Query psy15181
Match_columns 289
No_of_seqs 199 out of 435
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:36:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1srq_A RAP1GAP, GTPase-activat 100.0 7.6E-55 2.6E-59 415.0 21.2 210 49-271 90-329 (341)
2 2y6t_E Ecotin, chymotrypsinoge 64.1 2 6.8E-05 36.5 0.9 45 115-164 47-92 (148)
3 1slu_A Ecotin; serine protease 61.6 1.9 6.6E-05 36.3 0.3 45 115-164 42-87 (142)
4 1jss_A Stard4, cholesterol-reg 12.7 3.6E+02 0.012 22.5 5.9 83 149-238 109-201 (224)
5 2ol5_A PAI 2 protein; structur 12.1 2.8E+02 0.0094 23.4 4.9 59 147-218 44-103 (202)
6 2cu1_A Mitogen-activated prote 11.7 2.4E+02 0.0081 22.4 4.0 30 53-82 52-82 (103)
7 2pso_A STAR-related lipid tran 10.3 5.4E+02 0.018 21.9 6.3 55 214-280 177-236 (237)
8 1em2_A MLN64 protein; beta bar 7.9 8.8E+02 0.03 19.9 7.3 82 149-238 109-203 (229)
9 2jrh_A Mitogen-activated prote 7.9 3.7E+02 0.013 20.9 3.7 33 53-85 48-81 (94)
10 3b71_D T-cell surface glycopro 7.8 1.5E+02 0.0051 17.9 1.1 12 255-266 1-12 (26)
No 1
>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A*
Probab=100.00 E-value=7.6e-55 Score=414.98 Aligned_cols=210 Identities=24% Similarity=0.337 Sum_probs=174.9
Q ss_pred CCCCCCcceecCchHHHHHHHhhcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCCChhHHHHHHhcCCeEEcCCCCCCC
Q psy15181 49 FGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLN 128 (289)
Q Consensus 49 ~~~~~~~pi~lp~~~~~r~L~~LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~gS~~y~~FL~~LG~~V~Lk~~~~~~ 128 (289)
......+|+++|+. .++|..||+++.+++||||||||++||+ +|+|||+|++||++|.+||++|||+|+|+| |+
T Consensus 90 ~~~~~~~pi~~p~~--~~~L~~lD~~~~~~~~K~GViYv~~GQ~-~e~eIl~N~~gS~~f~eFL~~LG~~V~Lk~---~~ 163 (341)
T 1srq_A 90 VNVDRFYPVLYPKA--SRLIVTFDEHVISNNFKFGVIYQKLGQT-SEEELFSTNEESPAFVEFLEFLGQKVKLQD---FK 163 (341)
T ss_dssp CCCSCCEECCCTTH--HHHHHHHHHTTSCCEEEEEEEEECSSCC-SHHHHHCCCSCCHHHHHHHHHHSEEEESTT---CC
T ss_pred hcccccccccCccH--HHHHHHHhccCCcCceEEEEEEECCCCC-CHHHHhcCCCCCHHHHHHHHHhCCcEEeCC---CC
Confidence 34456789999986 6999999999999999999999999998 799999999999999999999999999998 47
Q ss_pred ccccCCCC-CCCCccEEEEeecCceeEEEEEcccCCCCCCCcchhhhhcccCCCeEEEEEeCCCCccccccccccCCCcc
Q psy15181 129 VFLGGLET-NGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVD 207 (289)
Q Consensus 129 gy~GGLD~-~~~dG~~t~y~~d~~~EI~FHVaTlMP~~~~D~q~~~KKRHIGND~V~IVfnEs~~~y~~~tI~sq~~p~~ 207 (289)
||+||||+ ++.+|.+++||++...|||||||||||+.++|+||++||||||||+|+|||+|++.+|+|++|+||
T Consensus 164 gy~GGLD~~~~~tG~~s~Y~~~~~~EImFHVsTlmP~~~~D~qq~~kKRHIGND~V~IVf~E~~~~f~p~~I~S~----- 238 (341)
T 1srq_A 164 GFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASN----- 238 (341)
T ss_dssp SCCTTCCSSSCTTCSEEEEEECSSCEEEEEEGGGSCCCTTCTTCHHHHHHHTTCSEEEEEESSCCCCCGGGSCCS-----
T ss_pred CCCcCCCccCCCCCCEEEEEEeCCeEEEEEecCCCCCCcCchhhhhhccccCCCEEEEEEeCCCCCcCCcccccc-----
Confidence 99999998 468999999988888999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeEEEEEeec----CC--eEEEEEecC----CC----cccccch-----------hhhccchhh--hhcCc--hhh
Q psy15181 208 YNIRTVKVRLCPVD----YN--IRTVKVRLA----GC----PCFVTDK-----------IDHNSKSVW--IHQNP--FSY 258 (289)
Q Consensus 208 Fn~v~~~IVI~P~~----~~--~v~V~~r~~----g~----~~ivs~~-----------l~a~~as~~--~~~~~--~~R 258 (289)
|||| +|||+|.. +. +|.|.++++ |. +.+++.. |+|+.|+.- ..+.. ..|
T Consensus 239 Fn~v--~IVV~p~~~~~~~~~yrV~v~~k~~vp~fgP~lp~~~v~~k~~~~~~fll~klINae~a~~~s~~f~~~~~RtR 316 (341)
T 1srq_A 239 FLHA--YVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTR 316 (341)
T ss_dssp SCCE--EEEEEEECC----CEEEEEEEECTTSCCCSSCCCTTCEEESSHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred CceE--EEEEEeCCCCCCCceEEEEEEecCCCCCCCCCCCCCceecCcHHHHHHHHHHHHHHHHHhhcCccccchHHHHH
Confidence 9999 99999864 33 677777776 21 3444533 455554431 00111 245
Q ss_pred HHHHhhhhhhhhh
Q psy15181 259 LEHIKNLPTKLQL 271 (289)
Q Consensus 259 lr~ik~lr~r~~~ 271 (289)
...|+.|-+++..
