Query psy1518
Match_columns 210
No_of_seqs 80 out of 82
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 22:34:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1518.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1518hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wuba_ b.61.6.1 (A:) Polyisop 31.6 16 0.0012 26.9 3.1 34 40-85 76-109 (176)
2 d1y0ga_ b.61.6.1 (A:) Lipid bi 20.5 32 0.0023 25.0 3.0 33 41-86 80-112 (169)
3 d1sqna_ a.123.1.1 (A:) Progest 13.3 36 0.0026 26.1 1.7 27 126-152 220-247 (251)
4 d1o51a_ d.58.5.4 (A:) Hypothet 12.6 27 0.002 24.2 0.7 34 5-38 9-44 (102)
5 d1xrxa1 a.43.1.7 (A:1-35) SeqA 10.9 23 0.0016 21.1 -0.2 23 4-26 12-34 (35)
6 d1zzma1 c.1.9.12 (A:1-259) Put 10.7 49 0.0036 25.3 1.7 57 1-57 1-70 (259)
7 d1hvya_ d.117.1.1 (A:) Thymidy 9.9 44 0.0032 27.3 1.2 13 103-115 1-13 (288)
8 d2qmsa1 d.93.1.1 (A:420-532) G 9.8 1.8E+02 0.013 19.3 4.4 55 148-207 42-96 (113)
9 d1x6oa1 b.34.5.2 (A:19-86) Euk 8.7 1.2E+02 0.0091 19.7 3.0 39 42-88 20-58 (68)
10 d1i3za_ d.93.1.1 (A:) Ews/fli1 8.2 2.3E+02 0.017 18.3 4.4 56 147-207 33-89 (103)
No 1
>d1wuba_ b.61.6.1 (A:) Polyisoprenoid-binding protein TTHA0802 (TT1927B) {Thermus thermophilus [TaxId: 274]}
Probab=31.61 E-value=16 Score=26.93 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=25.3
Q ss_pred cCCCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccC
Q psy1518 40 RYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEP 85 (210)
Q Consensus 40 r~pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~ 85 (210)
+||+-+| +.++|++... -...+-|.+|.||.+.+
T Consensus 76 ~~P~~~F-~st~i~~~~~-----------~~~~v~G~LTi~GvTk~ 109 (176)
T d1wuba_ 76 QYPEIRF-VSTQIEPLGG-----------NRYRIQGNLTIRDITKP 109 (176)
T ss_dssp TCCEEEE-EEEEEEEEET-----------TEEEEEEEEEETTEEEE
T ss_pred cCCceEE-EEEEEEEecC-----------CeEEEEEEEEECcccee
Confidence 4666666 7888887542 12489999999999984
No 2
>d1y0ga_ b.61.6.1 (A:) Lipid binding protein YceI {Escherichia coli [TaxId: 562]}
Probab=20.54 E-value=32 Score=25.03 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccCc
Q psy1518 41 YPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEPE 86 (210)
Q Consensus 41 ~pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~~ 86 (210)
||+ .-++.++|..... +..|-|.+|+||++.|-
T Consensus 80 ~P~-i~F~s~~v~~~~~------------~~~v~G~Lti~Gvt~pv 112 (169)
T d1y0ga_ 80 YPQ-ATFTSTSVKKDGD------------ELDITGDLTLNGVTKPV 112 (169)
T ss_dssp CCE-EEEEEEEEEEETT------------EEEEEEEEEETTEEEEE
T ss_pred Cce-EEEEEEEEEecCC------------eEEEEEEEEEEeEEEeE
Confidence 444 3457788876432 23899999999999853
No 3
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.27 E-value=36 Score=26.11 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=19.7
