BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15173
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorous tridactylus GN=PHR
PE=2 SV=1
Length = 532
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 50/60 (83%)
Query: 71 IQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
+QRA+LEV++ ++ +V +F EEA+VRRELADNFC+YNKNYDK+EGA+DWA+ TL H
Sbjct: 344 VQRAILEVQKHRSRYPDSVTNFVEEAVVRRELADNFCFYNKNYDKLEGAYDWAQTTLRLH 403
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV E+C+KL I FH L+G ++LP FV+ H +G +V DF PL H W ++ L
Sbjct: 153 GLEEVAEECEKLCIPFHLLLGLPKDVLPAFVQTHGIGGIVTDFSPLLHHTQWVKDVQDAL 212
Query: 65 PKDVPLIQ 72
P+ VP +Q
Sbjct: 213 PRQVPFVQ 220
>sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius auratus GN=phr PE=2
SV=1
Length = 556
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDL 64
GL+EV ++CK L+I+FH L G + LP FVEK K GAVV DF PLR + W +T+KK L
Sbjct: 164 GLQEVAKECKSLDIQFHLLSGEPGQNLPSFVEKWKFGAVVTDFNPLRIPLQWIETVKKHL 223
Query: 65 PKDVPLIQ 72
P DVP IQ
Sbjct: 224 PADVPFIQ 231
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR V +V+R S++V SF EE +VRRELADNFC+YN +YD + GA+DWAKKTL DH
Sbjct: 356 QRVVKQVKRE-KNASESVASFIEELVVRRELADNFCFYNPSYDNISGAYDWAKKTLQDH 413
>sp|Q9SB00|PHR_ARATH Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1
PE=2 SV=1
Length = 496
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE R+V +AVD+F EE IVRREL+DNFCYY +YD ++GA++WA+K+L DH
Sbjct: 284 QRCALEARKVRSTSPQAVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDH 342
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 5 GLKEVHEDCKKLNIEFHFLIGGAHEILPQFVEKHKLGAVVIDFMPLRE 52
GL+++H L I F L G A E +P F+ + +V DF PLRE
Sbjct: 84 GLRQLHHQIDSLQIPFFLLQGDAKETIPNFLTECGASHLVTDFSPLRE 131
>sp|Q6F6A2|PHR_ORYSJ Deoxyribodipyrimidine photo-lyase OS=Oryza sativa subsp. japonica
GN=PHR PE=1 SV=1
Length = 506
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
QR LE ++ K+VD+F EE +VRRELADNFCYY YD + GA++WA+KTL DH
Sbjct: 296 QRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDH 354
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 20 FHFLIGGAHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDLPKDVPLIQRAVLEVR 79
F GG EI P V + +V DF PLR D + DL ++ P + ++
Sbjct: 111 FFLFTGGPAEI-PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAH 169
Query: 80 RVLP 83
V+P
Sbjct: 170 NVVP 173
>sp|P58818|PHR_METTM Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=phr PE=1 SV=2
Length = 444
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
F EE IVRREL+ NF +Y+ NY + +WA+KTL +H
Sbjct: 277 FLEELIVRRELSMNFVHYSDNYSSIRCLPEWAQKTLMEH 315
>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=phr PE=3 SV=2
Length = 445
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 92 FCEEAIVRRELADNFCYYNKNYDKVEGAFDWAKKTLNDH 130
F EE IVRREL+ NF +Y+ +Y + +WA++TL DH
Sbjct: 277 FLEELIVRRELSMNFVHYSDSYSSISCLPEWAQRTLMDH 315
>sp|Q9XGC9|MSH2_MAIZE DNA mismatch repair protein MSH2 OS=Zea mays GN=MUS1 PE=3 SV=1
Length = 942
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 3 QLGLKEVHEDCKKLNIEFHFLIGGAHE-ILPQFVEKHKLGAVVIDFMPLREHMGWADTL- 60