T Consensus 317 ~~ll~~i~~~~~~ 329 (341)
T 1srq_A 317 AALLETLYEELHI 329 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777777663
No 2
>2y6t_E Ecotin, chymotrypsinogen A; hydrolase-inhibitor complex; 2.74A {Yersinia pseudotuberculosis}
Probab=64.13 E-value=2 Score=36.47 Aligned_cols=45 Identities=29% Similarity=0.468 Sum_probs=32.6
Q ss_pred cCCeEEcCCCCCCCccccCCCCCCCCcc-EEEEeecCceeEEEEEcccCCC
Q psy15181 115 LGTLIKLTDADPLNVFLGGLETNGSDGK-YTYSWQDEVMQVIFHVATMMPT 164 (289)
Q Consensus 115 LG~~V~Lk~~~~~~gy~GGLD~~~~dG~-~t~y~~d~~~EI~FHVaTlMP~ 164 (289)
+|..+.+ ||+.| .+.|.|+.....|- |.||.=+...+. .+|||.+
T Consensus 47 ~Gk~~~v-DCN~~-~lgG~Leektl~GWGY~YY~v~~~~~~---~sTlMaC 92 (148)
T 2y6t_E 47 IGKTLNV-DCNRH-MLGGNLETRTLSGWGFDYLVMDKISQP---ASTMMAC 92 (148)
T ss_dssp EEEEEEE-CSSCE-EEECCEEEEECTTTCCEEEEECCCCCC---EEECCCC
T ss_pred cCcEEEE-ccCCc-eeccEEEEEeecCCCceEEEEecCCCc---cceeecC
Confidence 3666666 57644 66666887666774 888887777775 8999998
No 3
>1slu_A Ecotin; serine protease, inhibitor, complex, metal binding sites, PR engineering, protease-substrate interactions; 1.80A {Escherichia coli} SCOP: b.16.1.1 PDB: 1slv_A 1slw_A 1slx_A 1n8o_E 1azz_C* 1ecz_A* 1ecy_A 1xx9_C* 1p0s_E* 1id5_I* 1ezu_A 1xxf_C 1ezs_A 1xxd_C 1ifg_A 1fi8_C 1fi8_D
Probab=61.56 E-value=1.9 Score=36.28 Aligned_cols=45 Identities=31% Similarity=0.452 Sum_probs=31.2
Q ss_pred cCCeEEcCCCCCCCccccCCCCCCCCc-cEEEEeecCceeEEEEEcccCCC
Q psy15181 115 LGTLIKLTDADPLNVFLGGLETNGSDG-KYTYSWQDEVMQVIFHVATMMPT 164 (289)
Q Consensus 115 LG~~V~Lk~~~~~~gy~GGLD~~~~dG-~~t~y~~d~~~EI~FHVaTlMP~ 164 (289)
.|..+.+ ||+.| .+.|.|+.....| -|.||.=+...+. .+|||.+
T Consensus 42 ~Gk~~~v-DCN~~-~l~G~Leektl~GwGy~YY~~~~~~~~---~sTlMaC 87 (142)
T 1slu_A 42 IGQTLEV-DCNLH-RLGGKLENKTLEGWGYDYYVFDKVSSP---VSTMMHC 87 (142)
T ss_dssp EEEEEEE-CSSCE-EBCCEEEEEEETTTTEEEEEEECCCCC---EEECCCC
T ss_pred cccEEEE-ccCcc-eeccEEEEeeecCCCceEEEEecCCCc---cceeecC
Confidence 3666666 57644 5656688755556 4888877776675 8999998
No 4
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=12.72 E-value=3.6e+02 Score=22.53 Aligned_cols=83 Identities=10% Similarity=-0.087 Sum_probs=42.6
Q ss_pred cCceeEEEEEcccC--C-CCCCCcchhhhhcccCCCeEEEEEeCCCCccccccccccCCCcccceeeeEEEEEeecCC--
Q psy15181 149 DEVMQVIFHVATMM--P-TLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYN-- 223 (289)
Q Consensus 149 d~~~EI~FHVaTlM--P-~~~~D~q~~~KKRHIGND~V~IVfnEs~~~y~~~tI~sq~~p~~Fn~v~~~IVI~P~~~~-- 223 (289)
++.++|++++...+ | -.+.|-=.....+..++.+|.+-..-.-.++.++.++.. -... ..+|+|+..+
T Consensus 109 d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~~~g~VR~~-----~~~~--g~~i~p~~~~~~ 181 (224)
T 1jss_A 109 EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSETRPEFVRGY-----NHPC--GWFCVPLKDSPS 181 (224)
T ss_dssp STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCCCTTSEECE-----ECSE--EEEEEEETTEEE
