Query psy15181
Match_columns 289
No_of_seqs 199 out of 435
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 22:36:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3687|consensus 100.0 3.6E-68 7.8E-73 546.3 10.7 241 27-275 1391-1662(1697)
2 PF02145 Rap_GAP: Rap/ran-GAP; 100.0 2E-48 4.2E-53 344.1 12.4 157 98-265 1-188 (188)
3 KOG3686|consensus 100.0 2.9E-42 6.3E-47 351.9 16.4 200 64-275 247-477 (740)
4 KOG3652|consensus 98.4 5.7E-07 1.2E-11 93.0 7.0 93 64-160 855-981 (1215)
5 PRK03719 ecotin; Provisional 61.9 5.2 0.00011 35.8 1.9 47 115-166 69-116 (166)
6 cd00242 Ecotin Protease Inhibi 35.8 22 0.00048 30.8 1.6 46 115-165 38-84 (136)
7 KOG3686|consensus 35.3 11 0.00023 40.8 -0.5 118 64-202 529-648 (740)
8 PF03974 Ecotin: Ecotin; Inte 34.8 13 0.00028 31.8 -0.0 46 115-165 36-82 (128)
9 PF10764 Gin: Inhibitor of sig 27.2 51 0.0011 23.4 2.0 22 94-115 24-45 (46)
10 PF06145 Corona_NS1: Coronavir 26.4 51 0.0011 21.2 1.6 18 196-220 12-29 (29)
No 1
>KOG3687|consensus
Probab=100.00 E-value=3.6e-68 Score=546.31 Aligned_cols=241 Identities=46% Similarity=0.799 Sum_probs=223.3
Q ss_pred CCCCccccCchHHHHhhhcCCCCCCCCCcceecCchH--HHHHHHhhcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCC
Q psy15181 27 REPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQ--GKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYG 104 (289)
Q Consensus 27 ~~~~~~~~~Ps~~~lql~~~~~~~~~~~~pi~lp~~~--~~r~L~~LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~g 104 (289)
..++-++++|||+|+|+|+++++|..+++|+++|++. |.||++.||++|++|+||+||+|||.||.++|.+||+|++|
T Consensus 1391 ~~~~~p~~npsf~F~qly~~p~~g~~~n~PLllp~e~~s~~rAVSl~D~iP~~EthKiGvlYVG~gQ~n~E~~IL~N~hg 1470 (1697)
T KOG3687|consen 1391 NAEKVPGINPSFVFLQLYHSPFFGDESNKPLLLPNESQSFERAVSLLDQIPSYETHKIGVLYVGEGQSNSELAILSNEHG 1470 (1697)
T ss_pred cCCCCCCCCcchhhHhhhcCcccccccCCceecCCcchhHHHHHHHHHhCCccccceeeEEEEcccccccHHHHHhcCCc
Confidence 3344556999999999999999999999999999986 99999999999999999999999999999899999999999
Q ss_pred ChhHHHHHHhcCCeEEcCCCCCCCccccCCCCCCCCccEEEEeecCceeEEEEEcccCCC-CCCCcchhhhhcccCCCeE
Q psy15181 105 SIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPT-LESDPNCNNKKKNIGNDYV 183 (289)
Q Consensus 105 S~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~~~~dG~~t~y~~d~~~EI~FHVaTlMP~-~~~D~q~~~KKRHIGND~V 183 (289)
|.+|.+||.+||++|+||+++ .+.|.||||++|.||.|+|+|.|+++|++||||||||+ .++||.|.+||||||||||
T Consensus 1471 S~ry~eFL~glGTL~eLK~~q-~~~~~ggLDR~g~DG~FAYcWKDdI~Q~vFH~aTlMPTN~~dDP~C~~KKrHIGNDFV 1549 (1697)
