RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15181
         (289 letters)



>gnl|CDD|216901 pfam02145, Rap_GAP, Rap/ran-GAP. 
          Length = 187

 Score =  130 bits (328), Expect = 4e-37
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 4/104 (3%)

Query: 98  ILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLET-NGSDGKYTYSWQDEVMQVIF 156
           IL N  GS  + DFL  LG  ++L        + GGL+T N S G+Y+  W+D   +++F
Sbjct: 1   ILSNNEGSPAFDDFLSSLGDKVRLKGH---KGYRGGLDTKNDSTGEYSIYWRDRDTEIMF 57

Query: 157 HVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVK 200
           HV+TMMPT ++DP    KK++IGND V I++NESG+ +N  T+K
Sbjct: 58  HVSTMMPTNDNDPQQLEKKRHIGNDIVNIIFNESGLPFNPNTIK 101


>gnl|CDD|109652 pfam00604, Flu_PB2, Influenza RNA-dependent RNA polymerase subunit
           PB2.  PB2 can bind 5' end cap structure of RNA.
          Length = 759

 Score = 27.9 bits (62), Expect = 7.2
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 16  ESVKRSMGRNSREPVR---YGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAI 68
           +   +SM    R+ VR      NP +  + + HS Q GGT    IL+ N+  ++A+
Sbjct: 253 DDRDQSMIIACRKIVRRATVSINPLSSLVEMCHSTQIGGTRLVDILLQNDTEEQAV 308


>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase.
          Length = 374

 Score = 27.4 bits (61), Expect = 8.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 8   KHFHKLDLESVKRSMGRNSREPVRYGS----NPSAVF 40
           + F +L LE   + M  + R PVRYG+    N  AVF
Sbjct: 117 RRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVF 153


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0787    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,359,551
Number of extensions: 1330584
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 6
Length of query: 289
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 193
Effective length of database: 6,679,618
Effective search space: 1289166274
Effective search space used: 1289166274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)