T ss_pred CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCCCCCCEEEE-----eccc--EEEEEEcCCCCC
Confidence 34456666665433 2 345554344445566666544322222233566777776 3334 6789998653
Q ss_pred --eEEEEE--ecCCC-cccc
Q psy15181 224 --IRTVKV--RLAGC-PCFV 238 (289)
Q Consensus 224 --~v~V~~--r~~g~-~~iv 238 (289)
+++..+ ..+|. |.-+
T Consensus 182 ~t~vt~~~~~Dp~G~iP~~l 201 (224)
T 1jss_A 182 QSLLTGYIQTDLRGMIPQSA 201 (224)
T ss_dssp EEEEEEEECEECCSCCCHHH
T ss_pred ceEEEEEEEeCCCCCccHHH
Confidence 444444 34463 5433
No 5
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus}
Probab=12.05 E-value=2.8e+02 Score=23.39 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=35.2
Q ss_pred eecCceeEEEEEcccCCCCCCCcchhhhhcccCCCeEEEEEeCCCCccccccccc-cCCCcccceeeeEEEEE
Q psy15181 147 WQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKV-RLCPVDYNIRTVKVRLC 218 (289)
Q Consensus 147 ~~d~~~EI~FHVaTlMP~~~~D~q~~~KKRHIGND~V~IVfnEs~~~y~~~tI~s-q~~p~~Fn~v~~~IVI~ 218 (289)
|.++..-+.||.|.- ..|.+.|.++.|+++|.....-..|+...+ .--|| .|+. .++++
T Consensus 44 ~~~~~~~Ly~H~A~~----------n~k~~~l~~~~V~~~~~g~~~yisps~y~~~~~vpT-~nY~--SV~~~ 103 (202)
T 2ol5_A 44 LDREKTCLYGHFARS----------NPQWNDIQHQTVLAIFHGPHCYISPSWYETNQAVPT-WNYV--AVHVY 103 (202)
T ss_dssp ECTTSSEEEEEEETT----------SGGGGGCTTSCEEEEEEEEEEEECGGGSSCSCCCCE-EEEE--EEEEE
T ss_pred EECCCCEEEEEECCc----------ChHHHhhCCCCEEEEEEcCCEEechhhcccCCCCCC-cceE--EEEEE
Confidence 433323688999832 236677766889999987654333555432 12456 6777 55543
No 6
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=11.67 E-value=2.4e+02 Score=22.41 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCcceecCchH-HHHHHHhhcCCCCCccceE
Q psy15181 53 NEKPILVSNEQ-GKRAISNLDWIPPYETHKV 82 (289)
Q Consensus 53 ~~~pi~lp~~~-~~r~L~~LD~~~~~e~hKi 82 (289)
.+--|+|-+.+ +.+|+..||+.+.-...||
T Consensus 52 ~EllIpl~sQeDLDkaIellDrss~~kSLrI 82 (103)
T 2cu1_A 52 NELVIPLTTQDDLDKAVELLDRSIHMKSLKI 82 (103)
T ss_dssp SSSCEECCSHHHHHHHHHHHHHCSSCCSEEE
T ss_pred ceEEEeccCHHHHHHHHHHHccCCcccceEE
Confidence 34455665666 9999999999998888899
No 7
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=10.30 E-value=5.4e+02 Score=21.94 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=24.9
Q ss_pred EEEEEeecCC--eEEEEEecC--CC-cccccchhhhccchhhhhcCchhhHHHHhhhhhhhhhhcccCchhh
Q psy15181 214 KVRLCPVDYN--IRTVKVRLA--GC-PCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDK 280 (289)
Q Consensus 214 ~IVI~P~~~~--~v~V~~r~~--g~-~~ivs~~l~a~~as~~~~~~~~~Rlr~ik~lr~r~~~~~~~~~~~~ 280 (289)
..+|.|+..+ +++....-| |. |..+ .+.. ... =...+++||+.+..-...|-|-|
T Consensus 177 g~~i~P~~~~~t~vt~~~~~Dp~G~iP~~l-n~~~---~~~--------~~~~l~~LR~~~~~~~~~~~~~~ 236 (237)
T 2pso_A 177 QYLIEPCGSGKSRLTHICRIDLKGHSPEWY-SKGF---GHL--------CAAEVARIRNSFQPLIAEGPETK 236 (237)
