR 131
PKH A+DSF EE +VRR+L+ NF YY K NYD ++ DWA+KTL H+
Sbjct: 282 PKH--AIDSFIEELLVRRDLSHNFVYYAKDNYDSLDCLPDWAQKTLKQHK 329
>gi|218887026|ref|YP_002436347.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757980|gb|ACL08879.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 494
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 29/41 (70%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
SF EE IVRRELADNFC + ++YD V DWA TL+ HR
Sbjct: 316 SFLEELIVRRELADNFCLHAQDYDAVTCFPDWALATLDKHR 356
>gi|310779936|ref|YP_003968268.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
DSM 2926]
gi|309749259|gb|ADO83920.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
DSM 2926]
Length = 459
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 85 HSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEG-AFDWAKKTLNDHR 131
+S+++++F EE I+RREL+ NF YYN+ YDK +G ++ WA +TL HR
Sbjct: 286 NSESIEAFLEELIIRRELSHNFIYYNERYDKWDGISYSWAYETLEKHR 333
>gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeobacteroides DSM 266]
gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeobacteroides DSM 266]
Length = 468
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+F EE I+RREL+DNFC YN +YD+ EG WAK+TL H
Sbjct: 294 AFLEELIIRRELSDNFCNYNPSYDRFEGIPAWAKQTLLLH 333
>gi|256828229|ref|YP_003156957.1| deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
4028]
gi|256577405|gb|ACU88541.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
4028]
Length = 452
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA LE + + VD+F +E IVRREL+DNFC + YD EG WAK++L+ H
Sbjct: 261 QRAALETQ-ACGLAGENVDAFLDELIVRRELSDNFCLHTPGYDTEEGFPAWAKESLHKH 318
>gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
DSM 12260]
gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
DSM 12260]
Length = 464
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 72 QRAVLEVRRV-LPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA EV R P + ++F EE +VR ELA+NFC + YD VE DWA+KTL H
Sbjct: 275 QRAAWEVLRADAPPEDR--EAFLEELVVRGELAENFCLHTPGYDTVEAFPDWARKTLAAH 332
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADT-LKKD 63
GL+E + +I L G E +F +H++ V DF PLR GW + L++
Sbjct: 85 GLRETARELAARDIPLFLLRGDPPEEAARFAIRHRVALTVTDFDPLRVRRGWTEAFLERT 144
Query: 64 LPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRREL 102
+ + R V+ R V PK + A +RR+L
Sbjct: 145 EGTALEVDARNVVPCRFVSPKREWSA------ATLRRKL 177
>gi|325187408|emb|CCA21946.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 532
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 75 VLEVRRVLPKHSK-AVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDHR 131
L V+ + ++SK + D+F EE IVRREL+ NF YN N YD EG ++AKKTLNDHR
Sbjct: 345 ALLVKNIDNENSKNSRDAFLEEMIVRRELSVNFVVYNPNFYDSFEGIPNFAKKTLNDHR 403
>gi|387152011|ref|YP_005700947.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
Length = 478
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR V V + A SF EE +VRRELADNFC + +YD V WA+ TL+ HR
Sbjct: 276 QRVVQRVTASTAGSADARASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHR 335
>gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris
str. Hildenborough]
Length = 474
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR V V + A SF EE +VRRELADNFC + +YD V WA+ TL+ HR
Sbjct: 272 QRVVQRVTASTAGSADARASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHR 331
>gi|219118604|ref|XP_002180071.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408328|gb|EEC48262.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 511
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLND 129
QR L V+ L KH+ +F EE ++RREL+DN YY+ N YD +E A WA+++L
Sbjct: 290 FQRLALNVK-ALNKHANGAAAFIEEGVIRRELSDNMLYYSPNDYDSLETAAGWARESLQL 348
Query: 130 H 130
H
Sbjct: 349 H 349
>gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4]
gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris
DP4]
Length = 473
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
QR V V + A SF EE +VRRELADNFC + +YD V WA+ TL+ HR
Sbjct: 276 QRVVQRVTASTAGSADARASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHR 335
>gi|359457902|ref|ZP_09246465.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 470
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 89 VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
VD++ EE IVRRELA NF YY +YD +WAK TL++HR
Sbjct: 288 VDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNWAKTTLDNHR 330
>gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 452
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+ VLEV + K+ + V SF E IV REL+ NFC+YN Y++ EG WA++TL +H+
Sbjct: 268 KIVLEVLKHYDKNDENVVSFFNELIVWRELSRNFCWYNPLYNQYEGIPQWARQTLEEHK 326
>gi|340384749|ref|XP_003390873.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like, partial
[Amphimedon queenslandica]
Length = 154
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 KLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDLPK-DVPLIQ 72
KL I FH L+G A LP F+ K + VV DF PLR +GW +L K VPL+Q
Sbjct: 4 KLKIPFHLLLGKAQSCLPPFIAKESVSVVVCDFSPLRVPLGWVKETGAELDKIKVPLVQ 62
>gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273]
gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM
273]
Length = 495
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
P+ SKA +F EE IVRREL+DN+C YN YD +G WA+ +L H
Sbjct: 322 PEESKA--AFLEELIVRRELSDNYCAYNSRYDSFDGLPIWAQDSLARH 367
>gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
DSM 5219]
gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
DSM 5219]
Length = 457
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
++ EE +VRRELA NF YY+K+YD ++ DWAKKTL +HR
Sbjct: 281 AYMEELVVRRELAMNFVYYDKDYDSLDCLPDWAKKTLAEHR 321
>gi|51246428|ref|YP_066312.1| DNA photolyase [Desulfotalea psychrophila LSv54]
gi|50877465|emb|CAG37305.1| probable DNA photolyase [Desulfotalea psychrophila LSv54]
Length = 458
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 79 RRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
R LP +K + F EE IVRREL+DNFC Y YD G WA+K+L+ HR
Sbjct: 278 RDKLPIETK--EPFLEELIVRRELSDNFCLYEPLYDTFAGFPAWARKSLDQHR 328
>gi|395645794|ref|ZP_10433654.1| DNA photolyase FAD-binding [Methanofollis liminatans DSM 4140]
gi|395442534|gb|EJG07291.1| DNA photolyase FAD-binding [Methanofollis liminatans DSM 4140]
Length = 444
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 29/43 (67%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
A ++ EEAIVRRELA NF YN YD +G WAK+TL DH
Sbjct: 274 AARAYLEEAIVRRELAVNFVRYNPGYDAYDGLPQWAKQTLADH 316
>gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 465
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 89 VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
VD++ EE IVRRELA NF YY +YD +WAK TL++HR
Sbjct: 288 VDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNWAKTTLDNHR 330
>gi|47834995|gb|AAT39132.1| type II CPD DNA photolyase [Picea glauca]
Length = 118