+LGL E ED + N+E + G E +LP EK ID PL++ + + L
Sbjct: 171 KLGLAEFPEDSRFTNVESALVALGCKECLLPADCEKS------IDLNPLQDVISNCNVLL 224
Query: 61 ---------KKDLPKDVPLIQRAVLE-VRRVLPKHSKAVDSFCEEAIVRRELADNFCYYN 110
+DL +D+ I R +E VR +L + A+ LAD+ Y N
Sbjct: 225 TEKKKADFKSRDLAQDLGRIIRGSVEPVRDLLSQFDYALGPLGALLSYAELLADDTNYGN 284
Query: 111 KNYDK 115
+K
Sbjct: 285 YTIEK 289
>sp|P53385|HUTU_TRIRP Urocanate hydratase OS=Trifolium repens PE=3 SV=1
Length = 564
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 21/114 (18%)
Query: 23 LIGGAHEILPQFVEKHKLGAVVIDFM--------PLREHM--GWA----DTLKKDLPKDV 68
L+G A EILP+ V++ K G + D + P+ ++ GW ++ ++ PK V
Sbjct: 241 LLGNAAEILPELVQRAKAGGMKPDIVTDQTSAHDPINGYLPAGWDLARWESSRQSDPKAV 300
Query: 69 PLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVEGAFDW 122
RA + V H +A+ FC I + +N + + V+ AFD+
Sbjct: 301 EKAARASMAV------HVQAMLDFCHMGIPTVDYGNNIRQVALD-EGVKNAFDF 347
>sp|A1W1X2|LEU1_CAMJJ 2-isopropylmalate synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=leuA PE=3 SV=1
Length = 511
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 53 HMGWADTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN 112
HM D LKKD + + + +RA++ R ++ V+ CE+A R DN C+
Sbjct: 107 HM--QDKLKKDFDEILSMAKRAIIRAR----SYTDDVEFSCEDA--GRTPIDNLCFM--- 155
Query: 113 YDKVEGAFDWAKKTLN 128
VE A KT+N
Sbjct: 156 ---VENAIKAGAKTIN 168
>sp|Q5HS76|LEU1_CAMJR 2-isopropylmalate synthase OS=Campylobacter jejuni (strain RM1221)
GN=leuA PE=3 SV=1
Length = 511
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 53 HMGWADTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN 112
HM D LKKD + + + +RA++ R ++ V+ CE+A R DN C+
Sbjct: 107 HM--QDKLKKDFDEILSMAKRAIIRAR----SYTDDVEFSCEDA--GRTPIDNLCFM--- 155
Query: 113 YDKVEGAFDWAKKTLN 128
VE A KT+N
Sbjct: 156 ---VENAIKAGAKTIN 168
>sp|Q9PLV9|LEU1_CAMJE 2-isopropylmalate synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=leuA PE=3 SV=1
Length = 511
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 53 HMGWADTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN 112
HM D LKKD + + + +RA++ R ++ V+ CE+A R DN C+
Sbjct: 107 HM--QDKLKKDFDEILSMAKRAIIRAR----SYTDDVEFSCEDA--GRTPIDNLCFM--- 155
Query: 113 YDKVEGAFDWAKKTLN 128
VE A KT+N
Sbjct: 156 ---VENAIKAGAKTIN 168
>sp|A7H667|LEU1_CAMJD 2-isopropylmalate synthase OS=Campylobacter jejuni subsp. doylei
(strain ATCC BAA-1458 / RM4099 / 269.97) GN=leuA PE=3
SV=1
Length = 511
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 58 DTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKNYDKVE 117
D LKKD + + + +RA++ R ++ V+ CE+A R DN C+ VE
Sbjct: 110 DKLKKDFDEILSMAKRAIIRAR----SYTDDVEFSCEDA--GRTPIDNLCFM------VE 157
Query: 118 GAFDWAKKTLN 128
A KT+N
Sbjct: 158 NAIKAGAKTIN 168
>sp|A8FP35|LEU1_CAMJ8 2-isopropylmalate synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=leuA PE=3
SV=1
Length = 511
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 53 HMGWADTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFCEEAIVRRELADNFCYYNKN 112
HM D LKKD + + + +RA++ R ++ V+ CE+A R DN C+
Sbjct: 107 HM--QDKLKKDFDEILSMAKRAIIRAR----SYTDDVEFSCEDA--GRTPIDNLCFM--- 155
