RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15180
(131 letters)
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding
domain. This family includes heme binding domains from
a diverse range of proteins. This family also includes
proteins that bind to steroids. The family includes
progesterone receptors. Many members of this subfamily
are membrane anchored by an N-terminal transmembrane
alpha helix. This family also includes a domain in some
chitin synthases. There is no known ligand for this
domain in the chitin synthases.
Length = 74
Score = 93.0 bits (232), Expect = 3e-26
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 5 FTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHSTE 64
FT +EV + IVI G VY+V FL +HPGGE+V+L G++ATE FED HS
Sbjct: 1 FTLEEVKKHNKDGDCWIVINGKVYDVTRFLKDHPGGEDVILSAAGKDATEAFEDAIHSEA 60
Query: 65 ARELMKKYKVGTI 77
AR+L++KY+VG +
Sbjct: 61 ARKLLEKYRVGEL 73
>gnl|CDD|227599 COG5274, CYB5, Cytochrome b involved in lipid metabolism [Energy
production and conversion / Lipid metabolism].
Length = 164
Score = 77.6 bits (191), Expect = 4e-19
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 1 MSKEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVG 60
K T +EV + IVI G VY+V+ FL+EHPGGE+++ D G++AT+ F +
Sbjct: 48 SPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLH 107
Query: 61 HSTEARELMKKYKVGTISDPENIPESSTGGSSSYDGKYVPPKSTDEESGMPSWVVPLVFG 120
HS + L+K V + PE + +P T SWV +V+
Sbjct: 108 HSHQIGNLLKDVYVDQVHRPE---------------EELPLFKTAWYPLKVSWVPVVVYR 152
Query: 121 LLVVLVYQYF 130
L + F
Sbjct: 153 GLAACTGKPF 162
>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH].
Length = 888
Score = 67.0 bits (164), Expect = 4e-14
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 2 SKEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGH 61
SK++T EV + + + IV+ G VY+ FL +HPGG + +L G + TE F+ + H
Sbjct: 517 SKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-H 575
Query: 62 STEARELMKKYKVG--------TISDPENIPESSTGGSSSYDGKYVPP 101
S +A+++++ Y++G S + P S+ +S+ P
Sbjct: 576 SDKAKKMLEDYRIGELVTTGAAASSSASSHPLSAISTASALAAASPAP 623
>gnl|CDD|178739 PLN03198, PLN03198, delta6-acyl-lipid desaturase; Provisional.
Length = 526
Score = 43.5 bits (102), Expect = 7e-06
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 2 SKEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGH 61
SK EV IVIK VY+V+ F EHPGG V+ G++ T+ F H
Sbjct: 103 SKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGG-SVISTYFGRDGTDAFSSF-H 160
Query: 62 STEARELMKKYKVGTISDPENIPE 85
+ ++++ + +G + + E PE
Sbjct: 161 AASTWKILQDFYIGDVDNVEPTPE 184
>gnl|CDD|220890 pfam10861, DUF2784, Protein of Unknown function (DUF2784). This is
a family of uncharacterized protein. The function is not
known however it is conserved in Bacteria.
Length = 114
Score = 28.3 bits (64), Expect = 0.61
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 111 PSWVVP---LVFGLLVVLVYQY 129
P+W+ P LV GLLV+L Y
Sbjct: 86 PAWLTPAIQLVLGLLVLLSNIY 107
>gnl|CDD|107265 cd06270, PBP1_GalS_like, Ligand binding domain of DNA transcription
iso-repressor GalS, which is one of two regulatory
proteins involved in galactose transport and metabolism.
Ligand binding domain of DNA transcription
iso-repressor GalS, which is one of two regulatory
proteins involved in galactose transport and metabolism.
Transcription of the galactose regulon genes is
regulated by Gal iso-repressor (GalS) and Gal repressor
(GalR) in different ways, but both repressors recognize
the same DNA binding site in the absence of D-galactose.
GalS is a dimeric protein like GalR,and its major role
is in regulating expression of the high-affinity
galactose transporter encoded by the mgl operon, whereas
GalR is the exclusive regulator of galactose permease,
the low-affinity galactose transporter. GalS and GalR
are members of the LacI-GalR family of transcription
regulators and both contain the type I periplasmic
binding protein-like fold. Hence, they are homologous to
the periplasmic sugar binding of ABC-type transport
systems.
Length = 268
Score = 28.6 bits (65), Expect = 0.80
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 15/59 (25%)
Query: 33 FLNEH-PGGEE--VLLDQR--GQNATEHFEDVGHSTEARELMKKYKVGTISDPENIPES 86
+N H PG + + LD G ATEH ++GH K+ I+ P ++
Sbjct: 83 LINRHIPGLADRCIWLDNEQGGYLATEHLIELGHR----------KIACITGPLTKEDA 131
>gnl|CDD|233478 TIGR01577, oligosac_amyl, oligosaccharide amylase. The name of
this type of amylase is based on the characterization of
an glucoamylase family enzyme from Thermoactinomyces
vulgaris. The T. vulgaris enzyme was expressed in E.
coli and, like other glucoamylases, it releases
beta-D-glucose from starch. However, unlike previously
characterized glucoamylases, this T. vulgaris amylase
hydrolyzes maltooligosaccharides (maltotetraose,
maltose) more efficiently than starch (PMID: 11549021),
indicating this enzyme belongs to a class of
glucoamylase-type enzymes with
oligosaccharide-metabolizing activity.