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 98 VRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
VRREL+DNFCYY NYD ++GA++WA+ TL H
Sbjct: 1 VRRELSDNFCYYQPNYDSLQGAYEWARSTLLAH 33
>gi|113195453|ref|YP_717590.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
gi|94958994|gb|ABF47395.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
Length = 372
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GLK V +C +LNI FH L G L +V+ + + AVV DF PLR W T+K L
Sbjct: 177 GLKSVQRECHELNIGFHVLDGSGDLTLNDWVQTNNISAVVCDFNPLRVVRDWVATVKSQL 236
Query: 65 PKDVPLIQ 72
V Q
Sbjct: 237 APHVFFAQ 244
>gi|374300240|ref|YP_005051879.1| DNA photolyase FAD-binding protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332553176|gb|EGJ50220.1| DNA photolyase FAD-binding protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 465
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 72 QRAVLEVRRV-LPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR L V + P+ K D+F E+ +VRRELA+NFC + YD E DWA++TL+ H
Sbjct: 266 QRVALVVIQADAPQEDK--DAFLEQLVVRRELAENFCLHEPAYDSAESFPDWARRTLDAH 323
Query: 131 R 131
+
Sbjct: 324 Q 324
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV + + I F L+G E++P +GA++ DF PLR GW + ++
Sbjct: 76 GLREVEHGLEAIGIPFFLLLGDPAEVIPDLARYLAVGAIITDFDPLRIKRGWLKRIAAEV 135
Query: 65 PKDVPLI-QRAVLEVRRVLPKHSKAVDSF 92
V + R ++ R V K A +F
Sbjct: 136 QIAVEEVDSRNIVPCRAVSEKKEWAARTF 164
>gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeovibrioides DSM 265]
gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeovibrioides DSM 265]
Length = 452
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
P+ SKA +F EE IVRREL+DN+C + + YD EG WA+++L H
Sbjct: 279 PEESKA--AFLEELIVRRELSDNYCAHQEQYDAYEGLPGWARQSLEQH 324
>gi|357633977|ref|ZP_09131855.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
gi|357582531|gb|EHJ47864.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
Length = 462
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QRA L+ + ++F EE +VRRELADN+C + YD + WA+KTL H
Sbjct: 267 QRAALDALEAKKRAPAGAEAFLEELVVRRELADNYCLHEPAYDTLAALPAWAQKTLGAH 325
>gi|220931344|ref|YP_002508252.1| deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
gi|219992654|gb|ACL69257.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
Length = 466
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
K F EE ++RREL+ NF YYN +YD ++ DWAKKTL +H
Sbjct: 289 KGFKEFFEELVIRRELSFNFVYYNPDYDSIKSLPDWAKKTLKEH 332
>gi|116625724|ref|YP_827880.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
usitatus Ellin6076]
gi|116228886|gb|ABJ87595.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
usitatus Ellin6076]
Length = 456
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 76 LEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
L VR H D F EE IVRRELA NF Y D ++ DWA+KT+ DHR
Sbjct: 266 LAVREHAAAHKLIADEFLEELIVRRELAHNFARYAPRLDSLDVLPDWARKTIEDHR 321
>gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1]
gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum
hungatei JF-1]
Length = 448
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 80 RVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
RV+ ++F E+ IVRREL+ NF +YN YD EG +W +K+L HR
Sbjct: 269 RVMEHPGPGTNAFLEQLIVRRELSHNFVWYNPLYDHYEGLPEWTRKSLEKHR 320
>gi|47834997|gb|AAT39133.1| type II CPD DNA photolyase [Marchantia polymorpha]
Length = 118
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 98 VRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
VRREL DN+CYY NYD ++GAF WA+++L H
Sbjct: 1 VRRELGDNYCYYQPNYDNLQGAFPWARESLQKH 33
>gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
Ice1]
gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
Ice1]
Length = 498
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 81 VLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
V P + + +F EE IVRRELA NF YYN YD+ WA+ TL+ HR
Sbjct: 310 VGPSPNPGLAAFLEELIVRRELAMNFAYYNPAYDQFAALPAWAQATLHSHR 360
>gi|339500100|ref|YP_004698135.1| DNA photolyase FAD-binding protein [Spirochaeta caldaria DSM 7334]
gi|338834449|gb|AEJ19627.1| DNA photolyase FAD-binding protein [Spirochaeta caldaria DSM 7334]
Length = 463
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 65 PKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAK 124
P ++ L + L + R+ + ++ EE IVRRELA NFCYYN YD G WA
Sbjct: 271 PLEMALTLQQELGLHRISACNHPGAAAYLEELIVRRELAINFCYYNNAYDTPAGLPSWAI 330
Query: 125 KTLND 129
+TL +
Sbjct: 331 QTLTE 335
>gi|188579437|ref|YP_001922882.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
gi|179342935|gb|ACB78347.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
Length = 476
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
++ EE IVRRELA N YY NYD E A WA+KTL+ HR
Sbjct: 305 AYLEELIVRRELAMNHIYYEPNYDSYEAAPAWARKTLDAHR 345
>gi|308804061|ref|XP_003079343.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
gi|116057798|emb|CAL54001.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
Length = 529
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 71 IQRAVLEVRRVLPKHSK---AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTL 127
I R LE R + + ++D F +E IVRRELA NF N NYD +G WAK+TL
Sbjct: 316 IARKTLEFRDAHKEDADVCASIDVFLDELIVRRELAINFALRNPNYDTYDGLPTWAKETL 375
Query: 128 NDH 130
H
Sbjct: 376 EKH 378
>gi|383789019|ref|YP_005473588.1| deoxyribodipyrimidine photo-lyase [Caldisericum exile AZM16c01]
gi|381364656|dbj|BAL81485.1| deoxyribodipyrimidine photo-lyase [Caldisericum exile AZM16c01]
Length = 448
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
I+ A+ + + +H K ++F EE I+RRELA NF YYN YD++EG W +TL H
Sbjct: 264 IEIALSVLESSVEQHEK--EAFLEELIIRRELAFNFVYYNPRYDRLEGLEHWEYETLQRH 321
Query: 131 R 131
+
Sbjct: 322 K 322
>gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
Length = 486
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+V+S+ EE IVRRELA NF N YD + G DWA+ TL H
Sbjct: 306 SVESYLEEMIVRRELAINFVARNPKYDSLAGCPDWARATLAKH 348
>gi|145346558|ref|XP_001417753.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577981|gb|ABO96046.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 467
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+VD F +E IVRRELA NF N YD +G +WA++TL HR
Sbjct: 310 SVDVFLDELIVRRELAVNFALRNPKYDSYDGLPEWARETLERHR 353
>gi|300708917|ref|XP_002996629.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
gi|239605945|gb|EEQ82958.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
Length = 473
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 76 LEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
L + K +D + E + RE +++FCY+NK+YD + GA +WA+ +L++H
Sbjct: 279 LAYEKFYKKDKDNLDGYVAEIFIWRETSEHFCYHNKDYDNIMGALEWARDSLHEH 333
>gi|27262422|gb|AAN87492.1| Deoxyribodipyrimidine photolyase [Heliobacillus mobilis]
Length = 257
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+VD++ EE IVRREL+ NF +YN YD+ +WA++TL HR
Sbjct: 88 SVDAYLEELIVRRELSINFVHYNLRYDEFTALPEWARQTLYTHR 131
>gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