T KOG3687|consen 1471 SYRYTEFLTGLGTLIELKDCQ-PDVYLGGLDRCGEDGQFAYCWKDDIMQAVFHIATLMPTNDVDDPRCDKKKRHIGNDFV 1549 (1697)
T ss_pred cHHHHHHHhCcceEEEecccc-ccceeeeecccCCCCceEEEehhhhHHHhhhhhhccccccccCCCCchhhhhcCCceE
Confidence 999999999999999999984 57799999999999999999999999999999999998 7789999999999999999
Q ss_pred EEEEeCCCCccccccccccCCCcccceeeeEEEEEeecCC--eEEEEEecCC-------Ccccccch----------hhh
Q psy15181 184 TIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYN--IRTVKVRLAG-------CPCFVTDK----------IDH 244 (289)
Q Consensus 184 ~IVfnEs~~~y~~~tI~sq~~p~~Fn~v~~~IVI~P~~~~--~v~V~~r~~g-------~~~ivs~~----------l~a 244 (289)
.|||||||.+|+.+||++| |||| +|||+|++.+ ++.+++|++- .+|||||. |||
T Consensus 1550 ~IIyNESGeEY~l~TI~gQ-----FNfv--~VIVtPld~~~nRv~~q~r~~~~KFv~~~~YkIVSdr~lP~~aRqmaLhA 1622 (1697)
T KOG3687|consen 1550 SIIYNESGEEYKLGTIKGQ-----FNFV--HVIVTPLDYECNRVSLQCRKDMEKFVDTSVYKIVSDRNLPFVARQMALHA 1622 (1697)
T ss_pred EEEecCCccccccCccccc-----cceE--EEEeccchhhhhHHHHHHHHHHHhheeeeeEEEecCCcchHHHHHHHHHH
Confidence 9999999999999999999 9999 9999999988 9999999882 28999998 899
Q ss_pred ccchhhhhc---------CchhhHHHHhhhhhhhhhhccc
Q psy15181 245 NSKSVWIHQ---------NPFSYLEHIKNLPTKLQLSSCL 275 (289)
Q Consensus 245 ~~as~~~~~---------~~~~Rlr~ik~lr~r~~~~~~~ 275 (289)
|+||+..|+ .|.+|||++||||+|+.++..-
T Consensus 1623 n~aS~VYhs~~~~~~Y~s~W~ERLR~LKRLR~K~~e~~~~ 1662 (1697)
T KOG3687|consen 1623 NMASQVYHSSNPTDIYPSKWIERLRHLKRLRQKICEEAAY 1662 (1697)
T ss_pred HHHHHHHhccCcCCcchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999995333 1669999999999999876543
No 2
>PF02145 Rap_GAP: Rap/ran-GAP; InterPro: IPR000331 The Rap/ran-GAP domain is found in the GTPase activating protein (GAP) responsible for the activation of nuclear Ras-related regulatory proteins Rap1, Rsr1 and Ran in vitro converting it to the putatively inactive GDP-bound state [, ]. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. RanGAP is a leucine rich repeat containing protein which forms a highly curved crescent. Each LRR forms a short beta-strand and a longer alpha-helix that results in a beta-alpha hairpin motif []. The domain is also present in tuberin (a tuberous sclerosis homologue protein) that specifically stimulates the intrinsic GTPase activity of Ras-related protein Rap1A suggesting a possible mechanism for its role in the regulation of cellular growth.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 1SRQ_C 3BRW_B.
