BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15180
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 58/75 (77%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K FT EV ++ K N +I VY+V FLNEHPGGEEVL++Q G++ATEHFEDVGHS
Sbjct: 7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66
Query: 63 TEARELMKKYKVGTI 77
++ARE+MK+YKVG +
Sbjct: 67 SDAREMMKQYKVGEL 81
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
+ +EV + +VI G VY+V FLNEHPGGEEVLL+Q G +A+E FEDVGHS++
Sbjct: 12 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSD 71
Query: 65 ARELMKKYKVGTISDPENIPE 85
ARE++K+Y +G I + PE
Sbjct: 72 AREMLKQYYIGDIHPSDLKPE 92
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
+ +EV + +VI G VY++ FL+EHPGGEEVLL+Q G +ATE FEDVGHS +
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPD 66
Query: 65 ARELMKKYKVGTI 77
ARE++K+Y +G +
Sbjct: 67 AREMLKQYYIGDV 79
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
+ +EV + +VI G VY++ FL+EHPGGEEVLL+Q G +ATE FEDVGHS +
Sbjct: 5 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPD 64
Query: 65 ARELMKKYKVGTI 77
ARE++K+Y +G +
Sbjct: 65 AREMLKQYYIGDV 77
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 52/73 (71%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
+ +EV + +VI G VY++ FL+EHPGGEE+LL+Q G +ATE FED+GHS +
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPD 66
Query: 65 ARELMKKYKVGTI 77
ARE++K+Y +G +
Sbjct: 67 AREMLKQYYIGDV 79
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + D + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 63 TEARELMKKYKVGTI 77
T+AREL K Y +G +
Sbjct: 70 TDARELSKTYIIGEL 84
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + D + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 9 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 63 TEARELMKKYKVGTI 77
T+AREL K Y +G +
Sbjct: 69 TDARELSKTYIIGEL 83
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 52/73 (71%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
+ +EV + +VI G VY++ FL+EHPGGEE+LL+Q G +ATE FED+GHS +
Sbjct: 12 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPD 71
Query: 65 ARELMKKYKVGTI 77
ARE++K+Y +G +
Sbjct: 72 AREMLKQYYIGDV 84
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + D + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 TEARELMKKYKVGTI 77
T+AREL K Y +G +
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + D + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 TEARELMKKYKVGTI 77
T+AREL K Y +G +
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
+ +EV + +VI G VY++ FL+EHPGGEEVL +Q G +ATE FEDVGHS +
Sbjct: 7 YRLEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPD 66
Query: 65 ARELMKKYKVGTI 77
ARE++K+Y +G +
Sbjct: 67 AREMLKQYYIGDV 79
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro
Cytochrome B5, A Conformation, Ensemble Of 20
Structures
Length = 94
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + D + +++ VY++ +L EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 TEARELMKKYKVGTI 77
T+AREL K Y +G +
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 54/75 (72%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + ++I VY++ FL+EHPGGEEVLL+Q G +ATE FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
+ARE++K + +G +
Sbjct: 63 PDAREMLKTFIIGEL 77
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + D + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 TEARELMKKYKVGTI 77
T+ REL K Y +G +
Sbjct: 65 TDVRELSKTYIIGEL 79
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 51/73 (69%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
+ +EV + + +V+ G VY++ FL+EHPGGEEVL +Q G +ATE FEDVGHS +
Sbjct: 13 YRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPD 72
Query: 65 ARELMKKYKVGTI 77
ARE+ K+Y +G +
Sbjct: 73 AREMSKQYYIGDV 85
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
+ +EV + +V+ G VY++ FL+EHPGGEEVL +Q G +ATE FEDVGHS +
Sbjct: 12 YRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPD 71
Query: 65 ARELMKKYKVGTI 77
ARE+ K+Y +G +