Length = 460
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 80 RVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
R+L + +++ EE IVRREL NF +YN +YD E WAKK+L H
Sbjct: 271 RILNSGRTSSEAYLEELIVRRELGINFVFYNTHYDTFECLPGWAKKSLRTH 321
>gi|312143870|ref|YP_003995316.1| DNA photolyase FAD-binding protein [Halanaerobium hydrogeniformans]
gi|311904521|gb|ADQ14962.1| DNA photolyase FAD-binding protein [Halanaerobium hydrogeniformans]
Length = 458
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 61 KKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAF 120
+ DL + Q + E+ ++SK + F EE IVRREL+ NF YYN+NYD G+
Sbjct: 255 QSDLSPYLHFGQISAQEIALRALENSKEAEEFLEELIVRRELSFNFVYYNQNYD---GSL 311
Query: 121 -----DWAKKTLNDH 130
DWA K+L H
Sbjct: 312 KDVLPDWAAKSLKKH 326
>gi|393911740|gb|EJD76434.1| photolyase [Loa loa]
Length = 496
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDHR 131
PK +K D+F EE +VRRELA NF YY ++ YD + +WAKKT+ +HR
Sbjct: 286 PKSAK--DAFLEEMVVRRELAHNFVYYYRDTYDTFDCLPEWAKKTMEEHR 333
>gi|308802307|ref|XP_003078467.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
gi|116056919|emb|CAL53208.1| class II DNA photolyase (ISS), partial [Ostreococcus tauri]
Length = 297
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 72 QRAVLEVRRVLPKHSKAV-DSFCEEAIVRRELADNFCYY--NKNYD 114
QR LE ++ + K S A DSF EE +VRRELADNFCYY + YD
Sbjct: 250 QRCALEAKKAVGKASPAAYDSFFEELVVRRELADNFCYYCPGQKYD 295
>gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
DSM 9941]
gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
DSM 9941]
Length = 464
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 89 VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
V +F EE +VRRELA NF Y NYD +WA+ TL +HR
Sbjct: 288 VGAFLEELVVRRELAVNFVRYTPNYDSYSCLPEWARSTLEEHR 330
>gi|303283462|ref|XP_003061022.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457373|gb|EEH54672.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 457
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
F EE +VR EL+DN+C++ NYD + GA WA ++L H
Sbjct: 289 FVEEVVVRSELSDNYCFHEPNYDNINGASGWAIESLRLH 327
>gi|452819842|gb|EME26893.1| deoxyribodipyrimidine photo-lyase isoform 2 [Galdieria sulphuraria]
Length = 505
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
D+F EE +RREL+ NFCYY YD + WAK+T+++H
Sbjct: 311 DAFIEEVFIRRELSFNFCYYCDKYDAFDCLPTWAKQTMSEH 351
>gi|452819843|gb|EME26894.1| deoxyribodipyrimidine photo-lyase isoform 1 [Galdieria sulphuraria]
Length = 487
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
D+F EE +RREL+ NFCYY YD + WAK+T+++H
Sbjct: 293 DAFIEEVFIRRELSFNFCYYCDKYDAFDCLPTWAKQTMSEH 333
>gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
17093]
gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
17093]
Length = 489
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 75 VLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
LEV+R K + + EE IVRREL NF +Y +YD+ + WA+KTL++HR
Sbjct: 305 ALEVQRA--GAGKNAEVYLEELIVRRELPMNFVFYEPHYDRYDALPAWARKTLDEHR 359
>gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Sphaerochaeta globus str.
Buddy]
gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Sphaerochaeta globus str.
Buddy]
Length = 459
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 53/120 (44%), Gaps = 27/120 (22%)
Query: 23 LIGG---AHEILPQFVEKHKLGAVVIDFMPLRE---------HMGWADTLKKDLPKDVPL 70
L+GG AH+ L QF+E G + P ++ H G +
Sbjct: 220 LVGGEIQAHQKLSQFIESKLSGYAIHRNDPSQQFSSGLSPYLHFGQISAID--------- 270
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
I AV E+ + V F EE IVRRELA NF ++N YD EG WA+K+L H
Sbjct: 271 IYHAVREIE------VEDVPVFLEELIVRRELAYNFVWFNPLYDAYEGLPSWAQKSLAFH 324
>gi|385799701|ref|YP_005836105.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
2228]
gi|309389065|gb|ADO76945.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
2228]
Length = 454
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKV--EGAFDWAKKTLNDHR 131
SF EE IVRRELA NF YYN+NYD + +DWA ++L +H+
Sbjct: 284 SFLEELIVRRELAFNFVYYNQNYDGSLKDILYDWAYQSLMEHQ 326
>gi|374316669|ref|YP_005063097.1| deoxyribodipyrimidine photolyase [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352313|gb|AEV30087.1| deoxyribodipyrimidine photolyase [Sphaerochaeta pleomorpha str.
Grapes]
Length = 509
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 89 VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
V F EE ++RRELA NF YYN YD EG WA+ ++ H+
Sbjct: 327 VAPFLEELVIRRELAMNFVYYNPLYDAYEGLPAWARASMQKHQ 369
>gi|312091466|ref|XP_003146989.1| DNA photolyase 1 [Loa loa]
Length = 261
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDHR 131
PK +K D+F EE +VRRELA NF YY ++ YD + +WAKKT+ +HR
Sbjct: 51 PKSAK--DAFLEEMVVRRELAHNFVYYYRDTYDTFDCLPEWAKKTMEEHR 98
>gi|444917023|ref|ZP_21237131.1| Deoxyribodipyrimidine photolyase, type II [Cystobacter fuscus DSM
2262]
gi|444711669|gb|ELW52608.1| Deoxyribodipyrimidine photolyase, type II [Cystobacter fuscus DSM
2262]
Length = 469
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+SF EE IVRREL NFC + +YD + WA++TL+ HR
Sbjct: 288 ESFLEELIVRRELTQNFCEFTPHYDTYDCLPKWARETLHQHR 329
>gi|429962002|gb|ELA41546.1| deoxyribodipyrimidine photolyase [Vittaforma corneae ATCC 50505]
Length = 456
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 68 VPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTL 127
+ +Q L + R S +F E + RE A++F Y+ KNYD + GA WAK TL
Sbjct: 272 ISALQTIFLTIERYGKDESDNYQAFINEMFIWRETAEHFVYHEKNYDNINGALAWAKNTL 331
Query: 128 NDH 130
H
Sbjct: 332 LYH 334
>gi|355570882|ref|ZP_09042152.1| DNA photolyase FAD-binding [Methanolinea tarda NOBI-1]
gi|354826164|gb|EHF10380.1| DNA photolyase FAD-binding [Methanolinea tarda NOBI-1]
Length = 455
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 80 RVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
RVL + F ++ IVRRELA NF +YN YD +G W +TL H
Sbjct: 268 RVLETQGQGTGEFLDQLIVRRELAINFVHYNPRYDSFQGLPSWVLETLAHH 318
>gi|383790370|ref|YP_005474944.1| deoxyribodipyrimidine photolyase [Spirochaeta africana DSM 8902]
gi|383106904|gb|AFG37237.1| deoxyribodipyrimidine photolyase [Spirochaeta africana DSM 8902]
Length = 466
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 86 SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
S+ VD EE IVRREL+ NF YN+ YD + DWA +TL +H
Sbjct: 288 SEGVDVLFEELIVRRELSCNFTTYNQAYDSPDCLPDWAVRTLAEH 332
>gi|449016433|dbj|BAM79835.1| probable class II DNA photolyase [Cyanidioschyzon merolae strain
10D]
Length = 591
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 79 RRVLPKHSKAVDSFCEEAIVRRELADNFCYYN-KNYDKVEGAFDWAKKTLNDHR 131
R+ P+ S+ D+F EE IVRREL+ N C+Y +YDK++ +W +T +HR
Sbjct: 384 RKETPRESR--DAFIEELIVRRELSFNHCWYRPDDYDKLDSLPEWVHRTYAEHR 435
>gi|391335982|ref|XP_003742363.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Metaseiulus
occidentalis]
Length = 453
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 78 VRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+R K S +F E RE A++FC + +NYD +EGA WAK TL H+
