RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15173
         (131 letters)



>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 121

 Score = 27.1 bits (60), Expect = 0.46
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 86  SKAVDSFCEEAIVRRE--LADNFCYYNKNYDKVEGAFDWAKKTLNDHR 131
              V  F +  + + +  L +    +N+ +  +    D  K    D R
Sbjct: 10  QDLVALFAKVTVEQDDALLGNQISRFNRLFGVMAEIADELKARDGDQR 57


>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
          synthetase PurK (AIRC), N-domain {Escherichia coli
          [TaxId: 562]}
          Length = 78

 Score = 23.2 bits (50), Expect = 6.6
 Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 1/22 (4%)

Query: 2  SQLGLKEVHEDCKKLNIEFHFL 23
           QLG + + +  + L I    +
Sbjct: 10 GQLG-RMLRQAGEPLGIAVWPV 30


>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia
           virus [TaxId: 10245]}
          Length = 297

 Score = 24.0 bits (52), Expect = 7.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 96  AIVRRELADNFCYYNKNYD 114
            IVR ++  NF Y N+ YD
Sbjct: 241 KIVRNKVVVNFDYPNQEYD 259


>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
          protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 23.9 bits (50), Expect = 7.3
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 57 ADTLKKDLPKDVPLIQRAVLEVRRVLPKHSKAVDSFC 93
          AD     +  ++  + R  +  RR L  H   + +  
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMH 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 533,416
Number of extensions: 23999
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 6
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)