Sbjct: 72 AREMSKQYYIGDV 84
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 69 TDARELSKTFIIGEL 83
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 65 TDARELSKTFIIGEL 79
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 63 TEARELMKKYKVGTISDPENIP 84
T+ARE+ K + +G + P++ P
Sbjct: 70 TDAREMSKTFIIGELH-PDDRP 90
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized
Microsomal Rabbit Cytochrome B5
Length = 104
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 70 TDARELSKTFIIGEL 84
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 5 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 65 TDARELSKTFIIGEL 79
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE++EDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ +L EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE++EDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEE L +Q G +ATE+FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEE L +Q G +ATE+FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEE L +Q G +ATE+FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FED GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FED GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EH GGEEVL +Q G +ATE+FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGE VL +Q G +AT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL Q G +AT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF
Cytochrome B5
Length = 82
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGE VL Q G +AT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGE VL Q G +AT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 63 TEARELMKKYKVGTI 77
T+AREL K + +G +
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 4 EFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHST 63
E T +E+ + K I I+G VYNV+P++ HPGGE+ L+ G + TE F+ V
Sbjct: 7 EVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWV 66
Query: 64 EARELMKKYKVGTIS 78
++K+ VG ++
Sbjct: 67 NYESMLKECLVGRMA 81
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVG---- 60
FT ++V E + I G VY++ P++ HPG ++L GQ +TE +E
Sbjct: 10 FTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEP 69
Query: 61 HSTEARELMKKYKVGTISD 79
HS+ A L+++Y +GT+ +
Sbjct: 70 HSSLAARLLQRYLIGTLEE 88
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVG-H 61
K++T +EV + + I+ G V+++ F EHPGG +V+L++ GQ+AT + + H
Sbjct: 4 KKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPH 62
Query: 62 STEARELMKKYKVGTI 77
A +MKK K I
Sbjct: 63 VKAADVVMKKLKQTCI 78
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
++ + EV + +VI G VY++ FL HPGG++V+ G++ T FE +
Sbjct: 4 QKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL--- 60
Query: 63 TEARELMKKY 72
A ++ KY
Sbjct: 61 -HAPNVIDKY 69
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 21 IVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFE 57
+VI G VY++ FL HPGG++V+ G++ T FE
Sbjct: 27 VVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 21 IVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFE 57
+VI G VY++ FL HPGG++V+ G++ T FE
Sbjct: 27 VVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 21 IVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFE 57
+VI G VY++ FL HPGG++V+ G++ T FE
Sbjct: 27 VVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 21 IVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFE 57
+VI G VY++ FL HPGG++V+ G++ T FE
Sbjct: 27 VVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 21 IVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFE 57
+VI G VY++ FL HPGG++V+ G++ T FE
Sbjct: 22 VVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 58
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 21 IVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFE 57
+VI G VY++ FL HPGG++V+ G++ T FE
Sbjct: 27 VVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain
Of Human Sulfite Oxidase
Length = 82
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 5 FTYKEVVESTDKTANLIVIKGV-VYNVAPFLNEHPGGEEVLLDQRGQNATEHFE--DVGH 61