Length = 616
Score = 28.7 bits (64), Expect = 0.87
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 101 PKSTDEESGMPSWVVPLVFGLLVVLVYQY 129
P+ D+E+G P+W VPL + + L+
Sbjct: 583 PEQVDKETGKPAWAVPLGWSHAMFLLTVL 611
>gnl|CDD|204751 pfam11808, DUF3329, Domain of unknown function (DUF3329). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria.
Length = 90
Score = 27.6 bits (62), Expect = 0.95
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 109 GMPSWVVPLVFGLLVVLVYQYFQ 131
G W L+ GLL +LV+ Y+Q
Sbjct: 27 GYLWWA--LLLGLLALLVWHYYQ 47
>gnl|CDD|176554 cd08613, GDPD_GDE4_like_1, Glycerophosphodiester
phosphodiesterase domain of uncharacterized bacterial
homologs of mammalian glycerophosphodiester
phosphodiesterase GDE4. This subfamily corresponds to
the glycerophosphodiester phosphodiesterase domain
(GDPD) present in uncharacterized bacterial homologs of
mammalian GDE4, a transmembrane protein whose cellular
function has not been elucidated yet.
Length = 309
Score = 28.1 bits (63), Expect = 1.3
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 20 LIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHST 63
L+ GV N L PGG+ LL RG T E V + T
Sbjct: 2 LLAAAGVWLNNTSLLAPPPGGKPKLLAHRGLAQTFDREGVENDT 45
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of
the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules,
and ions out of and between cells. The channel proteins
share a common fold: the N-terminal cytosolic portion
followed by six transmembrane helices, which might have
arisen through gene duplication. On the basis of
sequence similarity and functional characteristics, the
superfamily can be subdivided into two major groups:
water-selective channels called aquaporins (AQPs) and
glycerol uptake facilitators (GlpFs). AQPs are found in
all three kingdoms of life, while GlpFs have been
characterized only within microorganisms.
Length = 228
Score = 27.2 bits (61), Expect = 2.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
WV PL+ + LVY Y
Sbjct: 211 WVGPLIGAIAGALVYDYV 228
>gnl|CDD|224355 COG1438, ArgR, Arginine repressor [Transcription].
Length = 150
Score = 26.4 bits (59), Expect = 3.3
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 1 MSKEFTY-KEVVESTDKTANLIVIK 24
SK Y K++V S D+ NLIV+K
Sbjct: 74 TSKLKRYLKDLVLSIDRNGNLIVLK 98
>gnl|CDD|227552 COG5227, SMT3, Ubiquitin-like protein (sentrin) [Posttranslational
modification, protein turnover, chaperones].
Length = 103
Score = 26.0 bits (57), Expect = 3.8
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 38 PGGEEVLLDQRGQNATEHFEDVGHSTEARELMKKYKVGTISDPENIPESSTGGSSSYDGK 97
P + + L Q+ TE F + +T ++LM + ++ + +DGK
Sbjct: 20 PITKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFS-------RRQGKNMSSLRFLFDGK 72
Query: 98 YVPPKSTDEESGM 110
+ T + M
Sbjct: 73 RIDLDQTPGDLDM 85
>gnl|CDD|221306 pfam11906, DUF3426, Protein of unknown function (DUF3426). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 262 to 463 amino acids in
length.
Length = 149
Score = 26.1 bits (58), Expect = 5.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 10 VVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQ 50
+ + +++V+ G + N A F P E L D +GQ
Sbjct: 59 SLRQLPEGPDVLVLSGTLRNRADFPQALPALELTLTDAQGQ 99
>gnl|CDD|191115 pfam04862, DUF642, Protein of unknown function, DUF642. This
family represents a conserved region found in a number
of uncharacterized plant proteins.
Length = 323
Score = 26.2 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 91 SSSYDGKYVPPKSTDEESGMPSWVV 115
+S G +PPK D+ S +P W+V
Sbjct: 167 PNSTWGVLLPPKIEDDHSPLPGWMV 191
>gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional.
Length = 540
Score = 26.2 bits (58), Expect = 7.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 95 DGKYVPPKSTDEESGMPSWVVPLV 118
G+YV TD SGMP ++ V
Sbjct: 321 PGRYVSIAVTDTGSGMPPEILARV 344
>gnl|CDD|179394 PRK02251, PRK02251, putative septation inhibitor protein; Reviewed.
Length = 87
Score = 25.1 bits (55), Expect = 7.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 111 PSWVVPLVFGLLVV 124
P W VPL L+++
Sbjct: 31 PRWFVPLFVALMII 44
>gnl|CDD|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins.
This ClC family presents in bacteria, where it
facilitates acid resistance in acidic soil. Mutation of
this gene (sycA) in Rhizobium tropici CIAT899 causes
serious deficiencies in nodule development, nodulation
competitiveness, and N2 fixation on Phaseolus vulgaris
plants, due to its reduced ability for acid resistance.
This family is part of the ClC chloride channel
superfamiy. These proteins catalyse the selective flow
of Cl- ions across cell membranes and Cl-/H+ exchange
transport. These proteins share two characteristics that
are apparently inherent to the entire ClC chloride
channel superfamily: a unique double-barreled
architecture and voltage-dependent gating mechanism. The
gating is conferred by the permeating anion itself,
acting as the gating charge.
Length = 378
Score = 26.0 bits (58), Expect = 7.7
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 113 WVVPLVF--GLLVVLVYQYF 130
W++P + GLL+ +YQ F
Sbjct: 32 WLLPFLPLAGLLIGYLYQKF 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.132 0.376
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,734,652
Number of extensions: 584007
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 24
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)