RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15180
(131 letters)
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId:
9913]}
Length = 88
Score = 81.4 bits (201), Expect = 4e-22
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
K +T +E+ + + + +++ VY++ FL EHPGGEEVL +Q G +ATE+FEDVGHS
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 TEARELMKKYKVGTI--SDPENI 83
T+AREL K + +G + D I
Sbjct: 65 TDARELSKTFIIGELHPDDRSKI 87
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira
vacuolata [TaxId: 1054]}
Length = 81
Score = 78.0 bits (192), Expect = 8e-21
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVG-- 60
FT ++V E + I G VY++ P++ HPG ++L GQ +TE +E
Sbjct: 3 PVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYG 62
Query: 61 --HSTEARELMKKYKVGT 76
HS+ A L+++Y +GT
Sbjct: 63 EPHSSLAARLLQRYLIGT 80
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 76.1 bits (187), Expect = 4e-20
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 3 KEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGHS 62
+ +EV + +VI G VY++ FL+EHPGGEE+LL+Q G +ATE FED+GHS
Sbjct: 5 TYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHS 64
Query: 63 TEARELMKKYKVGTISDPENI 83
+ARE++K+Y +G + P ++
Sbjct: 65 PDAREMLKQYYIGDV-HPNDL 84
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 74.9 bits (184), Expect = 1e-19
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 2 SKEFTYKEVVE-STDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNAT--EHFED 58
+ +T +EV ++ +T + + V++V F++ HPGG L+ G
Sbjct: 2 THIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYA 61
Query: 59 VGHSTEARELMKKYKVGTI 77
V + + REL+ +YK+G +
Sbjct: 62 VHNQSHVRELLAQYKIGEL 80
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 91
Score = 70.7 bits (173), Expect = 7e-18
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 4 EFTYKEVVE-STDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATE--HFEDVG 60
E+T +EV + + + V++V F+ HPGG + +L G V
Sbjct: 4 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVH 63
Query: 61 HSTEARELMKKYKVGTISDPE--NIPES 86
EL+++YKVG +S E P++
Sbjct: 64 GEPHVLELLQQYKVGELSPDEAPAAPDA 91
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 97
Score = 67.3 bits (164), Expect = 2e-16
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 2 SKEFTYKEVVESTDKTANLIVIKGVVYNVAPFLNEHPGGEEVLLDQRGQNATEHFEDVGH 61
++ + EV + +VI G VY++ FL HPGG++V+ G++ T FE + H
Sbjct: 8 KQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-H 66
Query: 62 STEARE--LMKKYKVGTISDPENIPE 85
+ + + + K+G + PE
Sbjct: 67 APNVIDKYIAPEKKLGPL-QGSMPPE 91
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Length = 231
Score = 28.6 bits (63), Expect = 0.18
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
WVVP+V G++ L+Y+
Sbjct: 209 WVVPIVGGIIGGLIYRTL 226
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 26.2 bits (58), Expect = 0.50
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 48 RGQNATEHFEDVGHSTEARELMKKYKVGTISDPENIPESSTGGSSSYDGKYVPPKSTDEE 107
GQ+ + + T +LMK Y E S +DG+ + T +
Sbjct: 7 AGQDGSVVQFKIKRHTPLSKLMKAYC-------ERQGLSMRQIRFRFDGQPINETDTPAQ 59
Query: 108 SGM 110
M
Sbjct: 60 LEM 62
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 249
Score = 27.0 bits (59), Expect = 0.63
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
WV P + L VL+Y +
Sbjct: 215 WVGPFIGAALAVLIYDFI 232
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 294
Score = 26.2 bits (57), Expect = 1.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 42 EVLLDQRGQNATEHFEDVGHSTEARELMKKYKVGTISDPENI 83
E+L + Q EH +VGH +A E ++K+ +DP N
Sbjct: 243 ELLQQRGAQYPAEH--NVGHLYKAPETLQKFY--RENDPTNS 280
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 25.9 bits (56), Expect = 1.6
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
P+V ++ Y+
Sbjct: 232 LFGPIVGAIVGAFAYRKL 249
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
9913]}
Length = 234
Score = 25.8 bits (56), Expect = 1.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 113 WVVPLVFGLLVVLVYQYF 130
WV P++ L L+Y +
Sbjct: 200 WVGPVIGAGLGSLLYDFL 217
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 24.2 bits (52), Expect = 5.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 62 STEARELMKKYKVGTISDPEN 82
TEA EL + YK+G +S P N
Sbjct: 268 QTEAAELHEIYKLGVVSIPTN 288
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 92
Score = 23.0 bits (49), Expect = 7.9
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 53 TEHFEDVGHSTEARELMKKYKVGTISDPENIPESSTGGSSSYDGKYVP 100
T E +G + + + I P+ + + TG S + +G +
Sbjct: 3 TGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLT 50
>d1bm8a_ d.34.1.1 (A:) DNA-binding domain of Mlu1-box binding
protein MBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 99
Score = 23.2 bits (50), Expect = 8.2
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 81 ENIPESSTGGSSSYDGKYVPP---KSTDEESGMPSWVVPL 117
+ E GG Y G +VP K E+ + + PL
Sbjct: 57 KETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPL 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.132 0.376
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,261
Number of extensions: 21196
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 18
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (22.5 bits)