Sbjct: 256 AQRFKEKKSDNYHAFLREVFAFRETAEHFCLHERNYDSLEGALPWAKDTLTKHK 309
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKD- 63
GL+E E C++LNI F ++ L +FV++ + +++DF PLRE + + ++
Sbjct: 69 GLEEDEEACRRLNIYFSLIVD-----LDRFVKQKNIDCIILDFSPLRECLAYRGEVEAYC 123
Query: 64 LPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVE 117
+ K + L V + ++P AV +A VR EL ++F + ++Y +E
Sbjct: 124 IEKRISL---RVCDANNLVPCKILAVYKKTSKA-VRSELFEHFPKFLRDYKVLE 173
>gi|402581048|gb|EJW74997.1| hypothetical protein WUBG_14096, partial [Wuchereria bancrofti]
Length = 182
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDHR 131
PK +K D+F EE +VRRELA NF YY ++ YD + +WAKK +++HR
Sbjct: 89 PKSAK--DAFLEELVVRRELAHNFVYYYRDTYDTFDCLPEWAKKAMDEHR 136
>gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 453
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 35 VEKHK-LGAVVIDFMPLREHMGWADTLKKDLPKDVPLI---QRAVLEVRRVLPKH-SKAV 89
VE H+ L A + R H D K+ L P + Q + LE+ +H
Sbjct: 224 VEAHRRLDAFITSGTLERFHEERNDPSKEGLSCMSPYLHYGQISALEIALRASEHPGPGC 283
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
++F EE I+RRELA NF +YN+ YD E WA++ L H
Sbjct: 284 EAFLEELIIRRELAFNFVFYNRFYDSFEALPRWAREDLEAH 324
>gi|402466497|gb|EJW01974.1| deoxyribodipyrimidine photolyase [Edhazardia aedis USNM 41457]
Length = 460
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
R +LE + ++ ++ + E RE+A++FC + K YD ++GA WA++TLN H+
Sbjct: 254 RLMLESLKKFEHSNENLECWISEMFFWREIAEHFCMHTKEYDSIKGALPWAQETLNLHK 312
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLK 61
GL E+H+DC+KLN L L +F K + +V +F PLRE++ + + +K
Sbjct: 69 GLLEMHKDCEKLNYNIFIL-----NSLSKFKFKFDIDCIVTEFSPLREYIEFQNEIK 120
>gi|68304204|ref|YP_249672.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973033|gb|AAY83999.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 512
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL E+ E+C +L+I F L A +L +V KH + AVV DF PL+ + + ++L
Sbjct: 113 GLIELSEECAELDITFVILDDSADVVLIDWVRKHDICAVVCDFNPLQLQIKSTVNILQNL 172
Query: 65 PKDVPLIQRAVLEVRRVLP 83
P DV Q ++ V+P
Sbjct: 173 PADVYFAQ---VDAHNVVP 188
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 70 LIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
+ +++VL+ + K ++ F E + RRE ADNFCY+N NY A K+ +
Sbjct: 320 VTKKSVLQKTVFIRKLKNNIEKFIENCLYRREFADNFCYFNLNYITFNAASPQIKRYIAK 379
Query: 130 H 130
H
Sbjct: 380 H 380
>gi|170750160|ref|YP_001756420.1| deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
JCM 2831]
gi|170656682|gb|ACB25737.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
JCM 2831]
Length = 462
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 76 LEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAF-DWAKKTLNDH 130
L VR S ++ EE IVRRELA N YY + YD + A DWA+KTL +H
Sbjct: 276 LAVREAKVGDSDDRGAYLEELIVRRELAMNHVYYTEGYDDYDRAVPDWARKTLAEH 331
>gi|391332116|ref|XP_003740484.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Metaseiulus
occidentalis]
Length = 447
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
Q+ + + K ++ SF E +E +++FC + KNYD ++GA WAK +LN HR
Sbjct: 251 QKVIYLATKRFGKKNENYISFINEIFAVKENSEHFCLHEKNYDNIDGALQWAKDSLNLHR 310
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLRE 52
GL+E+ E C++ NI F + + L +FVEK + +++DF PLRE
Sbjct: 72 GLQEMEEACREHNIYFDLI-----DNLEKFVEKRDIDCIIMDFSPLRE 114
>gi|115379247|ref|ZP_01466362.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|310819481|ref|YP_003951839.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|115363746|gb|EAU62866.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|309392553|gb|ADO70012.1| Deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
Length = 469
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 24/41 (58%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
D+F EE IVRRELA NF Y YD WA+KTL H
Sbjct: 288 DTFLEELIVRRELAQNFAEYTPQYDDYTSLPAWARKTLAAH 328
>gi|325180777|emb|CCA15187.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 779
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 73 RAVLEVRRVLPKHSKAV-DSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDH 130
R L ++ SKA D+F EE IVRREL+ N +N + YD +E ++AKKTL DH
Sbjct: 606 RIALATHKIKAASSKASRDAFLEEMIVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDH 665
>gi|325180778|emb|CCA15188.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 758
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 73 RAVLEVRRVLPKHSKAV-DSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDH 130
R L ++ SKA D+F EE IVRREL+ N +N + YD +E ++AKKTL DH
Sbjct: 585 RIALATHKIKAASSKASRDAFLEEMIVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDH 644
>gi|386391744|ref|ZP_10076525.1| deoxyribodipyrimidine photolyase [Desulfovibrio sp. U5L]
gi|385732622|gb|EIG52820.1| deoxyribodipyrimidine photolyase [Desulfovibrio sp. U5L]
Length = 462
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
++F EE +VRRELADN+C + YD WA+KTL H
Sbjct: 285 EAFLEELVVRRELADNYCLHEPAYDTFAVLPAWARKTLLAH 325
>gi|325180776|emb|CCA15186.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 737
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 73 RAVLEVRRVLPKHSKAV-DSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDH 130
R L ++ SKA D+F EE IVRREL+ N +N + YD +E ++AKKTL DH
Sbjct: 564 RIALATHKIKAASSKASRDAFLEEMIVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDH 623
>gi|325180775|emb|CCA15185.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 716
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 73 RAVLEVRRVLPKHSKAV-DSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDH 130
R L ++ SKA D+F EE IVRREL+ N +N + YD +E ++AKKTL DH
Sbjct: 543 RIALATHKIKAASSKASRDAFLEEMIVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDH 602
>gi|116750550|ref|YP_847237.1| DNA photolyase, FAD-binding [Syntrophobacter fumaroxidans MPOB]
gi|116699614|gb|ABK18802.1| Deoxyribodipyrimidine photo-lyase type II [Syntrophobacter
fumaroxidans MPOB]
Length = 468
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
+F E+ +VRRELA NF ++ +NYD E WA++TL HR
Sbjct: 290 AFLEQLLVRRELALNFVHHTRNYDSYECLPRWARETLARHR 330
>gi|170744406|ref|YP_001773061.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
gi|168198680|gb|ACA20627.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
Length = 465
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 76 LEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAF-DWAKKTLNDH 130
L+VR + S+ EE IVRRELA N +Y YD+ E A DWA++ L +H
Sbjct: 279 LKVRAAAAGGPEDKASYLEELIVRRELAMNHVHYQPGYDRYESAVPDWARRALAEH 334
>gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Granulicella tundricola
MP5ACTX9]
gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Granulicella tundricola
MP5ACTX9]
Length = 470
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
PK A DS+ E I RELA NF ++ YD E A +WA+KT+ +H
Sbjct: 289 PKLQSARDSYFNELIAWRELAVNFVRFSSVYDTAECAENWAQKTIAEH 336
>gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
str. Marburg]
gi|313104153|sp|P58818.2|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
str. Marburg]
Length = 444
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
F EE IVRREL+ NF +Y+ NY + +WA+KTL +H
Sbjct: 277 FLEELIVRRELSMNFVHYSDNYSSIRCLPEWAQKTLMEH 315
>gi|170595219|ref|XP_001902292.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
gi|158590106|gb|EDP28860.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
Length = 442
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDHR 131
PK +K D+F EE +VRRELA NF Y ++ YD + +WAKK +++HR
Sbjct: 242 PKSAK--DAFLEELVVRRELAHNFVXYXRDTYDTFDCLPEWAKKAMDEHR 289
>gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein
[Desulfobacterium autotrophicum HRM2]
gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein
[Desulfobacterium autotrophicum HRM2]
Length = 453
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 75 VLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
L+++ + +A ++ EE IVRRELA NF Y+N YD + W KTL +H
Sbjct: 270 ALKIKACKNEAQEAAAAYLEELIVRRELAANFVYFNPYYDSLGCLPAWPTKTLAEH 325
>gi|74229751|ref|YP_308955.1| photolyase [Trichoplusia ni SNPV]
gi|72259665|gb|AAZ67436.1| photolyase [Trichoplusia ni SNPV]
Length = 502
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 72 QRAVLEVRRVLPKHS------------KAVDSFCEEAIVRRELADNFCYYNKNYD 114
QR + +R + K S K ++ F E + RRE ADNFCYYN NY+
Sbjct: 300 QRVIYHLRFCITKQSVLQKTISKVKLEKNINRFIENCLYRREFADNFCYYNSNYN 354
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL + E+C +L+I F L A +L +V KH + AV+ D+ PL+ M T+ ++L
Sbjct: 103 GLIGLSEECVELDITFVILDDRADVVLIDWVLKHDICAVITDYNPLQLQMNVVVTVLQNL 162
Query: 65 PKDVPLIQRAVLEVRRVLP 83
P ++ Q ++ V+P
Sbjct: 163 PAEIYFAQ---VDAHNVVP 178
>gi|15678924|ref|NP_276041.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2507184|sp|P12769.2|PHR_METTH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|639674|dbj|BAA06411.1| photolyase [Methanothermobacter thermautotrophicus]
gi|2622000|gb|AAB85402.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 445
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
F EE IVRREL+ NF +Y+ +Y + +WA++TL DH
Sbjct: 277 FLEELIVRRELSMNFVHYSDSYSSISCLPEWAQRTLMDH 315
>gi|269122091|ref|YP_003310268.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
33386]
gi|268615969|gb|ACZ10337.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
33386]
Length = 453
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 97 IVRRELADNFCYYNKNYDKVEG-AFDWAKKTLNDHR 131
IVRRELA NF YYN++YDK + + WA +T+N H+
Sbjct: 292 IVRRELAINFIYYNQDYDKFQNMTYLWAYETMNKHK 327
>gi|383765520|ref|YP_005444501.1| deoxyribodipyrimidine photo-lyase [Phycisphaera mikurensis NBRC
102666]
gi|381385788|dbj|BAM02604.1| deoxyribodipyrimidine photo-lyase [Phycisphaera mikurensis NBRC
102666]
Length = 473
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
D F EE IVRREL NF ++ ++YDK +A++TL++HR
Sbjct: 296 DDFLEELIVRRELTHNFVHFEEDYDKFSQLPAFARETLDEHR 337
>gi|374313608|ref|YP_005060038.1| DNA photolyase FAD-binding protein [Granulicella mallensis
MP5ACTX8]
gi|358755618|gb|AEU39008.1| DNA photolyase FAD-binding protein [Granulicella mallensis
MP5ACTX8]
Length = 487
Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 83 PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
PK + A DS+ E IV RELA NF Y YD A +WA+ T+ +H
Sbjct: 310 PKLAAARDSYFNELIVWRELAVNFVRYQPEYDSPGCADNWARATIAEH 357
>gi|149175245|ref|ZP_01853867.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
gi|148845854|gb|EDL60195.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
Length = 497
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 86 SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
S+ + F +E I REL N C+ +YD+ E DWA+ TL +H
Sbjct: 317 SETAEGFLDELITWRELGYNMCWQRDDYDQYESLPDWARTTLEEH 361
>gi|428171171|gb|EKX40090.1| hypothetical protein GUITHDRAFT_164772 [Guillardia theta CCMP2712]
Length = 779
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 22 FLIGG---AHEILPQFVEKHKLGAVVIDFM------PLREHMGWADTLKKDLPKDVPLIQ 72
FL GG A E+L +F+ G + ++ LR+ + L+ V +
Sbjct: 421 FLQGGETRAEELLSKFLTSGADGKAINEYQLKRNDPSLRKQSHLSPYLQFGQISPVRIAM 480
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYD 114
+A E P+H + VD F EE IVRRE A NF +N +YD
Sbjct: 481 KA-REFASKFPEHRQDVDVFLEELIVRREFAVNFVLHNPSYD 521
>gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
AK-01]
gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
AK-01]
Length = 456
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 75 VLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
L V+ + +A ++ E+ IVRRELA NF ++ NYD+ WA+KTL +
Sbjct: 272 ALRVKNLKDADPEAQAAYLEQIIVRRELAMNFVHFTPNYDQYACLPTWAQKTLKE 326
>gi|197105770|ref|YP_002131147.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
zucineum HLK1]
gi|196479190|gb|ACG78718.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
zucineum HLK1]
Length = 455
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
V ++ EE IVRRELA N + YD+ E +WA++TL DH
Sbjct: 281 GVATYLEELIVRRELAMNHAFQAPAYDRYEVLPEWARQTLADH 323
>gi|283778509|ref|YP_003369264.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
gi|283436962|gb|ADB15404.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
Length = 502
Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 86 SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
S A + F +E I RE+ NFC N N+D+ E W +KTL+ H
Sbjct: 320 SAACEGFLDELITWREIGFNFCSRNDNFDQDESLPTWVQKTLDKH 364
>gi|310658527|ref|YP_003936248.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [[Clostridium] sticklandii]
gi|308825305|emb|CBH21343.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [[Clostridium] sticklandii]
Length = 447
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 80 RVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDK-VEGAF-DWAKKTLNDHR 131
+++ K+ F EE I RRELA N+ YYNKNYD +E WA +L H+
Sbjct: 270 KIIKSDIKSKKDFLEELITRRELAINYIYYNKNYDSDIEKILPSWAYDSLISHQ 323
>gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
51196]
gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
51196]
Length = 470
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 87 KAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+A DS+ E I R++A NF + YD E A +WA+KTL +H
Sbjct: 292 EACDSYLNELIAWRDMAVNFVKFVPGYDSFEAAPEWAQKTLREH 335
>gi|187234362|gb|ACD01433.1| DNA photolyase I [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|187234370|gb|ACD01437.1| DNA photolyase I [Plusia acuta nucleopolyhedrovirus]
Length = 247
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 70 LIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
+ +++VL+ + K ++ F E + RRE ADNFCY+N NY A K+ +
Sbjct: 141 VTKKSVLQKTVFIRKLKNNIEKFIENCLYRREFADNFCYFNLNYITFNAASPQIKRYIAK 200
Query: 130 H 130
H
Sbjct: 201 H 201
>gi|24586404|ref|NP_724615.1| CG18853 [Drosophila melanogaster]
gi|21627731|gb|AAG22302.2| CG18853 [Drosophila melanogaster]
