RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1518
         (210 letters)



>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 198

 Score = 25.6 bits (56), Expect = 3.9
 Identities = 10/70 (14%), Positives = 17/70 (24%)

Query: 128 VDMPPLLKKVVARDLELENKTPEPNSFRMKVSFLETCNNLKREADENHPADIKIESFFGT 187
            D    L   +  + + +      N         E     K E       D+ +      
Sbjct: 45  EDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITAD 104

Query: 188 PLSPELYEIK 197
              P+   IK
Sbjct: 105 ATGPKHMNIK 114


>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 120

 Score = 24.7 bits (54), Expect = 5.0
 Identities = 4/32 (12%), Positives = 15/32 (46%)

Query: 129 DMPPLLKKVVARDLELENKTPEPNSFRMKVSF 160
            +P      + + +++ N   +    R+K+++
Sbjct: 67  VVPAFNTGTITQVIKVLNPQKQQLRMRIKLTY 98


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 25.4 bits (55), Expect = 5.2
 Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 4/51 (7%)

Query: 145 ENKTPEPNSFRMKVSFLETCNNLKREADENHPADIKIESFFGTPLSPELYE 195
           E  +  P       +      +L  + D +     K++S     L     E
Sbjct: 28  EIYSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAKLQS----ILFSNYME 74


>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 133

 Score = 24.1 bits (52), Expect = 9.8
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 20/128 (15%)

Query: 85  PEVQEIFATSYKPDYRLIPKHEEQEWLRRTGKGEKKIQYIDPWVD-MPPLLKKVVAR--- 140
            +V+EIFA +    YRL+    E E L           +   +   + PLL+        
Sbjct: 5   EDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVL 64

Query: 141 -DLELENK----------TPEPNSFRMKVSFLETCNNLKREADENHPADIKIESFFGTP- 188
             L+ +N           +P+ +  R K+ +  T   LK+E    H   IK E F     
Sbjct: 65  FRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGH---IKDEVFGTVKE 121

Query: 189 -LSPELYE 195
            +S   Y+
Sbjct: 122 DVSLHGYK 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 867,208
Number of extensions: 42328
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 7
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)