RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15178
         (103 letters)



>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 200

 Score = 26.3 bits (58), Expect = 0.70
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 39  IHSTYTIRAAFKKKVGVAVPYPGVDNSRGKVEDRKTYGYYHLSCTKGYLASFYA 92
           I   ++ R      V  A   P V + R  V +     Y  +      + + YA
Sbjct: 132 ISKYFSERG---DAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYA 182


>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 44

 Score = 23.6 bits (51), Expect = 1.8
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 74 TYGYYHLSCTKGYLASFYAGNTC 96
          T G +   C +GY + F     C
Sbjct: 21 TPGDFECKCDEGYESGFMMMKNC 43


>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 164

 Score = 24.7 bits (54), Expect = 2.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 74  TYGYYHLSCTKGYLAS 89
            Y +YH+ C+K Y+ +
Sbjct: 129 DYLHYHIKCSKAYIHT 144


>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl
           transferase 2, TUTase 2, RET2 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 259

 Score = 23.7 bits (51), Expect = 5.4
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 8   LIVTTRQYVGNPIDCVHTKDIPEDVLNTYCWIHSTYTIRAAFK 50
           L+    Q VG+       + +  D +       +TY  R A +
Sbjct: 149 LLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQ 191


>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
          domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 40

 Score = 21.6 bits (46), Expect = 9.4
 Identities = 4/23 (17%), Positives = 6/23 (26%)

Query: 74 TYGYYHLSCTKGYLASFYAGNTC 96
            G +   C      +   G  C
Sbjct: 18 LPGTFECICGPDSALAGQIGTDC 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,173
Number of extensions: 16102
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 10
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)