+T +EV T + V G V++V F++ HPGG L+ G + V +
Sbjct: 7 YTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 66
Query: 62 STEARELMKKYKVGTI 77
+ REL+ +YK+G +
Sbjct: 67 QSHVRELLAQYKIGEL 82
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 4 EFTYKEVVESTDKTANLIVIKGV-VYNVAPFLNEHPGGEEVLLDQRGQNATEHF---EDV 59
E+T +EV + V G V++V F+ HPGG + +L G A E F V
Sbjct: 6 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAV 64
Query: 60 GHSTEARELMKKYKVGTISDPENIPES 86
EL+++YKVG +S P+ P +
Sbjct: 65 HGEPHVLELLQQYKVGELS-PDEAPAA 90
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 4 EFTYKEVVESTDKTANLIVIKGV-VYNVAPFLNEHPGGEEVLLDQRGQNATEHF---EDV 59
E+T +EV + V G V++V F+ HPGG + +L G A E F V
Sbjct: 6 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAV 64
Query: 60 GHSTEARELMKKYKVGTISDPENIPES 86
EL+++YKVG +S P+ P +
Sbjct: 65 HGEPHVLELLQQYKVGELS-PDEAPAA 90
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 4 EFTYKEVVESTDKTANLIVIKGV-VYNVAPFLNEHPGGEEVLLDQRGQNATEHF---EDV 59
E+T +EV + V G V++V F+ HPGG + +L G A E F V
Sbjct: 6 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAV 64
Query: 60 GHSTEARELMKKYKVGTISDPENIPES 86
EL+++YKVG +S P+ P +
Sbjct: 65 HGEPHVLELLQQYKVGELS-PDEAPAA 90
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 4 EFTYKEVVESTDKTANLIVIKGV-VYNVAPFLNEHPGGEEVLLDQRGQNATEHF---EDV 59
E+T +EV + V G V++V F+ HPGG + +L G A E F V
Sbjct: 6 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAV 64
Query: 60 GHSTEARELMKKYKVGTISDPENIPES 86
EL+++YKVG +S P+ P +
Sbjct: 65 HGEPHVLELLQQYKVGELS-PDEAPAA 90
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 4 EFTYKEVVESTDKTANLIVIKGV-VYNVAPFLNEHPGGEEVLLDQRGQNATEHF---EDV 59
E+T +EV + V G V++V F+ HPGG + +L G A E F V
Sbjct: 6 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAV 64
Query: 60 GHSTEARELMKKYKVGTISDPENIPES 86
EL+++YKVG +S P+ P +
Sbjct: 65 HGEPHVLELLQQYKVGELS-PDEAPAA 90
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 4 EFTYKEVVESTDKTANLIVIKGV-VYNVAPFLNEHPGGEEVLLDQRGQNATEHF---EDV 59
E+T +EV + V G V++V F+ HPGG + +L G A E F V
Sbjct: 6 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAV 64
Query: 60 GHSTEARELMKKYKVGTISDPENIPES 86
EL+++YKVG +S P+ P +
Sbjct: 65 HGEPHVLELLQQYKVGELS-PDEAPAA 90
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 63 TEARELMKKYKVGTISDPENIP 84
TEA EL + YK+G +S P N+P
Sbjct: 407 TEAAELHEIYKLGVVSIPTNMP 428
>pdb|3BS6|A Chain A, 1.8 Angstrom Crystal Structure Of The Periplasmic Domain
Of The Membrane Insertase Yidc
pdb|3BS6|B Chain B, 1.8 Angstrom Crystal Structure Of The Periplasmic Domain
Of The Membrane Insertase Yidc
Length = 280
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 45 LDQRGQNATEH-FEDVGHSTEARELMKKYKVGTISDPENIPESSTGG 90
LD N H F +ST E +KYK TI+D EN+ SS GG
Sbjct: 151 LDTGSSNFALHTFRGAAYSTP-DEKYEKYKFDTIADNENLNISSKGG 196
>pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 44 LLDQRGQNATEHFEDVGHSTEARELMKKYKVGTISDPENIPESSTGGSSSYD 95
LLD + +T+ F+D+ ++T EL K+ K T DP + S G SYD
Sbjct: 317 LLDTKLMASTQPFKDIINNTSLAELEKRLK-ETPFDPPKV--ESAEGFPSYD 365
>pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 44 LLDQRGQNATEHFEDVGHSTEARELMKKYKVGTISDPENIPE-SSTGGSSSYD 95
LLD + +T+ F+D+ ++T EL K+ K P N P+ S G SYD
Sbjct: 322 LLDTKLMASTQPFKDIINNTSLAELEKRLK----ETPFNPPKVESAEGFPSYD 370
>pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
Length = 647
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 27 VYNVAPFLNEHPGGEEVLLDQ 47
V N+ FLN+ PG E + L+Q
Sbjct: 261 VENIQRFLNDFPGAETIRLEQ 281
>pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
Length = 680
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 27 VYNVAPFLNEHPGGEEVLLDQ 47
V N+ FLN+ PG E + L+Q
Sbjct: 261 VENIQRFLNDFPGAETIRLEQ 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,973,864
Number of Sequences: 62578
Number of extensions: 155274
Number of successful extensions: 357
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 71
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 46 (22.3 bits)