Query psy15178
Match_columns 103
No_of_seqs 116 out of 369
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:32:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lw5_I PSI-I, photosystem I re 38.9 5.1 0.00017 20.6 -0.4 13 91-103 1-13 (30)
2 1x4o_A Splicing factor 4; stru 24.0 10 0.00035 23.0 -1.0 13 70-82 55-67 (78)
3 4a1x_C CP5-46-A peptide; hydro 21.4 24 0.00081 17.1 0.3 7 18-24 16-22 (26)
4 2e5z_A SFRS8 protein, splicing 21.1 13 0.00046 23.4 -0.9 14 71-84 60-73 (90)
5 2dt6_A Splicing factor 3 subun 15.7 18 0.00063 20.9 -1.1 11 72-82 42-52 (64)
6 3nxg_A Major capsid protein VP 14.2 38 0.0013 25.5 0.0 8 19-26 179-186 (272)
7 1ug0_A Splicing factor 4; SURP 13.7 20 0.00069 22.2 -1.4 12 71-82 66-77 (88)
8 3iys_A Major capsid protein VP 11.9 57 0.002 25.2 0.4 8 19-26 195-202 (343)
9 1vps_A Polyomavirus VP1 pentam 11.8 45 0.0016 25.2 -0.1 8 19-26 192-199 (289)
10 3s7v_A Major capsid protein VP 11.5 47 0.0016 25.0 -0.1 8 19-26 188-195 (277)
No 1
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=38.91 E-value=5.1 Score=20.60 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=10.3
Q ss_pred HhhhchhheeecC
Q psy15178 91 YAGNTCSSVLLVG 103 (103)
Q Consensus 91 lf~~P~~~~~~~~ 103 (103)
++++|++.+=+||
T Consensus 1 ~~~LPsi~VPlVG 13 (30)
T 3lw5_I 1 MINLPSLFVPLVG 13 (30)
T ss_dssp CCCCCTTTTCCCC
T ss_pred CCCCcchHHhHHH
Confidence 4678999888776
No 2
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=24.00 E-value=10 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=9.9
Q ss_pred ccceeeeeccchh
Q psy15178 70 EDRKTYGYYHLSC 82 (103)
Q Consensus 70 ~~~~~~~YYQWVp 82 (103)
.+..+|.||||--
T Consensus 55 ~~~~~h~YYr~kl 67 (78)
T 1x4o_A 55 PNSQGYRYYRQKL 67 (78)
T ss_dssp SSSSHHHHHHHHH
T ss_pred CCCCCcHHHHHHH
Confidence 3457899999963
No 3
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=21.37 E-value=24 Score=17.08 Aligned_cols=7 Identities=43% Similarity=1.046 Sum_probs=5.6
Q ss_pred CCccccc
Q psy15178 18 NPIDCVH 24 (103)
Q Consensus 18 ~PI~C~~ 24 (103)
+||+|..
T Consensus 16 dpihcd~ 22 (26)
T 4a1x_C 16 DPIHCDX 22 (26)
T ss_pred Cceeccc
Confidence 7999973
No 4
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.12 E-value=13 Score=23.40 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=10.1
Q ss_pred cceeeeeccchhHH
Q psy15178 71 DRKTYGYYHLSCTK 84 (103)
Q Consensus 71 ~~~~~~YYQWVpfv 84 (103)
+..+|.||||--.-
T Consensus 60 ~~pyh~YY~~kl~e 73 (90)
T 2e5z_A 60 WHQYNAYYEFKKQF 73 (90)
T ss_dssp SCSTHHHHHHHHHH
T ss_pred CCcccHHHHHHHHH
Confidence 34679999997543
No 5
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=15.68 E-value=18 Score=20.89 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=8.6
Q ss_pred ceeeeeccchh
Q psy15178 72 RKTYGYYHLSC 82 (103)
Q Consensus 72 ~~~~~YYQWVp 82 (103)
...|.||||--
T Consensus 42 ~~~h~YY~~~l 52 (64)
T 2dt6_A 42 DPYHAYYRHKV 52 (64)
T ss_dssp STTHHHHHHHH
T ss_pred CCCchHHHHHH
Confidence 35799999963
No 6
>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein; 1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
Probab=14.17 E-value=38 Score=25.46 Aligned_cols=8 Identities=25% Similarity=0.870 Sum_probs=6.8
Q ss_pred CcccccCC
Q psy15178 19 PIDCVHTK 26 (103)
Q Consensus 19 PI~C~~~~ 26 (103)
||+||+|.
T Consensus 179 PvE~W~pD 186 (272)
T 3nxg_A 179 PVECWVPD 186 (272)
T ss_dssp BGGGEEEC
T ss_pred ceEEECCC
Confidence 99999764
No 7
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=13.73 E-value=20 Score=22.21 Aligned_cols=12 Identities=17% Similarity=0.539 Sum_probs=9.3
Q ss_pred cceeeeeccchh
Q psy15178 71 DRKTYGYYHLSC 82 (103)
Q Consensus 71 ~~~~~~YYQWVp 82 (103)
+..+|.||||--
T Consensus 66 ~~~~h~YYr~kl 77 (88)
T 1ug0_A 66 NSREFLYYRRKV 77 (88)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 456899999964
No 8
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=11.92 E-value=57 Score=25.25 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=6.8
Q ss_pred CcccccCC
Q psy15178 19 PIDCVHTK 26 (103)
Q Consensus 19 PI~C~~~~ 26 (103)
||+||+|.
T Consensus 195 PVE~W~PD 202 (343)
T 3iys_A 195 PIECWCPD 202 (343)
T ss_pred ceEEECCC
Confidence 99999764
No 9
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide binding, virus assembly, acid, viral protein; HET: SIA GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1 PDB: 1vpn_A* 1cn3_A
Probab=11.81 E-value=45 Score=25.23 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=6.8
Q ss_pred CcccccCC
Q psy15178 19 PIDCVHTK 26 (103)
Q Consensus 19 PI~C~~~~ 26 (103)
||+||+|.
T Consensus 192 PVE~W~PD 199 (289)
T 1vps_A 192 PVEIWHPD 199 (289)
T ss_dssp BTTTEEEC
T ss_pred ceEeEcCC
Confidence 99999764
No 10
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=11.46 E-value=47 Score=24.98 Aligned_cols=8 Identities=0% Similarity=0.148 Sum_probs=6.8
Q ss_pred CcccccCC
Q psy15178 19 PIDCVHTK 26 (103)
Q Consensus 19 PI~C~~~~ 26 (103)
||+||+|.
T Consensus 188 PVE~W~pD 195 (277)
T 3s7v_A 188 SVESWAPD 195 (277)
T ss_dssp BTTTEEEC
T ss_pred ceEEECCC
Confidence 99999764
Done!