RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15181
         (289 letters)



>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling
           protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB:
           3brw_A*
          Length = 341

 Score =  142 bits (359), Expect = 2e-40
 Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 9/205 (4%)

Query: 34  SNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGN 93
             P+ V ++             P+L    +  R I   D        K GV+Y   GQ  
Sbjct: 75  EFPNVVQMAKLVCEDVNVDRFYPVL--YPKASRLIVTFDEHVISNNFKFGVIYQKLGQ-T 131

Query: 94  SEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLET-NGSDGKYTYSWQDEVM 152
           SE+E+      S  +++FL+ LG  +KL D      F GGL+  +G  G  +        
Sbjct: 132 SEEELFSTNEESPAFVEFLEFLGQKVKLQDFK---GFRGGLDVTHGQTGTESVYCNFRNK 188

Query: 153 QVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRT 212
           +++FHV+T +P  E D     +K++IGND V +V+ +    +    +          ++ 
Sbjct: 189 EIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQA 248

Query: 213 VKVRLCPVDYNIRTVKVRLAGCPCF 237
                    Y +          P F
Sbjct: 249 EGGGPDGPLYKVSV--TARDDVPFF 271


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 36/164 (21%), Positives = 54/164 (32%), Gaps = 52/164 (31%)

Query: 15  LESVKRSMG--RNSREPVRYGSNPSAVFLSL--FHSPQFGGTNEKPI--LVSN---EQGK 65
            E V + +G   +  EP + G     + L L  F +  +   N+  I  L +    E   
Sbjct: 58  AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-CYLEGND--IHALAAKLLQENDT 114

Query: 66  RAISNLDWIPPY-----------------------ETHKVGVLYV--GPGQGNSE---QE 97
             +   + I  Y                              L    G GQGN++   +E
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFG-GQGNTDDYFEE 172

Query: 98  ILRNQYGSIRYMDFLQRL-----GTLIKL--TDADPLNVFLGGL 134
            LR+ Y +  Y   +  L      TL +L  T  D   VF  GL
Sbjct: 173 -LRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213



 Score = 30.4 bits (68), Expect = 0.96
 Identities = 41/263 (15%), Positives = 70/263 (26%), Gaps = 118/263 (44%)

Query: 13  LDLESVKRSMGR-NSREPVRYGSNPSAVFLSLFHSP-QF--GGTNEKPI----LVSNEQG 64
           L  E V+  + + NS  P         V +SL +        G    P     L    + 
Sbjct: 344 LTQEQVQDYVNKTNSHLPAG-----KQVEISLVNGAKNLVVSGP---PQSLYGLNLTLRK 395

Query: 65  KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDA 124
            +A S LD        ++      P                     F +R     KL   
Sbjct: 396 AKAPSGLD------QSRI------P---------------------FSER-----KLK-- 415

Query: 125 DPLNVFLGGLETNGSDGKYTYSWQDEVMQVI---FHVATMMPTLESDPNCNNKKKNIGND 181
              N FL                       +   FH   ++P  +           I  D
Sbjct: 416 -FSNRFL----------------------PVASPFHSHLLVPASDL----------INKD 442

Query: 182 YVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAG--CPCFVT 239
            V     ++ V +N + +++   PV Y+             ++R +   ++     C + 
Sbjct: 443 LV-----KNNVSFNAKDIQI---PV-YDTFDGS--------DLRVLSGSISERIVDCIIR 485

Query: 240 DKIDHNSKSVWIHQNPFSYLEHI 262
             +       W     F    HI
Sbjct: 486 LPVK------WETTTQFKAT-HI 501


>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
           dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
           vinifera} PDB: 3hfs_A
          Length = 338

 Score = 30.3 bits (69), Expect = 0.76
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 104 GSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQ---VIFHVAT 160
            ++R  D  +++  L++L +   L +F   L    S       + +  +     +FHVAT
Sbjct: 38  TTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELS-------F-EAPIAGCDFVFHVAT 89

Query: 161 MMPTLESDP 169
            +     DP
Sbjct: 90  PVHFASEDP 98


>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta,
           structural genomics, PSI, protein structure initiative;
           NMR {Shewanella oneidensis} SCOP: d.310.1.1
          Length = 195

 Score = 28.3 bits (63), Expect = 2.6
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 10  FHKLDLESVKRSMGRNSREPVRYGS--NPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRA 67
             ++DL + + S        V  G   +    F+     P +  + E    +     +  
Sbjct: 52  LEQMDLPTEQVSADLAMGSQVLMGGPVSQDRGFVLHTSQPYWANSTELGSGLMLTTSRDV 111

Query: 68  ISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRN 101
           ++ +      +   V + Y G  +   EQE+  N
Sbjct: 112 LTAIGSKRSPDKFLVALGYAGWSKNQLEQELADN 145


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 27.3 bits (60), Expect = 4.3
 Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 9/35 (25%)

Query: 169 PNCNNKKKNIGNDYVT---------IVYNESGVDY 194
           P C      I   +           +V ++  VD 
Sbjct: 25  PECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDT 59


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,376,048
Number of extensions: 253596
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 8
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)