T ss_dssp EEEEEECSTTCEEEEEEEEECCSSSCTTTT-TTHH---HHH--------HHHHHHHHHHTTSCC--------
T ss_pred EEEEEECCCCCEEEEEEEEeCCCCCchHHH-HHHH---HHH--------HHHHHHHHHHHHHhhcCCCCccC
Confidence 5678999766 455444444 63 5444 3221 111 12456677777655555554544
No 8
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=7.94 E-value=8.8e+02 Score=19.91 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=38.5
Q ss_pred cCceeEEEEEc--c-cCCCCCCCcchhhhhcccCCCeEEEEEeCCCC---ccccccccccCCCcccceeeeEEEEEeecC
Q psy15181 149 DEVMQVIFHVA--T-MMPTLESDPNCNNKKKNIGNDYVTIVYNESGV---DYNIRTVKVRLCPVDYNIRTVKVRLCPVDY 222 (289)
Q Consensus 149 d~~~EI~FHVa--T-lMP~~~~D~q~~~KKRHIGND~V~IVfnEs~~---~y~~~tI~sq~~p~~Fn~v~~~IVI~P~~~ 222 (289)
+..++|.+.+. . +.|..+.|-=.....+..++.+| |+...-.. |-.++.++.. .... -.+|+|+..
T Consensus 109 ~~~t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~v-i~~~Sv~~~~~P~~~~~VR~~-----~~~~--g~~i~p~~~ 180 (229)
T 1em2_A 109 EDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYL-SSGIATSHSAKPPTHKYVRGE-----NGPG--GMIVLKSAS 180 (229)
T ss_dssp TTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEEE-EEEEECCCTTSCCCTTSEECE-----ECSE--EEEEEECSS
T ss_pred CCCeEEEEEEecCcCCCCcCCCeeEEEEEEEEcCCEEE-EEEecccCCCCCCCCCCEeee-----eccc--EEEEEecCC
Confidence 33455544443 2 23455555433344455555543 33322222 3344556666 3334 678899863
Q ss_pred --C--eEEE--EEecCCC-cccc
Q psy15181 223 --N--IRTV--KVRLAGC-PCFV 238 (289)
Q Consensus 223 --~--~v~V--~~r~~g~-~~iv 238 (289)
+ +++. ++..+|. |.-+
T Consensus 181 ~~~~t~vt~~~~~Dp~G~iP~~l 203 (229)
T 1em2_A 181 NPRVCTFVWILNTDLKGRLPRYL 203 (229)
T ss_dssp CTTCEEEEEEECEECCSSSCHHH
T ss_pred CCCcEEEEEEEEECCCCCCCHHH
Confidence 3 4443 3444463 5433
No 9
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=7.92 E-value=3.7e+02 Score=20.92 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=24.7
Q ss_pred CCcceecCchH-HHHHHHhhcCCCCCccceEEEE
Q psy15181 53 NEKPILVSNEQ-GKRAISNLDWIPPYETHKVGVL 85 (289)
Q Consensus 53 ~~~pi~lp~~~-~~r~L~~LD~~~~~e~hKiGVi 85 (289)
++--|++-+.. +++|+..||+.+.-..-||=+.
T Consensus 48 nEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 48 NELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp SSCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred ceeEEeccCHHHHHHHHHHhccCccccceEEEEE
Confidence 44556666666 9999999999998777766544
No 10
>3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, ATP-binding, CEL junction, kinase, nucleotide-binding, phosphorylation; 2.82A {Homo sapiens}
Probab=7.84 E-value=1.5e+02 Score=17.92 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=8.9
Q ss_pred chhhHHHHhhhh
Q psy15181 255 PFSYLEHIKNLP 266 (289)
Q Consensus 255 ~~~Rlr~ik~lr 266 (289)
+++|..|||+|-
T Consensus 1 rA~R~sqikrlL 12 (26)
T 3b71_D 1 QAERMSQIKRLL 12 (26)
T ss_pred ChhHHHHHHHHH
Confidence 357888998853
Done!