RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15180
(131 letters)
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A
{Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A*
1icc_A* 1lj0_A* 2i89_A*
Length = 92
Score = 100 bits (251), Expect = 5e-29
Identities = 41/83 (49%), Positives = 56/83 (67%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
+ +EV + +VI G VY+V FLNEHPGGEEVLL+Q G +A+E FEDVGHS
Sbjct: 10 TYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHS 69
Query: 63 TEARELMKKYKVGTISDPENIPE 85
++ARE++K+Y +G I + PE
Sbjct: 70 SDAREMLKQYYIGDIHPSDLKPE 92
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport;
HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Length = 104
Score = 100 bits (250), Expect = 7e-29
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 63 TEARELMKKYKVGTI--SDPENIPESSTGGSSSYD 95
T+AREL K + +G + D I + S ++ D
Sbjct: 69 TDARELSKTFIIGELHPDDRSKITKPSESIITTID 103
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme,
electron transport; HET: HEM; 1.55A {Musca domestica}
Length = 88
Score = 99.6 bits (249), Expect = 9e-29
Identities = 46/79 (58%), Positives = 59/79 (74%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K FT EV ++ K N +I VY+V FLNEHPGGEEVL++Q G++ATEHFEDVGHS
Sbjct: 7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66
Query: 63 TEARELMKKYKVGTISDPE 81
++ARE+MK+YKVG + E
Sbjct: 67 SDAREMMKQYKVGELVAEE 85
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus}
SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A
1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A*
1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A*
1u9u_A* 1m20_A* ...
Length = 93
Score = 98.1 bits (245), Expect = 4e-28
Identities = 37/90 (41%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 TEARELMKKYKVGTISDPENIPESSTGGSS 92
T+AREL K + +G + P++ + + S
Sbjct: 65 TDARELSKTFIIGEL-HPDDRSKITKPSES 93
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox,
heme, endoplasmic reticulu flavoprotein, iron,
metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A
{Homo sapiens}
Length = 88
Score = 94.3 bits (235), Expect = 1e-26
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
E T +E+ + K I I+G VYNV+P++ HPGGE+ L+ G + TE F+ V
Sbjct: 6 IEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRW 65
Query: 63 TEARELMKKYKVGTISDPENIPE 85
++K+ VG ++ + +
Sbjct: 66 VNYESMLKECLVGRMAIKPAVLK 88
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown
function, HERC2 cytochrome domain, ligase binding,
phosphoprotein; NMR {Homo sapiens}
Length = 112
Score = 94.1 bits (234), Expect = 3e-26
Identities = 15/80 (18%), Positives = 28/80 (35%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
++ + VI G VY++ F + +L G++ E
Sbjct: 24 TLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQF 83
Query: 63 TEARELMKKYKVGTISDPEN 82
+ RE M + VG +P+
Sbjct: 84 EDTRESMHAFCVGQYLEPDQ 103
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM;
1.65A {Ectothiorhodospira shaposhnikovii} SCOP:
d.120.1.1
Length = 90
Score = 88.6 bits (220), Expect = 2e-24
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVG-- 60
FT ++V E + I G VY++ P++ HPG ++L GQ +TE +E
Sbjct: 8 PVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYG 67
Query: 61 --HSTEARELMKKYKVGTISD 79
HS+ A L+++Y +GT+ +
Sbjct: 68 EPHSSLAARLLQRYLIGTLEE 88
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM;
1.20A {Homo sapiens} SCOP: d.120.1.1
Length = 82
Score = 87.4 bits (217), Expect = 5e-24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 2 SKEFTYKEVVE-STDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQN--ATEHFED 58
+ +T +EV ++ +T + + V++V F++ HPGG L+ G
Sbjct: 4 THIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYA 63
Query: 59 VGHSTEARELMKKYKVGTI 77
V + + REL+ +YK+G +
Sbjct: 64 VHNQSHVRELLAQYKIGEL 82
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron
transport; HET: HEM; 1.80A {Ascaris suum}
Length = 82
Score = 78.8 bits (195), Expect = 9e-21
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 2 SKEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGH 61
K++T +EV + + I+ G V+++ F EHPGG +V+L++ GQ+AT + +
Sbjct: 3 DKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAP 61
Query: 62 STEAREL----MKKYKVGTI 77
+A ++ +K+ +G +
Sbjct: 62 HVKAADVVMKKLKQTCIGKV 81
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 62.0 bits (151), Expect = 2e-12
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 2 SKEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGH 61
++ + EV + +VI G VY++ FL HPGG++V+ G++ T FE +
Sbjct: 8 KQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHA 67
Query: 62 STEARE-LMKKYKVGTISDPENIPESSTGGSSSYDGKYVPPKSTDEESGMP 111
+ + + K+G + PE + + K + +S +P
Sbjct: 68 PNVIDKYIAPEKKLGPL-QGSMPPELVCPPYAPGETKEDIARKEQLKSLLP 117
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM
EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1
d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A*
3r19_A*
Length = 466
Score = 42.9 bits (101), Expect = 7e-06
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 2 SKEFTYKEVVE-STDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEH--FED 58
