Query psy15178
Match_columns 103
No_of_seqs 116 out of 369
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 22:32:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15178.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15178hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 20.4 20 0.0015 23.9 1.6 21 69-89 13-33 (447)
2 d2dt6a1 a.217.1.1 (A:48-110) S 17.2 7.9 0.00057 21.2 -1.0 11 72-82 41-51 (63)
3 d1x4oa1 a.217.1.1 (A:8-72) Spl 15.8 9.2 0.00067 20.9 -1.0 11 71-81 49-59 (65)
4 d1vpsa_ b.121.6.1 (A:) Polyoma 14.9 15 0.0011 26.0 -0.1 8 19-26 192-199 (285)
5 d1ug0a_ a.217.1.1 (A:) Splicin 12.3 12 0.00089 21.7 -1.2 11 71-81 66-76 (88)
6 d1sva1_ b.121.6.1 (1:) Polyoma 11.2 27 0.002 25.2 0.3 22 19-44 191-212 (348)
7 d2o6ka1 a.60.15.1 (A:4-73) Unc 10.5 22 0.0016 20.0 -0.4 7 75-81 1-7 (70)
8 d1szha_ a.226.1.1 (A:) Her-1 { 9.6 36 0.0026 21.4 0.4 13 16-28 30-42 (147)
9 d1icfi_ g.28.1.1 (I:) Class II 8.1 38 0.0028 18.4 0.0 8 34-41 38-45 (65)
10 d1g0da4 d.3.1.4 (A:141-461) Tr 7.9 11 0.00083 27.2 -3.0 26 17-42 124-162 (321)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.35 E-value=20 Score=23.88 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=14.1
Q ss_pred cccceeeeeccchhHHHHHHH
Q psy15178 69 VEDRKTYGYYHLSCTKGYLAS 89 (103)
Q Consensus 69 ~~~~~~~~YYQWVpfvL~lQA 89 (103)
++.++..+.|+|.-+++.+=+
T Consensus 13 ~~~~~~~~~~~w~i~~~~~~~ 33 (447)
T d1pw4a_ 13 AEIDPTYRRLRWQIFLGIFFG 33 (447)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhhHHHHHHHHHHHH
Confidence 344556688899988766533
No 2
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.18 E-value=7.9 Score=21.17 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=8.3
Q ss_pred ceeeeeccchh
Q psy15178 72 RKTYGYYHLSC 82 (103)
Q Consensus 72 ~~~~~YYQWVp 82 (103)
..+|.||+|--
T Consensus 41 ~~~h~YY~~~l 51 (63)
T d2dt6a1 41 DPYHAYYRHKV 51 (63)
T ss_dssp STTHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 35799999953
No 3
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.78 E-value=9.2 Score=20.91 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=8.7
Q ss_pred cceeeeeccch
Q psy15178 71 DRKTYGYYHLS 81 (103)
Q Consensus 71 ~~~~~~YYQWV 81 (103)
+...+.||+|-
T Consensus 49 ~~~~~~YYr~k 59 (65)
T d1x4oa1 49 NSQGYRYYRQK 59 (65)
T ss_dssp SSSHHHHHHHH
T ss_pred CCCCcHHHHHH
Confidence 45679999995
No 4
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Probab=14.93 E-value=15 Score=25.95 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=6.9
Q ss_pred CcccccCC
Q psy15178 19 PIDCVHTK 26 (103)
Q Consensus 19 PI~C~~~~ 26 (103)
||+||+|.