Q ss_pred CcccCCHHHHHHHHHHhc-cCCCCCCCc
Q psy1518 126 PWVDMPPLLKKVVARDLE-LENKTPEPN 152 (210)
Q Consensus 126 ~~v~~PPLlr~~i~~e~~-~~~~~~eP~ 152 (210)
..+++|||+++|+.++.- -.++...|+
T Consensus 220 ~~v~~p~Ll~E~l~~~~p~~~~~~~~~~ 247 (251)
T d1sqna_ 220 LSVEFPEMMSEVIAAQLPKILAGMVKPL 247 (251)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCcChhHHHHHHHHccCchhhcCCcCcC
Confidence 468899999999998863 224555665
No 4
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=12.63 E-value=27 Score=24.17 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=28.7
Q ss_pred eecccCCCCCCcHHH-HHhcCCCCcc-ceEEEeccc
Q psy1518 5 YIGRTTDFAGKTLWE-ILGNLKGYGV-GRLLYRQRF 38 (210)
Q Consensus 5 yIGr~~~~~GK~L~e-Il~~L~nfGV-GRlVtR~~~ 38 (210)
|++....+.|++|++ |+..++..|+ |.-|.|..+
T Consensus 9 y~~e~~~~~g~pl~~~iv~~ar~~giaGaTv~rgi~ 44 (102)
T d1o51a_ 9 YLGEKDKHSGKPLFEYLVKRAYELGMKGVTVYRGIM 44 (102)
T ss_dssp EEETTCEETTEEHHHHHHHHHHHTTCSCCEEEECSC
T ss_pred EEcchhcCCceEHHHHHHHHHHHCCCCcEEEEeeee
Confidence 778877889999976 7788889999 999998884
No 5
>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}
Probab=10.94 E-value=23 Score=21.08 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.3
Q ss_pred eeecccCCCCCCcHHHHHhcCCC
Q psy1518 4 KYIGRTTDFAGKTLWEILGNLKG 26 (210)
Q Consensus 4 kyIGr~~~~~GK~L~eIl~~L~n 26 (210)
+||--.|..-|.+-.+||++|-+
T Consensus 12 ~yIas~t~~iGEsaSdILRRll~ 34 (35)
T d1xrxa1 12 SYIASHTKHIGESASDILRRMLK 34 (35)
T ss_dssp HHHHTTCSSTTCCHHHHHHHHHT
T ss_pred HHHHHhhhHhccCHHHHHHHHhc
Confidence 57777888889999999998854
No 6
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}
Probab=10.65 E-value=49 Score=25.27 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=39.0
Q ss_pred CCeeeecccCCCC----CCcHHHHHhcCCCCccceEEEecc-cccCC--------CCceEEEEEEeeccC
Q psy1518 1 MPIKYIGRTTDFA----GKTLWEILGNLKGYGVGRLLYRQR-FQRYP--------EPCYFKILKVQPVQH 57 (210)
Q Consensus 1 ~~IkyIGr~~~~~----GK~L~eIl~~L~nfGVGRlVtR~~-~~r~p--------EP~Yw~ItkV~p~~~ 57 (210)
|.+|||=-..|+. ...+-+++.+.++.||+++|+=.+ +..|. -|..+-..-+.|...
T Consensus 1 ~~~k~ID~H~HLd~~~~~~d~~~~l~~a~~~gV~~~v~~~t~~~~~~~~~~l~~~~~~i~~~~GiHP~~~ 70 (259)
T d1zzma1 1 MICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGML 70 (259)
T ss_dssp CCCCEEESCBCTTSTTTTTCHHHHHHHHHHTTEEEEEEECCSGGGHHHHHHHHHHCTTEEEEECCCGGGG
T ss_pred CCCcEEEeCcCCCChhhCcCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCccccccccCCchHh
Confidence 7789997776553 456789999999999999987443 22221 144556667777643
No 7
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.93 E-value=44 Score=27.28 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=10.3
Q ss_pred CcchHHHHHHhcC
Q psy1518 103 PKHEEQEWLRRTG 115 (210)
Q Consensus 103 PKhEE~~f~~~~~ 115 (210)
|||+|.+|+++..