E+T +EV + + + V++V F+ HPGG + +L G
Sbjct: 4 YPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYA 63
Query: 59 VGHSTEARELMKKYKVGTISDPENIPESSTGGSSSYDGKYVP 100
V EL+++YKVG +S E + D P
Sbjct: 64 VHGEPHVLELLQQYKVGELSPDEAPAAPDAQDPFAGDPPRHP 105
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 28.2 bits (63), Expect = 0.95
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 63 TEARELMKKYKVGTISDPENIP 84
TE +E + Y + + P N P
Sbjct: 390 TEEKEFQEIYGMDVVVVPTNRP 411
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 27.8 bits (62), Expect = 1.0
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 24 KGVVYNVAPFLNEHPGGEEVLLDQRGQNATE--------HFEDVGHS-TEARELMKKYKV 74
VV +V + P + L D ++ + +G +L ++ V
Sbjct: 202 AKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQIDV 261
Query: 75 GTISDPE 81
S E
Sbjct: 262 ---SCRE 265
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 27.6 bits (62), Expect = 1.4
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 64 EARELMKKYKVGTISDPENIPESSTGGSSSYDGKYVPPKSTDEESGMPSWVVPLVFGLLV 123
E M+K G + E E G YDGK+ P + G S ++GL +
Sbjct: 716 MLIEGMRKPGGGFFTPAEMKAE---GRPMRYDGKWTAPAKDCDAKGQGSPFACYMYGLFL 772
Query: 124 VLV 126
V
Sbjct: 773 TEV 775
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 26.5 bits (59), Expect = 3.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 63 TEARELMKKYKVGTISDPENIP 84
TEA EL + YK+G +S P N+P
Sbjct: 407 TEAAELHEIYKLGVVSIPTNMP 428
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 26.4 bits (59), Expect = 3.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 63 TEARELMKKYKVGTISDPENIP 84
TEA E YK+ T+ P N P
Sbjct: 388 TEAFEFSSIYKLDTVVVPTNRP 409
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 25.9 bits (57), Expect = 4.1
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 56 FEDVGHSTEARELMKKYKVGTISDPENIPESSTGGSSSYDGKYVPPKSTDEESGMPSWVV 115
F +E+M K G S + + + G + P S G+ +
Sbjct: 223 FRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWS--GDMPVSCSLSRGLQVLLT 280
Query: 116 PLVFGLLVV 124
P++ +L
Sbjct: 281 PVLANILEA 289
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two
helices, protein transport; 1.20A {Homo sapiens} SCOP:
d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Length = 72
Score = 24.7 bits (54), Expect = 4.9
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 48 RGQNATEHFEDVGHSTEARELMKKYKVGTISDPENIPESSTGGSSSYDGKYVPPKSTDEE 107
GQ+ + + T +LMK Y I +DG+ + T +
Sbjct: 7 AGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQI-------RFRFDGQPINETDTPAQ 59
Query: 108 SGM 110
M
Sbjct: 60 LEM 62
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: BX7;
2.60A {Homo sapiens}
Length = 396
Score = 26.0 bits (57), Expect = 5.2
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 56 FEDVGHSTEARELMKKYKVGTISDPENIPESSTGGSSSYDGKYVPPKSTDEESGMPSWVV 115
F +E+M K G S + + + G + P S G+ +
Sbjct: 223 FRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWS--GDMPVSCSLSRGLQVLLT 280
Query: 116 PLVFGLLVV 124
P++ +L
Sbjct: 281 PVLANILEA 289
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical
protein, structural genomics, JOIN for structural
genomics; 2.40A {Pectobacterium atrosepticum SCRI1043}
SCOP: c.26.2.1
Length = 232
Score = 25.7 bits (57), Expect = 5.3
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 61 HSTE---ARELMKKYKVG--TISDPENIPESSTGGSSSYDGKYVPPKSTDEESGMPSWVV 115
H E A+EL +K + D + + SS P G+P+ V
Sbjct: 40 HRAEIEVAQELSQKLGAAAHKVLDVGLL--NELATSSLTRDSIPVPDYDANAQGIPNTFV 97
Query: 116 P 116
P
Sbjct: 98 P 98
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 25.6 bits (56), Expect = 5.6
Identities = 4/36 (11%), Positives = 9/36 (25%), Gaps = 4/36 (11%)
Query: 79 DPENIPESSTGGSSSYDGKYVPPKSTDEESGMPSWV 114
DP + ++Y + D +
Sbjct: 3 DPFTM----VSVDNTYQSLERELANDDPWRLDDNPF 34
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 25.4 bits (56), Expect = 6.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
WV P + L VL+Y +
Sbjct: 215 WVGPFIGAALAVLIYDFI 232
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 25.4 bits (56), Expect = 6.8
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 113 WVVPLVFGLLVVLVYQYFQ 131
W+ P++ L ++Q ++
Sbjct: 246 WLGPILGAFLAYSIWQMWK 264
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 24.9 bits (55), Expect = 8.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
WVVP+V G++ L+Y+
Sbjct: 212 WVVPIVGGIIGGLIYRTL 229
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 25.0 bits (55), Expect = 9.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
WV P+V +L ++Y Y
Sbjct: 208 WVGPIVGAVLAAILYFYL 225
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 25.0 bits (55), Expect = 9.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
WV P + + +QY
Sbjct: 269 WVGPFIGAAVAAAYHQYV 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.132 0.376
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,055,073
Number of extensions: 114771
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 38
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (23.9 bits)