Probab=100.00 E-value=2e-48 Score=344.13 Aligned_cols=157 Identities=34% Similarity=0.552 Sum_probs=105.5
Q ss_pred hhhCCCCChhHHHHHHhcCCeEEcCCCCCCCccccCCCCCC-CCccEEEEeecCceeEEEEEcccCCCCCCCcchhhhhc
Q psy15181 98 ILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNG-SDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKK 176 (289)
Q Consensus 98 ILsN~~gS~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~~~-~dG~~t~y~~d~~~EI~FHVaTlMP~~~~D~q~~~KKR 176 (289)
||+|++||++|++||++|||+|+|++ |.||.||||+.+ ++|+|+|||+++..|||||||||||+.++|+||.+|||
T Consensus 1 il~N~~~S~~f~~Fl~~LG~~V~L~~---~~~y~GGLD~~~~~~G~~s~y~~~~~~EimFHVstlmP~~~~d~q~~~KKr 77 (188)
T PF02145_consen 1 ILSNTEGSPRFEEFLSSLGWKVDLKG---HKGYSGGLDTKNDTTGEYSYYYADDIYEIMFHVSTLMPNNENDPQQLEKKR 77 (188)
T ss_dssp HHT--S--HHHHHHHHHHSEEEESTT-----S--TT--SSS-TT-SEEEEEESSS-EEEEEECCCS---TT-SSSHHHHH
T ss_pred CCCCCcCCHHHHHHHHHhCCEEEcCC---CcCcCCCCCccccCCCCEEEEEEeCCEEEEEEecccCCCCCCChHHHHHHH
Confidence 79999999999999999999999998 579999999854 69999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEEeCCCCccccccccccCCCcccceeeeEEEEEeecCC-------eEEEEEecC----C---Ccccccch-
Q psy15181 177 NIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYN-------IRTVKVRLA----G---CPCFVTDK- 241 (289)
Q Consensus 177 HIGND~V~IVfnEs~~~y~~~tI~sq~~p~~Fn~v~~~IVI~P~~~~-------~v~V~~r~~----g---~~~ivs~~- 241 (289)
|||||+|+|||+|++++|+|++|+|| |||| +|||+|+.++ +|.|..|++ | ...+|+++
T Consensus 78 hIGND~V~IVf~E~~~~y~~~~i~Sq-----Fn~V--~IvI~p~~~~~~~~~~y~V~v~~k~~v~~fgP~~~~~~v~~~~ 150 (188)
T PF02145_consen 78 HIGNDIVVIVFNESGQPYDPSTIKSQ-----FNHV--FIVIYPLSNGSSKSPLYRVSVVRKDDVPPFGPLLPESIVSKKS 150 (188)
T ss_dssp HHTT-SEEEEEESS-----GGGS--S-----S--E--EEEEEEES--SSSS-EEEEEEEE-TTS---SS---SS-EEESH
T ss_pred HhcCCEEEEEEeCCCCccChhhcccc-----CceE--EEEEEecccCCCCCceEEEEEEEcCCCCCcCCCCCCCeECHHH
Confidence 99999999999999999999999999 9999 9999999876 455555655 3 25667766
Q ss_pred ---------hhhccchhhhh-----cCchhhH-HHHhhh
Q psy15181 242 ---------IDHNSKSVWIH-----QNPFSYL-EHIKNL 265 (289)
Q Consensus 242 ---------l~a~~as~~~~-----~~~~~Rl-r~ik~l 265 (289)
|+|+.|+. .+ +.+.+|+ ++||+|
T Consensus 151 l~~~vr~~~ina~~a~~-~~~~~f~~~~~~~r~~~i~~i 188 (188)
T PF02145_consen 151 LPEFVRQKAINAERAAR-SSQPQFASPWRRRRQRLIKDI 188 (188)
T ss_dssp HHHHHHHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH-HHhHHhhhHHHHHHHHHhccC
Confidence 56665555 22 1123444 777765
No 3
>KOG3686|consensus
Probab=100.00 E-value=2.9e-42 Score=351.86 Aligned_cols=200 Identities=30% Similarity=0.444 Sum_probs=168.7
Q ss_pred HHHHHHhhcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCCChhHHHHHHhcCCeEEcCCCCCCCccccCCCC-CCCCcc
Q psy15181 64 GKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLET-NGSDGK 142 (289)
Q Consensus 64 ~~r~L~~LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~gS~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~-~~~dG~ 142 (289)
+.++|..||+...+.+|||||+||+.||+ +|+||++|+.|||+|.+||++|||.|+|||| .||.||||+ ++++|.
