RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15178
         (103 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 39/97 (40%)

Query: 4   IAFSLIVTTRQYV--GNPIDCVHTKDIPEDVLNTYCWIHSTYTIRAAFKKKVGVAVPYPG 61
           +  SL+   +  V  G P             L         Y +    +K      P  G
Sbjct: 366 VEISLVNGAKNLVVSGPPQS-----------L---------YGLNLTLRK---AKAP-SG 401

Query: 62  VDNSRGKVEDRKTYGY---------YHLSCTKGYLAS 89
           +D SR    +RK             +H       L  
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSH----LLVP 434


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 1.2
 Identities = 8/58 (13%), Positives = 13/58 (22%), Gaps = 16/58 (27%)

Query: 27  DIPEDVLNTYCWIHSTYT----IRAAFKKKVGVAVPYPGVDNSRGKVEDRKTYGYYHL 80
            IP  +L+   W     +    +     K   V            K     T     +
Sbjct: 386 HIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVE-----------KQPKESTISIPSI 431


>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich,
           protein-liand complex, hydrolase; HET: DCP DDN; 1.67A
           {Streptococcus mutans} PDB: 2hvv_A*
          Length = 184

 Score = 25.0 bits (55), Expect = 5.0
 Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 15  YVGNPIDCVHTKDIPEDVLNTYCW--IH 40
           Y G   D  +  D+  ++ + +C   +H
Sbjct: 78  YNGGVADTDNCDDVGHEMEDGHCIRTVH 105


>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP:
           d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A
           2fh4_A 1h1v_G* 1nph_A
          Length = 344

 Score = 25.2 bits (54), Expect = 5.7
 Identities = 8/55 (14%), Positives = 12/55 (21%)

Query: 47  AAFKKKVGVAVPYPGVDNSRGKVEDRKTYGYYHLSCTKGYLASFYAGNTCSSVLL 101
             F + +G    Y      + K  D      +  S   G               L
Sbjct: 201 DGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDL 255


>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor,
           actin-binding, ATP-binding, cytoskeleton, nucleot
           binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
           pombe}
          Length = 317

 Score = 24.2 bits (52), Expect = 8.8
 Identities = 3/15 (20%), Positives = 8/15 (53%)

Query: 75  YGYYHLSCTKGYLAS 89
             ++H+  +K Y+  
Sbjct: 268 TLHFHIKASKAYMHQ 282


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,602,133
Number of extensions: 81699
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 7
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)