gi|162944954|gb|ABY20546.1| TA01342p [Drosophila melanogaster]
Length = 330
Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 103 ADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
ADNFC+YN++YD ++G WA +TL+ HR
Sbjct: 170 ADNFCFYNEHYDSLKGLSSWAYQTLDAHR 198
>gi|449016982|dbj|BAM80384.1| similar to DNA photolyase [Cyanidioschyzon merolae strain 10D]
Length = 690
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFD-WAKKTLND 129
RA +E+ P K + E + RRELA NF YNK YD +GA WA+++L D
Sbjct: 476 RAAVEIASQQPDVRKFM-----ENMYRRELAYNFVMYNKRYDSFDGAVPVWARRSLYD 528
>gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
versatilis Ellin345]
gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
versatilis Ellin345]
Length = 446
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 82 LPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+P+ +K D F ++ I RELA N ++N YD +E +WA KTL +H
Sbjct: 257 VPREAK--DDFLDQVITWRELAINMVHFNPLYDTLECGENWAHKTLGEH 303
>gi|383455823|ref|YP_005369812.1| deoxyribodipyrimidine photolyase [Corallococcus coralloides DSM
2259]
gi|380733831|gb|AFE09833.1| deoxyribodipyrimidine photolyase [Corallococcus coralloides DSM
2259]
Length = 470
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDK--VEGAFDWAKKTLNDHR 131
K AV SF EE +VRREL N+C++ + V+ WA++TL+ HR
Sbjct: 295 KDHPAVQSFVEELLVRRELGFNYCFHTPGPKQLSVDSLPPWARETLSRHR 344
>gi|390959171|ref|YP_006422928.1| deoxyribodipyrimidine photolyase [Terriglobus roseus DSM 18391]
gi|390414089|gb|AFL89593.1| deoxyribodipyrimidine photolyase [Terriglobus roseus DSM 18391]
Length = 561
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 73 RAVLEVRRVL---PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLND 129
R LE+ + PK ++ DSF +E + REL + ++ NYD E A WA+KT+
Sbjct: 370 RIYLEIEKAAAANPKLRESADSFLDEMVTWRELCIAWVKWDPNYDNPETAEAWARKTVEA 429
Query: 130 H 130
H
Sbjct: 430 H 430
>gi|393769050|ref|ZP_10357579.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. GXF4]
gi|392725510|gb|EIZ82846.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. GXF4]
Length = 462
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKVEGAF-DWAKKTLNDH 130
++ EE IVRRELA N +Y + YD + A DWA+KTL +
Sbjct: 291 AYLEELIVRRELAMNHVFYTEGYDDYDKAVPDWARKTLAEQ 331
>gi|332162128|ref|YP_004298705.1| tetrathionate reductase complex: two-component system response
regulator [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325666358|gb|ADZ43002.1| tetrathionate reductase complex: two-component system response
regulator [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 194
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 1 MSQLGLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWAD-- 58
M L EV+ ++LN + AH +PQ VE+ KLGAV DF L++ + A
Sbjct: 55 MPLLDGTEVYARMRQLNSTLAVIFLTAHGEVPQAVEQMKLGAV--DF--LQKPVATAPLI 110
Query: 59 -TLKKDLPKDVPLIQRAVLEVRRV-LPKHSKAVDSFCEEAIVRRELADNFCYYNKNYD 114
L++ L + L+ R +++R LP + + + + ++ R++AD C + +
Sbjct: 111 AALQQGLVQSEQLVTRRQVQLRYASLPPREQMIAQWVMQGLINRDIADRACVSVRTVE 168
>gi|254561673|ref|YP_003068768.1| deoxyribodipyrimidine photolyase [Methylobacterium extorquens DM4]
gi|254268951|emb|CAX24912.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens DM4]
Length = 467
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAF-DWAKKTLNDH 130
+ EE IVRRELA N ++ + YD A DWA+KTL +H
Sbjct: 296 YLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEH 335
>gi|218530705|ref|YP_002421521.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens CM4]
gi|218523008|gb|ACK83593.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens CM4]
Length = 467
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAF-DWAKKTLNDH 130
+ EE IVRRELA N ++ + YD A DWA+KTL +H
Sbjct: 296 YLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEH 335
>gi|240139079|ref|YP_002963554.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens AM1]
gi|418058150|ref|ZP_12696129.1| DNA photolyase FAD-binding [Methylobacterium extorquens DSM 13060]
gi|240009051|gb|ACS40277.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens AM1]
gi|373568265|gb|EHP94215.1| DNA photolyase FAD-binding [Methylobacterium extorquens DSM 13060]
Length = 467
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAF-DWAKKTLNDH 130
+ EE IVRRELA N ++ + YD A DWA+KTL +H
Sbjct: 296 YLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEH 335
>gi|163851953|ref|YP_001639996.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
gi|163663558|gb|ABY30925.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
Length = 467
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAF-DWAKKTLNDH 130
+ EE IVRRELA N ++ + YD A DWA+KTL +H
Sbjct: 296 YLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEH 335
>gi|402471527|gb|EJW05244.1| deoxyribodipyrimidine photolyase [Edhazardia aedis USNM 41457]
Length = 431
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
Q L + + P + F E + +E A++FC NYD ++GA WA +TL+ H+
Sbjct: 250 QSLALYICKKYPIDDENTQDFLNEIFIWKETAEHFCRNECNYDNLKGASTWAVETLDAHK 309
>gi|87311465|ref|ZP_01093585.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
gi|87285877|gb|EAQ77791.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
Length = 494
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 86 SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
S +SF +E I RE+ N C NYD+ + DWA TL +H+
Sbjct: 318 STDAESFLDELITWREVGYNMCSRESNYDRYQSLPDWALVTLGEHQ 363
>gi|283779092|ref|YP_003369847.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
gi|283437545|gb|ADB15987.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
Length = 824
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 79 RRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
R + + + +E +V RELA N+CY+++ D++ WA++TL H
Sbjct: 295 REASAQGGAGAEKYLDELLVWRELAYNYCYFHRAIDRLSTLPRWAQETLAQH 346
>gi|339239563|ref|XP_003381336.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
gi|316975640|gb|EFV59048.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
Length = 515
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 84 KHSKAV-DSFCEEAIVRRELADNFCYYN-KNYDKVEGAFDWAKKTL 127
K +K+V D+F E+ +VRREL+ NF +YN +NYD ++ WA TL
Sbjct: 302 KANKSVKDAFVEQLLVRRELSINFVHYNSENYDSLKCLPKWAADTL 347
>gi|404494387|ref|YP_006718493.1| deoxyribodipyrimidine photo-lyase [Pelobacter carbinolicus DSM
2380]
gi|77546390|gb|ABA89952.1| deoxyribodipyrimidine photolyase, putative [Pelobacter carbinolicus
DSM 2380]
Length = 490
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 90 DSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
++F ++ + REL FC+ +YD++E WA+ TL DH
Sbjct: 321 EAFLDQLVTWRELGHLFCFKRHDYDRMESLPAWAQTTLQDH 361
>gi|343485400|dbj|BAJ51054.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum
subterraneum]
Length = 457
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 60 LKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGA 119
