BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15181
         (289 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SRQ|A Chain A, Crystal Structure Of The Rap1gap Catalytic Domain
 pdb|1SRQ|B Chain B, Crystal Structure Of The Rap1gap Catalytic Domain
 pdb|1SRQ|C Chain C, Crystal Structure Of The Rap1gap Catalytic Domain
 pdb|1SRQ|D Chain D, Crystal Structure Of The Rap1gap Catalytic Domain
          Length = 341

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 63  QGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLT 122
           +  R I   D        K GV+Y   GQ  SE+E+      S  +++FL+ LG  +KL 
Sbjct: 102 KASRLIVTFDEHVISNNFKFGVIYQKLGQ-TSEEELFSTNEESPAFVEFLEFLGQKVKLQ 160

Query: 123 DADPLNVFLGGLE-TNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
           D      F GGL+ T+G  G  +        +++FHV+T +P  E D     +K++IGND
Sbjct: 161 D---FKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGND 217

Query: 182 YVTIVYNESGVDY 194
            V +V+ +    +
Sbjct: 218 IVAVVFQDENTPF 230


>pdb|3BRW|A Chain A, Structure Of The Rap-Rapgap Complex
 pdb|3BRW|B Chain B, Structure Of The Rap-Rapgap Complex
 pdb|3BRW|C Chain C, Structure Of The Rap-Rapgap Complex
          Length = 341

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 5/133 (3%)

Query: 63  QGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLT 122
           +  R I   D        K GV+Y   G   SE+E+      S  +++FL+ LG  +KL 
Sbjct: 102 KASRLIVTFDEHVISNNFKFGVIYQKLG-ATSEEELFSTNEESPAFVEFLEFLGQKVKLQ 160

Query: 123 DADPLNVFLGGLE-TNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
           D      F GGL+ T+G  G  +        +++FHV+T +P  E D     +K++IGND
Sbjct: 161 D---FKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGND 217

Query: 182 YVTIVYNESGVDY 194
            V +V+ +    +
Sbjct: 218 IVAVVFQDENTPF 230


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,294,321
Number of Sequences: 62578
Number of extensions: 393876
Number of successful extensions: 890
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 4
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)