RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15178
         (103 letters)



>gnl|CDD|216168 pfam00876, Innexin, Innexin.  This family includes the drosophila
          proteins Ogre and shaking-B, and the C. elegans
          proteins Unc-7 and Unc-9. Members of this family are
          integral membrane proteins which are involved in the
          formation of gap junctions. This family has been named
          the Innexins.
          Length = 341

 Score = 81.9 bits (203), Expect = 5e-20
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 11/81 (13%)

Query: 1  MILIAFSLIVTTRQYVGNPIDCVHTKDIP---EDVLNTYCWIHSTYTIRAAFKKKVGVAV 57
          +IL+AFSL+V+ +QY G+PI+C    + P   E+  N YCW+ +TY +       +G  V
Sbjct: 14 IILLAFSLLVSAKQYFGDPIECWVPAEFPGSWEEYANNYCWVQNTYFLP------LGEEV 67

Query: 58 PYPGVDNSRGKVEDRKTYGYY 78
          P    +  R    +RK   YY
Sbjct: 68 PGTDPEEDR--ERERKYITYY 86


>gnl|CDD|165115 PHA02748, PHA02748, viral inexin-like protein; Provisional.
          Length = 360

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 1   MILIAFSLIVTTRQYVGNPIDCVHTKDIPEDVLNTYCWIHSTYTIRAAFKKKVGVAVPYP 60
           +IL+AFSL+VT+RQY G+PIDC    D P   LNTYC++ ST+ +       V   VP P
Sbjct: 33  IILLAFSLLVTSRQYFGDPIDC-DFPDYPNGSLNTYCYVQSTFLVERKVTHTVNSTVPDP 91

Query: 61  GVDNSRGKVEDR-KTYGYY 78
           GV  S    ED  + YGYY
Sbjct: 92  GV--SGDTEEDELRYYGYY 108


>gnl|CDD|219988 pfam08721, Tn7_Tnp_TnsA_C, TnsA endonuclease C terminal.  The Tn7
          transposase is composed of proteins TnsA and TnsB. DNA
          breakage at the 5' end of the transposon is carried out
          by TnsA, and breakage and joining at the 3' end is
          carried out by TnsB. The C terminal domain of TnsA
          binds DNA.
          Length = 79

 Score = 25.4 bits (56), Expect = 3.0
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 27 DIPEDVLNTYCWIHSTYTIRAAFKKKVG 54
          +IP  +L    W++S   I +  +  V 
Sbjct: 1  EIPPILLENLKWLYSYLRIESNQELDVE 28


>gnl|CDD|215172 PLN02303, PLN02303, urease.
          Length = 837

 Score = 26.3 bits (58), Expect = 3.6
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 12  TRQYVGNPID--------CVH-TKDIPEDV 32
           TR Y  N ID        C H  K+IPEDV
Sbjct: 571 TRPYTKNTIDEHLDMLMVCHHLDKNIPEDV 600


>gnl|CDD|149877 pfam08943, CsiD, CsiD.  This family consists of various bacterial
           proteins pertaining to the non-haem Fe(II)-dependent
           oxygenase family. Exact function is unknown, but a
           putative role includes involvement in the control of
           utilisation of gamma-aminobutyric acid.
          Length = 297

 Score = 25.8 bits (57), Expect = 4.3
 Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 4/20 (20%)

Query: 32  VLNTYCWIHSTYTIRAAFKK 51
           VLN Y W+H     R  F+ 
Sbjct: 266 VLNNYFWLHG----RDPFEP 281


>gnl|CDD|145416 pfam02252, PA28_beta, Proteasome activator pa28 beta subunit.  PA28
           activator complex (also known as 11s regulator of 20S
           proteasome) is a ring shaped hexameric structure of
           alternating alpha and beta subunits. This family
           represents the beta subunit. The activator complex binds
           to the 20S proteasome ana simulates peptidase activity
           in and ATP-independent manner.
          Length = 150

 Score = 24.9 bits (55), Expect = 7.1
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 43  YTIRAAFKKKVGVAVPYPGVDNSRGKVEDRKTYGYYHLSCTKGYLASFYA 92
           Y+ R      V  A  YP V++ R  V +     Y  L      + + YA
Sbjct: 79  YSERG---DLVAKAAKYPHVEDYREAVHELDEKEYIELRLIVLEIRNNYA 125


>gnl|CDD|235092 PRK02963, PRK02963, carbon starvation induced protein; Validated.
          Length = 316

 Score = 25.0 bits (55), Expect = 8.5
 Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 4/20 (20%)

Query: 32  VLNTYCWIHSTYTIRAAFKK 51
           ++N   W+H     R  F  
Sbjct: 278 LINNLFWLHG----RDRFTP 293


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,145,004
Number of extensions: 412350
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 12
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)