L+ + V +++R V E RR + V+S E +V RELA N YN ++K EG
Sbjct: 261 LRYGMISPVQVLKR-VFEYRR---RGDVNVESLINELVVWRELARNGEVYNPFFEKYEGL 316
Query: 120 FDWAKKTLNDH 130
+WA++TL+ H
Sbjct: 317 PEWARETLSIH 327
>gi|332295845|ref|YP_004437768.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
14796]
gi|332178948|gb|AEE14637.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
14796]
Length = 443
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 75 VLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFD-WAKKTLNDHR 131
+L+ + K S+ SF EE ++RRELA NF YY+ + + +E WA KT +H+
Sbjct: 264 ILDTLEIFDKSSENYYSFFEEMVIRRELAHNFTYYSNDLNNLENLLPAWAFKTFYEHK 321
>gi|315425180|dbj|BAJ46850.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum
subterraneum]
gi|374852319|dbj|BAL55255.1| deoxyribodipyrimidine photo-lyase [uncultured crenarchaeote]
Length = 360
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 60 LKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGA 119
L+ + V +++R V E RR + V+S E +V RELA N YN ++K EG
Sbjct: 164 LRYGMISPVQVLKR-VFEYRR---RGDVNVESLINELVVWRELARNGEVYNPFFEKYEGL 219
Query: 120 FDWAKKTLNDH 130
+WA++TL+ H
Sbjct: 220 PEWARETLSIH 230
>gi|188581711|ref|YP_001925156.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
gi|179345209|gb|ACB80621.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
Length = 467
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 91 SFCEEAIVRRELADNFCYYNKNYDKVEGAF-DWAKKTLNDH 130
++ EE IVRRELA N ++ + YD A +WA+KTL +H
Sbjct: 295 AYLEELIVRRELAMNHVFHTEGYDDYARAVPEWARKTLAEH 335
>gi|149924015|ref|ZP_01912399.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
gi|149815144|gb|EDM74696.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
Length = 229
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN-YDKVEGAFDWAKKTLNDHR 131
+A+ RR S++ + F +E ++ REL FC+++ + Y + +WA+ TL DHR
Sbjct: 39 KALRGSRRGWWGLSESAEGFLDELVIWRELGQVFCWHHPDAYLRYGSLPEWARTTLEDHR 98
>gi|440492998|gb|ELQ75517.1| Deoxyribodipyrimidine photolyase/cryptochrome [Trachipleistophora
hominis]
Length = 651
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 86 SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
S V ++ E V RE A+ F N NYD GA WA+ TL H
Sbjct: 478 SVNVTTYLNEIFVWRETAEYFILRNPNYDNFYGALKWAQDTLTAH 522
>gi|442320785|ref|YP_007360806.1| deoxyribodipyrimidine photolyase [Myxococcus stipitatus DSM 14675]
gi|441488427|gb|AGC45122.1| deoxyribodipyrimidine photolyase [Myxococcus stipitatus DSM 14675]
Length = 486
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKV--EGAFDWAKKTLNDHR 131
AV SF EE +VRREL N+C++ ++ E WA++TL H+
Sbjct: 299 AVRSFLEELLVRRELGFNYCFHTPEARQLSTESLPGWARETLRTHQ 344
>gi|317416914|emb|CBI63255.1| deoxyribodipyrimidine photolyase 1 [Hyaloperonospora arabidopsidis]
Length = 596
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 91 SFCEEAIVRRELADNFCYYNK-NYDKVEGAFDWAKKTLNDH 130
SF EE IVRREL+ N YN+ NYD ++A+ TL +H
Sbjct: 381 SFLEELIVRRELSVNLVVYNQDNYDSFRCLPNYAQTTLQEH 421
>gi|348690945|gb|EGZ30759.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 572
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 71 IQRAVLEVRRV--LPKHSKAVDSFCEEAIVRRELADNFCYYN-KNYDKVEGAFDWAKKTL 127
+ R VL ++ + + + + SF EE IVRREL+ N YN +NYD + +A+ TL
Sbjct: 337 VVRVVLAAHKLKGVTRAKEGLASFLEELIVRRELSVNLVAYNQQNYDSMRCLPSYAQITL 396
Query: 128 NDH 130
+H
Sbjct: 397 EEH 399
>gi|296121685|ref|YP_003629463.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
gi|296014025|gb|ADG67264.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
Length = 493
Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 86 SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
S A ++F +E I RE+ NF + ++YD+ E WA+++L H
Sbjct: 318 SPAAEAFLDELITWREVGYNFTSHREDYDQYESLPAWARQSLEKH 362
>gi|188586748|ref|YP_001918293.1| deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351435|gb|ACB85705.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 456
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
F E+ IVRREL+ N N NY + W+ KTLN+HR
Sbjct: 293 FLEQLIVRRELSLNLIEKNINYLTLSPLPQWSIKTLNEHR 332
>gi|330864034|emb|CBX74113.1| transcriptional regulatory protein fixJ [Yersinia enterocolitica
W22703]
Length = 194
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 1 MSQLGLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWA--- 57
M L EV+ ++LN + AH +PQ VE+ KLGAV DF L++ + A
Sbjct: 55 MPLLDGTEVYARMRQLNSTLAVIFLTAHGEVPQAVEQMKLGAV--DF--LQKPVATAPLI 110
Query: 58 DTLKKDLPKDVPLIQRAVLEVRRV-LPKHSKAVDSFCEEAIVRRELADNFCYYNKNYD 114
L++ L + L+ R +++R L + + + + ++ R++AD C + +
Sbjct: 111 AALQQGLVQSEQLVTRRQVQLRYASLTPREQMIAQWVMQGLINRDIADRACVSVRTVE 168
>gi|386307948|ref|YP_006004004.1| tetrathionate reductase two-component response regulator [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418240451|ref|ZP_12866990.1| tetrathionate reductase complex: two-component system response
regulator [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433550007|ref|ZP_20506051.1| Tetrathionate reductase two-component response regulator [Yersinia
enterocolitica IP 10393]
gi|318606178|emb|CBY27676.1| tetrathionate reductase two-component response regulator [Yersinia
enterocolitica subsp. palearctica Y11]
gi|351780082|gb|EHB22167.1| tetrathionate reductase complex: two-component system response
regulator [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431789142|emb|CCO69091.1| Tetrathionate reductase two-component response regulator [Yersinia
enterocolitica IP 10393]
Length = 194
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 1 MSQLGLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWA--- 57
M L EV+ ++LN + AH +PQ VE+ KLGAV DF L++ + A
Sbjct: 55 MPLLDGTEVYARMRQLNSTLAVIFLTAHGEVPQAVEQMKLGAV--DF--LQKPVATAPLI 110
Query: 58 DTLKKDLPKDVPLIQRAVLEVRRV-LPKHSKAVDSFCEEAIVRRELADNFCYYNKNYD 114
L++ L + L+ R +++R L + + + + ++ R++AD C + +
Sbjct: 111 AALQQGLVQSEQLVTRRQVQLRYASLTPREQMIAQWVMQGLINRDIADRACVSVRTVE 168
>gi|405360763|ref|ZP_11025704.1| Deoxyribodipyrimidine photolyase, type II [Chondromyces apiculatus
DSM 436]
gi|397090452|gb|EJJ21316.1| Deoxyribodipyrimidine photolyase, type II [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 488
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAF--DWAKKTLNDHR 131
+V SF EE +VRREL N+CY+ ++ A WA+++L H+
Sbjct: 301 SVQSFIEELLVRRELGFNYCYHTPGPQQLSVASLPPWARESLTKHQ 346
>gi|187234366|gb|ACD01435.1| DNA photolyase I [Pseudoplusia includens nucleopolyhedrovirus]
Length = 243
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVE 117
K K V+ F E + RRE ADN+C +N NY+K +
Sbjct: 151 KLKKNVERFLENLLYRREYADNYCLFNANYNKFK 184
>gi|116753557|ref|YP_842675.1| deoxyribodipyrimidine photolyase-like [Methanosaeta thermophila
PT]
gi|116665008|gb|ABK14035.1| Deoxyribodipyrimidine photolyase-like protein [Methanosaeta
thermophila PT]
Length = 114
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLR 51
GL+E+ + L I F F G ++P+ ++ G ++ DF PLR