Query: 113 YDKVEGAFDWAKKTLN 128
VE A KT+N
Sbjct: 156 ---VENAIKAGAKTIN 168
>sp|B9M0X3|EX7L_GEOSF Exodeoxyribonuclease 7 large subunit OS=Geobacter sp. (strain
FRC-32) GN=xseA PE=3 SV=1
Length = 445
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 26 GAHEILPQFVEKHKLGAVVIDFMPLREHMG----WADTLKKDLPK 66
G ++++ +++E +GA+ + F+ L+E + ++D+ KKD+P+
Sbjct: 92 GEYQLIVEYLEPKGIGALQLAFIQLKERLAKEGLFSDSHKKDIPR 136
>sp|B8DHE7|EZRA_LISMH Septation ring formation regulator EzrA OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=ezrA PE=3 SV=1
Length = 571
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 31 LPQFVEKHKLGAVVIDFMPLREHMGWA-DTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAV 89
L + +E+ +L + +++ LREHMG + DTL+K L ++ PL +AV + R+ + +
Sbjct: 429 LDRKMERERLPGLPEEYLSLREHMGESIDTLEKRL-EEKPLNMKAVSQDWRIAEEDLIHL 487
Query: 90 DSFCEEAIVRRELADNFCYYNKNY 113
EE + L ++ Y Y
Sbjct: 488 TEKAEEMMENVRLVEHVIQYANRY 511
>sp|A0AJ43|EZRA_LISW6 Septation ring formation regulator EzrA OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=ezrA PE=3 SV=1
Length = 571
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 31 LPQFVEKHKLGAVVIDFMPLREHMGWA-DTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAV 89
L + +E+ +L + +++ LREHMG + D L+K L ++ PL +AV + R+ + +
Sbjct: 429 LDRKMERERLPGLPEEYLSLREHMGESIDALEKRL-EEKPLNMKAVTQDWRIAEEDLNHL 487
Query: 90 DSFCEEAIVRRELADNFCYYNKNY 113
EE + L ++ Y Y
Sbjct: 488 TEKAEEMMENVRLVEHVIQYANRY 511
>sp|A5GF75|EX7L_GEOUR Exodeoxyribonuclease 7 large subunit OS=Geobacter uraniireducens
(strain Rf4) GN=xseA PE=3 SV=1
Length = 446
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 26 GAHEILPQFVEKHKLGAVVIDFMPLREHMG----WADTLKKDLPK 66
G ++++ +++E +GA+ + F+ L+E + +A+T KK +PK
Sbjct: 93 GEYQLIVEYLEPQGIGALQLAFIQLKERLAKEGLFAETHKKPIPK 137
>sp|Q8Y6T8|EZRA_LISMO Septation ring formation regulator EzrA OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ezrA PE=3
SV=1
Length = 571
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 31 LPQFVEKHKLGAVVIDFMPLREHMGWA-DTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAV 89
L + +E+ +L + +++ LREHMG + D L+K L ++ PL +AV + R+ + +
Sbjct: 429 LDRKMERERLPGLPEEYLSLREHMGESIDALEKRL-EEKPLNMKAVSQDWRIAEEDLTHL 487
Query: 90 DSFCEEAIVRRELADNFCYYNKNY 113
EE + L ++ Y Y
Sbjct: 488 TEKAEEMMENVRLVEHVIQYANRY 511
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 23/107 (21%)
Query: 27 AHEILPQFVEKHKLGAVVIDFMPLREHMGWADTLKKDLPK---------------DVPLI 71
+H+ P +K L I+ + R W +KK+LPK L
Sbjct: 257 SHDAPPPGTKKKHLS---IEQLNARRRKVWLSIVKKELPKANKQKSSARNLFLTNSRKLA 313
Query: 72 QRAVLEVRRVLPKHSKAVDSFCEEAIVR-RELADNFCYYNKNYDKVE 117
+ + EVRR + K C+E + R R L Y K Y+KVE
Sbjct: 314 HQCMKEVRRAALQAQKN----CKETLPRARRLTKEMLLYWKKYEKVE 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,289,874
Number of Sequences: 539616
Number of extensions: 2004214
Number of successful extensions: 4704
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4682
Number of HSP's gapped (non-prelim): 43
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)