T Consensus 247 ~~~~l~~lDe~~~~~~~K~gIly~k~GQ~-teEem~~Ne~~sPaF~eFL~~LGq~V~Lkgf---~gyrggLdtk~dsTG~ 322 (740)
T KOG3686|consen 247 VERALVILDEQVISITHKFGILYVKTGQK-TEEEMYNNERGSPAFEEFLALLGQFVSLKGF---QGYRGGLDTKNDSTGT 322 (740)
T ss_pred HHHHHHhhhhhhheeeeeEEEEEecccCc-cHHHHhcCCccChhHHHHHHHhhceeeccch---HHHhhhhcccCCCCCc
Confidence 89999999999999999999999999998 6999999999999999999999999999995 799999995 789999
Q ss_pred EEEEeecCceeEEEEEcccCCCCCCCcchhhhhcccCCCeEEEEEeCCCCccccccccccCCCcccceeeeEEEEEeecC
Q psy15181 143 YTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDY 222 (289)
Q Consensus 143 ~t~y~~d~~~EI~FHVaTlMP~~~~D~q~~~KKRHIGND~V~IVfnEs~~~y~~~tI~sq~~p~~Fn~v~~~IVI~P~~~ 222 (289)
.+.||.....||||||+||||+.++|+||..||||||||+|.|||.|.+.||.|++|+|+ |.|| +|||+|+..
T Consensus 323 ~svY~~~~~~EImFHvst~lp~~~~d~qq~~r~rHignDiV~ivfqe~~~pf~p~~i~Sh-----F~hv--f~~v~~~~~ 395 (740)
T KOG3686|consen 323 TSIYTQYQKLEIMFHVSTMLPYTDGDPQQLQRKRHIGNDIVTIVFQEEGTPFSPGTIRSH-----FQHV--FIVVRPHGP 395 (740)
T ss_pred eeeEEeecceEEEEecCccCCCCCCCHHHhccccccCcceEEEEeecCCCCCCCccchhc-----ccee--EEEEEEcCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999 999999984
Q ss_pred C------eEEEEEecC----CC----c-ccccchhhhc--cchhhhhcCc-------------hhhHHHHhhhhhhhhhh
Q psy15181 223 N------IRTVKVRLA----GC----P-CFVTDKIDHN--SKSVWIHQNP-------------FSYLEHIKNLPTKLQLS 272 (289)
Q Consensus 223 ~------~v~V~~r~~----g~----~-~ivs~~l~a~--~as~~~~~~~-------------~~Rlr~ik~lr~r~~~~ 272 (289)
+ ++.|..+++ |. + .+...+...+ +|.+ |++.+ +.|-.-++-|-+++...
T Consensus 396 ~t~~~~y~~~it~~~~vp~fgp~l~~~~vf~~~~~f~~fLlak~-INae~A~~~s~kf~~~~~rtR~~lL~~L~e~~~~~ 474 (740)
T KOG3686|consen 396 CTENVKYRVAITSKDDVPFFGPPLPTGDVFKKGTVFRNFLLAKA-INAERAAGESIKFLQMADRTRDDLLDDLPENLVPS 474 (740)
T ss_pred CCcccceeEEeecCCccCCcCCCCCCccccccccHHHHHHHHHH-hcccchhcchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4 555655666 21 1 1222221111 3344 34433 25666677777776666
Q ss_pred ccc
Q psy15181 273 SCL 275 (289)
Q Consensus 273 ~~~ 275 (289)
..+
T Consensus 475 ~~~ 477 (740)
T KOG3686|consen 475 TTD 477 (740)
T ss_pred ccc
Confidence 555
No 4
>KOG3652|consensus
Probab=98.39 E-value=5.7e-07 Score=92.96 Aligned_cols=93 Identities=27% Similarity=0.433 Sum_probs=78.2
Q ss_pred HHHHHHh-hcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCC----ChhHHHHHHhcCCeEEcCCCCCCCccccCCCCC-
Q psy15181 64 GKRAISN-LDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYG----SIRYMDFLQRLGTLIKLTDADPLNVFLGGLETN- 137 (289)
Q Consensus 64 ~~r~L~~-LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~g----S~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~~- 137 (289)
|.++|.. ||-.|.|-+..+-|.|+++||. .-+|||.|.+. -++|-+||..|||-|++- .|+||+|-..+.