T Consensus 192 pvE~W~PD 199 (285)
T d1vpsa_ 192 PVEIWHPD 199 (285)
T ss_dssp BTTTEEEC
T ss_pred eeEeECCC
Confidence 99999874
No 5
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.33 E-value=12 Score=21.66 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=8.6
Q ss_pred cceeeeeccch
Q psy15178 71 DRKTYGYYHLS 81 (103)
Q Consensus 71 ~~~~~~YYQWV 81 (103)
+..++.||+|-
T Consensus 66 ~~~~~~YY~~k 76 (88)
T d1ug0a_ 66 NSREFLYYRRK 76 (88)
T ss_dssp SCHHHHHHHHH
T ss_pred CCCCcHHHHHH
Confidence 44679999994
No 6
>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=11.21 E-value=27 Score=25.21 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=12.5
Q ss_pred CcccccCCCCChhhhhhhhhhheeeE
Q psy15178 19 PIDCVHTKDIPEDVLNTYCWIHSTYT 44 (103)
Q Consensus 19 PI~C~~~~~~~~~y~~~yCwi~~Ty~ 44 (103)
||+||+|.-.- |.-|-.-+||+
T Consensus 191 pvE~W~PDPSk----NENtRYFG~yt 212 (348)
T d1sva1_ 191 PVECWVPDPSK----NENTRYFGTYT 212 (348)
T ss_dssp BGGGEEECTTT----CTTEEEEEEEE
T ss_pred eeeeECCCCCc----CcCceeeeeec
Confidence 99999774222 22244446664
No 7
>d2o6ka1 a.60.15.1 (A:4-73) Uncharacterized protein MW1311 {Staphylococcus aureus [TaxId: 1280]}
Probab=10.45 E-value=22 Score=19.98 Aligned_cols=7 Identities=29% Similarity=1.108 Sum_probs=5.1
Q ss_pred eeeccch
Q psy15178 75 YGYYHLS 81 (103)
Q Consensus 75 ~~YYQWV 81 (103)
++||||.
T Consensus 1 ~SFY~~L 7 (70)
T d2o6ka1 1 YSFYQFV 7 (70)
T ss_dssp CCHHHHH
T ss_pred CcHHHHH
Confidence 4788885
No 8
>d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=9.58 E-value=36 Score=21.43 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=9.6
Q ss_pred cCCCcccccCCCC
Q psy15178 16 VGNPIDCVHTKDI 28 (103)
Q Consensus 16 ~G~PI~C~~~~~~ 28 (103)
||.||.|=...+.
T Consensus 30 FgtPirCGy~rd~ 42 (147)
T d1szha_ 30 FGTPIRCGYDRDP 42 (147)
T ss_dssp HTCCCCTTCCSCT
T ss_pred cCCCeecccccCC
Confidence 8999999644444
No 9
>d1icfi_ g.28.1.1 (I:) Class II MHC associated p41 invariant chain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.10 E-value=38 Score=18.44 Aligned_cols=8 Identities=38% Similarity=0.987 Sum_probs=4.4
Q ss_pred hhhhhhhe
Q psy15178 34 NTYCWIHS 41 (103)
Q Consensus 34 ~~yCwi~~ 41 (103)
..|||=-+
T Consensus 38 ~g~CWCVd 45 (65)
T d1icfi_ 38 IGYCWCVF 45 (65)
T ss_dssp TTEEEEBC
T ss_pred CCEEEEEC
Confidence 45777543
No 10
>d1g0da4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=7.89 E-value=11 Score=27.21 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=18.9
Q ss_pred CCCc---ccccCCC----------CChhhhhhhhhhhee
Q psy15178 17 GNPI---DCVHTKD----------IPEDVLNTYCWIHST 42 (103)
Q Consensus 17 G~PI---~C~~~~~----------~~~~y~~~yCwi~~T 42 (103)
|+|. +||++++ .|...+.+|+..|+|
T Consensus 124 ~~PVkYGQCWVFAgV~~TvlRcLGIP~RvVTNf~SAHDt 162 (321)
T d1g0da4 124 VRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFASAHDV 162 (321)
T ss_dssp SCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEETTTT
T ss_pred CcccccCccHHHHHHHHHHHHhcCCCceeecccccccCC
Confidence 3566 6888763 467778888888875
Done!