Sbjct: 33 GLRELEQRLSSLGIAFIFTHGDPGNVIPEIIDDSGAGMLIADFSPLR 79
>gi|374725105|gb|EHR77185.1| DNA deoxyribodipyrimidine photolyase [uncultured marine group II
euryarchaeote]
Length = 498
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 89 VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
V++F ++ I REL N Y+N ++ DWAK+TL++H
Sbjct: 331 VEAFLDQIITWRELGFNNAYHNPEHNHFTSLPDWAKRTLSEH 372
>gi|241742605|ref|XP_002412397.1| hypothetical protein IscW_ISCW021597 [Ixodes scapularis]
gi|215505723|gb|EEC15217.1| hypothetical protein IscW_ISCW021597 [Ixodes scapularis]
Length = 741
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 50 LREHMGWADTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELAD 104
LR+H W D P+DV +RA++ + R LP AV E A+V +L D
Sbjct: 135 LRDHWQWLDD-----PQDVAKAERAIVSLARSLPAKGSAVPRILEPAVVGADLQD 184
>gi|187234368|gb|ACD01436.1| DNA photolyase [Pseudoplusia includens nucleopolyhedrovirus]
Length = 242
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVE 117
K K V+ F E + RRE ADN+C +N NY+K +
Sbjct: 150 KLKKNVERFLENLLYRREYADNYCLFNANYNKFK 183
>gi|395864000|gb|AFN80538.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864002|gb|AFN80539.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864004|gb|AFN80540.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864006|gb|AFN80541.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVE 117
K K V+ F E + RRE ADN+C +N NY+K +
Sbjct: 149 KLKKNVERFLENLLYRREYADNYCLFNANYNKFK 182
>gi|395864010|gb|AFN80543.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864012|gb|AFN80544.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVE 117
K K V+ F E + RRE ADN+C +N NY+K +
Sbjct: 149 KLKKNVERFLENLLYRREYADNYCLFNANYNKFK 182
>gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
Length = 479
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 76 LEVRRVL---PKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
L VR+ + P + +++ ++ I REL NF Y NYD A WAK T+ +H
Sbjct: 285 LAVRKAIQTNPAAKVSGEAYLDQLITWRELCINFVKYEPNYDTAACADPWAKVTIGEH 342
>gi|429964158|gb|ELA46156.1| hypothetical protein VCUG_02358 [Vavraia culicis 'floridensis']
Length = 675
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 89 VDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
V ++ E + RE A+ F N NYD GA WA+ TL H
Sbjct: 509 VTTYLNEVFIWRETAEYFITRNANYDNFYGALKWAQDTLMAH 550
>gi|395864008|gb|AFN80542.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 84 KHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVE 117
K K V+ F E + RRE ADN+C +N NY+K +
Sbjct: 149 KLKKNVERFLENLLYRREYADNYCLFNANYNKFK 182
>gi|338535392|ref|YP_004668726.1| deoxyribodipyrimidine photolyase [Myxococcus fulvus HW-1]
gi|337261488|gb|AEI67648.1| deoxyribodipyrimidine photolyase [Myxococcus fulvus HW-1]
Length = 488
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 73 RAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYN--KNYDKVEGAFDWAKKTLNDH 130
RA ++ R + +V F EE +VRREL N+C++ K V WA++TL H
Sbjct: 289 RAAIQARGA---NDASVQGFIEELLVRRELGFNYCFHTPEKQQLSVSSLPPWARETLTRH 345
Query: 131 R 131
+
Sbjct: 346 Q 346
>gi|301090094|ref|XP_002895279.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
T30-4]
gi|262100969|gb|EEY59021.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
T30-4]
Length = 582
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 78 VRRVLPKHS--------KAVDSFCEEAIVRRELADNFCYYNK-NYDKVEGAFDWAKKTLN 128
VR VL H + + SF EE IVRREL+ N YN+ NYD + +A+ TL
Sbjct: 342 VRVVLAAHKLKGVKRAKEGLASFLEELIVRRELSVNLVVYNQDNYDSMCCLPSYAQITLQ 401
Query: 129 DH 130
+H
Sbjct: 402 EH 403
>gi|1197525|gb|AAC43723.1| photolyase [Myxococcus xanthus DZF1]
gi|1589149|prf||2210323A photolyase
Length = 400
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAF--DWAKKTLNDHR 131
+V F EE +VRREL N+C++ ++ A WAK+TL H+
Sbjct: 213 SVQGFLEELLVRRELGFNYCFHTPGPQQLSVASLPPWAKETLTRHQ 258
>gi|108759895|ref|YP_632311.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
gi|108463775|gb|ABF88960.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
Length = 488
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 88 AVDSFCEEAIVRRELADNFCYYNKNYDKVEGAF--DWAKKTLNDHR 131
+V F EE +VRREL N+C++ ++ A WAK+TL H+
Sbjct: 301 SVQGFLEELLVRRELGFNYCFHTPGPQQLSVASLPPWAKETLTRHQ 346
>gi|291334324|gb|ADD93984.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
MedDCM-OCT-S09-C3]
Length = 496
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 86 SKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
S+ ++F ++ I REL +CY + ++ + +WAKKTL +H
Sbjct: 325 SEGAEAFLDQVITWRELGFVYCYEHPDHTSYQTLPEWAKKTLEEH 369
>gi|422014804|ref|ZP_16361413.1| two component system response regulator of tetrathionate reductase
complex [Providencia burhodogranariea DSM 19968]
gi|414100684|gb|EKT62299.1| two component system response regulator of tetrathionate reductase
complex [Providencia burhodogranariea DSM 19968]
Length = 198
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 1 MSQLGLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFM--PLREHMGWAD 58
M +L ++VH+ K + H +P VE+ KLGAV DF+ P+ + A+
Sbjct: 55 MPKLDGRQVHQLLKTQQSTLAVIFLSGHGDIPMAVEQVKLGAV--DFLQKPI-DSQRLAE 111
Query: 59 TLKKDLPKDVPLIQRAVLEVR-RVLPKHSKAVDSFCEEAIVRRELADNFC 107
TL++ K +++ R + L K + ++ + ++ RE+AD C
Sbjct: 112 TLEQAFTKTAKATASYLVQQRYKTLTPREKEICTYVLQGLLNREIADVAC 161
>gi|162448261|ref|YP_001621393.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
gi|161986368|gb|ABX82017.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
Length = 458
Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 80 RVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFD-WAKKTLNDH 130
++ P+ S + F E+ +VRR LA NF Y K+YD E + WA +T+ +H
Sbjct: 283 KIYPEMS---EGFIEQLVVRRSLAYNFVTYIKDYDVFEFMTESWAYETMYEH 331
>gi|344235944|gb|EGV92047.1| Putative DNA helicase INO80 complex-like 1 [Cricetulus griseus]
Length = 1058
Score = 35.0 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 27 AHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDLPKDVPLIQRAVLEVRRVLPKHS 86
+H+ P +K L I+ + R W +KK+LPK L + + EVRR +
Sbjct: 173 SHDAPPPGTKKKHLS---IEQLNARRRKVWLSIVKKELPK---LAHQCMKEVRRAALQAQ 226
Query: 87 KAVDSFCEEAIVR-RELADNFCYYNKNYDKVE 117
K C+E + R R L Y K Y+KVE
Sbjct: 227 KN----CKETLPRARRLTKEMLLYWKKYEKVE 254
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,108,363,349
Number of Sequences: 23463169
Number of extensions: 80181538
Number of successful extensions: 182367
Number of sequences better than 100.0: 340
Number of HSP's better than 100.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 181819
Number of HSP's gapped (non-prelim): 554
length of query: 131
length of database: 8,064,228,071
effective HSP length: 97
effective length of query: 34
effective length of database: 10,083,267,974
effective search space: 342831111116
effective search space used: 342831111116
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)