T Consensus 855 FfdDig~tlD~~P~RpfdTafIFYmK~GQk-~~qdILeNaensqn~~p~F~eFL~nLG~~idiG---rH~gWTGHvSTaw 930 (1215)
T KOG3652|consen 855 FFDDIGETLDCAPARPFDTAFIFYMKEGQK-IAQDILENAENSQNSCPDFCEFLANLGEGIDIG---RHDGWTGHVSTAW 930 (1215)
T ss_pred HHHhhhhhcccccCCccceEEEEEeccchh-hHHHHHHhHhhccccChHHHHHHHhcccceeec---cCCCccceeeeee
Confidence 7888887 9999999999999999999998 57899999764 589999999999999994 599999976541
Q ss_pred ---------C-----C----------Cc-cEEEEeec---CceeEEEEEcc
Q psy15181 138 ---------G-----S----------DG-KYTYSWQD---EVMQVIFHVAT 160 (289)
Q Consensus 138 ---------~-----~----------dG-~~t~y~~d---~~~EI~FHVaT 160 (289)
+ . || +.+.||+| ..+||.|-+++
T Consensus 931 SinccddgEgk~QE~~d~eD~gasIfdG~k~aL~~aDeqgalsEiAFlmPs 981 (1215)
T KOG3652|consen 931 SINCCDDGEGKLQEEADGEDHGASIFDGIKHALWWADEQGALSEIAFLMPS 981 (1215)
T ss_pred eeccccccchhhhhhcccccchhhhhcchhhheeeecccCccceeEEeccC
Confidence 0 1 22 25779999 88999998887
No 5
>PRK03719 ecotin; Provisional
Probab=61.94 E-value=5.2 Score=35.76 Aligned_cols=47 Identities=28% Similarity=0.421 Sum_probs=34.0
Q ss_pred cCCeEEcCCCCCCCccccCCCCCCCCc-cEEEEeecCceeEEEEEcccCCCCC
Q psy15181 115 LGTLIKLTDADPLNVFLGGLETNGSDG-KYTYSWQDEVMQVIFHVATMMPTLE 166 (289)
Q Consensus 115 LG~~V~Lk~~~~~~gy~GGLD~~~~dG-~~t~y~~d~~~EI~FHVaTlMP~~~ 166 (289)
.|..+.+ ||+.| .+.|.|+.....| -|.||+=+.+.+. .+|||.+.+
T Consensus 69 iGk~~~v-DCN~~-~lgG~leektl~GwGY~YY~v~~~~~~---~sTlMaCp~ 116 (166)
T PRK03719 69 IGQTLEV-DCNQH-RLGGELEEKTLEGWGYDYYVVDKVSGP---PSTMMACPD 116 (166)
T ss_pred cCCEEEe-ccCcc-EecceeEEEeecCCCceeEEEeccCCc---cceeecCCC
Confidence 5888877 68633 4656687766788 5899987877664 899998743
No 6
>cd00242 Ecotin Protease Inhibitor Ecotin; homodimeric protease inhibitor. Protease Inhibitor Ecotin; homodimeric protease inhibitor which binds two chymotrypsin-like serine proteases to form a heterotetramer. Found in bacterial periplasm. Inhibits a broad range of serine proteases including collagenase, trypsin, chymotrypsin, elastase, and factor Xa but not thrombin. Inhibition mechanism involves binding at two different protease contact sites: the primary and secondary binding sites. Primary site loops of ecotin bind to the active site of target proteases in a substrate-like manner with the P1 residue in ecotin mimicking the interactions of a canonical P1 substrate residue.