T Consensus 1 ~~h~e~qYl~l~~ 13 (288)
T d1hvya_ 1 PPHGELQYLGQIQ 13 (288)
T ss_dssp CCCTHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7899999987653
No 8
>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.77 E-value=1.8e+02 Score=19.27 Aligned_cols=55 Identities=7% Similarity=0.000 Sum_probs=35.6
Q ss_pred CCCCccceeeEEEecCccccccccccCCCCceeEeecCCCcCChhhhccchhHHHHhhhc
Q psy1518 148 TPEPNSFRMKVSFLETCNNLKREADENHPADIKIESFFGTPLSPELYEIKPEVAEYFKQK 207 (210)
Q Consensus 148 ~~eP~~~~l~l~~~~~~~~~~r~A~ege~pt~~~~~~~g~~~~p~l~~~~~~~~~~~~~~ 207 (210)
...|.++.|.+.. ......++|-..+......+..+-+..-+ .+..|+-+||++.
T Consensus 42 ~~~~g~y~LSv~~-~~~v~H~~I~~~~~~~~~~~~~~~~~~~F----~sl~~LI~~y~~~ 96 (113)
T d2qmsa1 42 QRNPQGFVLSLCH-LQKVKHYLILPSEEEGRLYFSMDDGQTRF----TDLLQLVEFHQLN 96 (113)
T ss_dssp SSCTTCEEEEEEE-TTEEEEEEEEEEESSSCEEEESSTTSSCB----SSHHHHHHHHTTC
T ss_pred cCCCCCEEEEEEe-CCeEEEEEEEEeCCCCeEEEEecCCCccc----CCHHHHHHHhccC
Confidence 3456667788765 45678888876555556666555555444 4447888998764
No 9
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Probab=8.74 E-value=1.2e+02 Score=19.72 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=26.7
Q ss_pred CCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccCceE
Q psy1518 42 PEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEPEVQ 88 (210)
Q Consensus 42 pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~~~~ 88 (210)
.+|| +|+.+..+-. .. ||--|++.-|+-.|-|++.+...
T Consensus 20 g~PC--kI~~istSk~----GK--HGhaK~~i~~idIFtgkK~~~v~ 58 (68)
T d1x6oa1 20 GRPC--KVIDLSVSKT----GK--HGHAKVSIVATDIFTGNRLEDQA 58 (68)
T ss_dssp TEEE--EEEEEEECCC----------CCEEEEEEEETTTCCEEEEEE
T ss_pred CEee--EEEEEeecCC----Cc--ccccEEEEEEEEcccCCEEEEEc
Confidence 3576 7888877653 44 88778999999999999875433
No 10
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.21 E-value=2.3e+02 Score=18.32 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=34.1
Q ss_pred CCCCCccceeeEEEecCccccccccccCCCCceeEeecCCCc-CChhhhccchhHHHHhhhc
Q psy1518 147 KTPEPNSFRMKVSFLETCNNLKREADENHPADIKIESFFGTP-LSPELYEIKPEVAEYFKQK 207 (210)
Q Consensus 147 ~~~eP~~~~l~l~~~~~~~~~~r~A~ege~pt~~~~~~~g~~-~~p~l~~~~~~~~~~~~~~ 207 (210)
+...|-++.|.+.. ....+.|+|.+.++. ...+. +.+ .....|.+..++-+||++.
T Consensus 33 S~~~~g~~~LSv~~-~~~v~H~~I~~~~~g-~~~~~---~~~~~~~~~F~sl~~LV~~y~~~ 89 (103)
T d1i3za_ 33 SESVPGALCLCVSF-KKLVYSYRIFREKHG-YYRIE---TDAHTPRTIFPNLQELVSKYGKP 89 (103)
T ss_dssp CSSSTTCEEEEEEC-SSSEEEEEEEECTTS-CEEEC---BCTTSCCCEESSSHHHHHHTTSS
T ss_pred cCCCCCCEEEEEEe-CCeEEEEEeEEcCCC-cEEEe---ccCCcCccccCCHHHHHHHhhhC
Confidence 34456667788776 456788888754432 22222 222 2334577779999999864
Done!