RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15181
         (289 letters)



>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score =  163 bits (414), Expect = 5e-49
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 5/178 (2%)

Query: 52  TNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDF 111
             ++   V   +  R I   D        K GV+Y   GQ + E+E+      S  +++F
Sbjct: 88  NVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTS-EEELFSTNEESPAFVEF 146

Query: 112 LQRLGTLIKLTDADPLNVFLGGLET-NGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPN 170
           L+ LG  +KL D      F GGL+  +G  G  +        +++FHV+T +P  E D  
Sbjct: 147 LEFLGQKVKLQDFKG---FRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQ 203

Query: 171 CNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVK 228
              +K++IGND V +V+ +    +    +          ++          Y +    
Sbjct: 204 QLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTA 261


>d1sz8a_ a.133.1.2 (A:) Snake phospholipase A2 {Andaman cobra (Naja
           sagittifera), acidic isoform 1 [TaxId: 195058]}
          Length = 119

 Score = 24.9 bits (54), Expect = 6.4
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 18/70 (25%)

Query: 233 GCPC------FVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSS---------CLGS 277
           GC C         D +D   +    H N ++  E+I       +  S         C G 
Sbjct: 25  GCYCGKGGSGTPVDDLDRCCQV---HDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGD 81

Query: 278 EDKVKRSLCE 287
            +    S+C+
Sbjct: 82  NNACAASVCD 91


>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId:
           1423]}
          Length = 399

 Score = 25.5 bits (55), Expect = 8.2
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 210 IRTVKVRLCPVDYNIRTVKVRLAGCPCFVTDKID-HNSKSVWIHQNPFSYLEH 261
           IR ++ +     +         +G      D I  +    +WI    F+    
Sbjct: 154 IRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSR 206


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,093,864
Number of extensions: 51147
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 6
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)