Probab=35.76 E-value=22 Score=30.80 Aligned_cols=46 Identities=30% Similarity=0.469 Sum_probs=29.7
Q ss_pred cCCeEEcCCCCCCCccccCCCCCCCCcc-EEEEeecCceeEEEEEcccCCCC
Q psy15181 115 LGTLIKLTDADPLNVFLGGLETNGSDGK-YTYSWQDEVMQVIFHVATMMPTL 165 (289)
Q Consensus 115 LG~~V~Lk~~~~~~gy~GGLD~~~~dG~-~t~y~~d~~~EI~FHVaTlMP~~ 165 (289)
+|..+.+ ||+. ..+.|.|+.....|- |.||-=+...+. .+|||.+.
T Consensus 38 iGk~~~v-DCN~-~~lgG~leektl~GwGy~YY~v~~~~~~---~sT~MaC~ 84 (136)
T cd00242 38 IGRTLEV-DCNQ-HRLGGNLEEKTLEGWGYDYYVVDKVSSP---VSTMMACP 84 (136)
T ss_pred cCCEEEE-eccc-ccccceEEEEEecCCCceEEEEecCCCC---ceeeeeCC
Confidence 4777777 6753 356666887555664 777644444443 79999874
No 7
>KOG3686|consensus
Probab=35.29 E-value=11 Score=40.77 Aligned_cols=118 Identities=25% Similarity=0.287 Sum_probs=83.1
Q ss_pred HHHHHHhhcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCC--ChhHHHHHHhcCCeEEcCCCCCCCccccCCCCCCCCc
Q psy15181 64 GKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYG--SIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDG 141 (289)
Q Consensus 64 ~~r~L~~LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~g--S~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~~~~dG 141 (289)
+.+....++....++.|++.+. . ...+|++++.. |..+..|=..++|.+..-+ +.+|+||+.+.
T Consensus 529 ~~g~~~~~~v~~s~~~~~v~fn------~-~~~~ii~~tt~~~sl~~~~~~~~~~~~~~~~~---l~~~t~G~e~~---- 594 (740)
T KOG3686|consen 529 FPGISPHLDVLSSREVHKVAFN------E-DRADILSWTTASASLQFDSFRSELGWEVKVGR---LDGYTGGLEVE---- 594 (740)
T ss_pred ccCcCccceeeecccccceEEe------c-ccccccccccccccceeeeccccceeeeeecc---chhhccCceee----
Confidence 6667777888888899998887 3 56789999864 6667777777788777654 67999998864
Q ss_pred cEEEEeecCceeEEEEEcccCCCCCCCcchhhhhcccCCCeEEEEEeCCCCcccccccccc
Q psy15181 142 KYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVR 202 (289)
Q Consensus 142 ~~t~y~~d~~~EI~FHVaTlMP~~~~D~q~~~KKRHIGND~V~IVfnEs~~~y~~~tI~sq 202 (289)
+-+.+ ..+..++.|||.++---. -+++..|++|+-+.+.-++. ..+...|+..+
T Consensus 595 ~~~~~-r~~~~~~~fhv~~e~~~~-----~~e~~~~~~~a~lg~~~~~~-~~~~~~Tla~~ 648 (740)
T KOG3686|consen 595 TRALY-RADAEAVGFHVSTEGNGD-----VQEKWKHAGNAELGSRENTR-KKYTRETLATK 648 (740)
T ss_pred eeeec-ccccccccceecccccce-----eeccccccccccccceeeee-hhhhhhhhhhh
Confidence 22333 455567999998754321 24688999999983333333 35777777777
No 8
>PF03974 Ecotin: Ecotin; InterPro: IPR023189 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents proteinase inhibitors that belong to MEROPS inhibitor family I11, clan IN. Ecotins are dimeric periplasmic proteins from Escherichia coli and related Gram-negative bacteria that have been shown to be potent inhibitors of many trypsin-fold serine proteases of widely varying substrate specificity, which belong to MEROPS peptidase family S1 (IPR001254 from INTERPRO) []. Phylogenetic analysis suggested that ecotin has an exogenous target, possibly neutrophil elastase. Ecotin from E. coli, Yersinia pestis, and Pseudomonas aeruginosa, all species that encounter the mammalian immune system inhibit neutrophil elastase strongly while ecotin from the plant pathogen Pantoea citrea inhibits neutrophil elastase 1000-fold less than the others []. They all potently inhibit pancreatic digestive peptidases trypsin and chymotrypsin, while showing more variable inhibition of the blood peptidases Factor Xa, thrombin, and urokinase-type plasminogen activator. This entry represents the structural domain of ecotin, consisting of 8 beta strands organised in 2 sheets.; PDB: 1P0S_E 1IFG_A 1FI8_E 1EZU_A 1N8O_E 1ECZ_A 1AZZ_C 1XX9_C 1SLW_A 1SLX_A ....
Probab=34.84 E-value=13 Score=31.80 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=27.4
Q ss_pred cCCeEEcCCCCCCCccccCCCCCCCCc-cEEEEeecCceeEEEEEcccCCCC
Q psy15181 115 LGTLIKLTDADPLNVFLGGLETNGSDG-KYTYSWQDEVMQVIFHVATMMPTL 165 (289)
Q Consensus 115 LG~~V~Lk~~~~~~gy~GGLD~~~~dG-~~t~y~~d~~~EI~FHVaTlMP~~ 165 (289)
.|..+.+ ||+ +.++.|.|+.....| -|.||.=+...+.+ +|||.+.
T Consensus 36 ~Gk~~~v-DCN-~~~l~G~le~k~l~GwGy~YY~v~~~~~~~---sTlMaC~ 82 (128)
T PF03974_consen 36 IGKTMEV-DCN-RYFLGGKLEEKTLQGWGYPYYVVDSIGEPA---STLMACP 82 (128)
T ss_dssp EEEEEEE--SS-BEEEEEEEEEEE-TTTS-EEEEEEEEEEEE---EE--B-S
T ss_pred cCcEEEE-eec-cceEccEEEEeeeCCCCceEEEEecCCCcc---eeeEecC
Confidence 4666666 575 557778888755556 48888766666555 9999975
No 9
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=27.16 E-value=51 Score=23.37 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.4
Q ss_pred CHHHhhhCCCCChhHHHHHHhc
Q psy15181 94 SEQEILRNQYGSIRYMDFLQRL 115 (289)
Q Consensus 94 ~E~eILsN~~gS~~y~~FL~~L 115 (289)
=|.+|.+-+...+.|..|++.|
T Consensus 24 CE~~iv~~~~~d~~Y~~y~~~l 45 (46)
T PF10764_consen 24 CEKEIVNTETDDPKYEFYKKQL 45 (46)
T ss_pred HHHHhccCCCCCCCHHHHHHhc
Confidence 4788998889999999999876
No 10
>PF06145 Corona_NS1: Coronavirus nonstructural protein NS1; InterPro: IPR009314 One of the members of this family is a 4.9 kDa proteins, encoded by Bovine coronavirus NS1 [].
Probab=26.37 E-value=51 Score=21.21 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=13.3
Q ss_pred cccccccCCCcccceeeeEEEEEee
Q psy15181 196 IRTVKVRLCPVDYNIRTVKVRLCPV 220 (289)
Q Consensus 196 ~~tI~sq~~p~~Fn~v~~~IVI~P~ 220 (289)
|+.|.-- |||| ..||.|.
T Consensus 12 pddilhp-----~nhv--~liir~i 29 (29)
T PF06145_consen 12 PDDILHP-----FNHV--NLIIRPI 29 (29)
T ss_pred cccccCc-----ccce--eEEEecC
Confidence 4455555 8999 9999884
Done!