BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15182
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
          Length = 654

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 266 NEGVYVNTYG------KVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLD 319
           N G Y+N +        +S NIL  W   P          + GWG++       ++GH D
Sbjct: 461 NYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHR-------DSGHHD 513

Query: 320 GVFMHKKSQ 328
             + H  S 
Sbjct: 514 EAWAHNSSN 522


>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
           Competitive Antagonist Zk 200775
 pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
           Competitive Antagonist Zk 200775
 pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
           Competitive Antagonist Zk 200775
 pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
           Competitive Antagonist Zk 200775
          Length = 823

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 195 GYRPLLVDLTVEEGTRLKVIYGSAD--GFHAVDLDSAMV 231
           GY  ++ +L   +G  LK+ +G A+  GF  VD D ++V
Sbjct: 208 GYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLV 246


>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
           Domain (Ntd)
 pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
           Domain (Ntd)
          Length = 376

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 195 GYRPLLVDLTVEEGTRLKVIYGSAD--GFHAVDLDSAMV 231
           GY  ++ +L   +G  LK+ +G A+  GF  VD D ++V
Sbjct: 208 GYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLV 246


>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
 pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
 pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
 pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
 pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
 pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
          Length = 374

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 195 GYRPLLVDLTVEEGTRLKVIYGSAD--GFHAVDLDSAMV 231
           GY  ++ +L   +G  LK+ +G A+  GF  VD D ++V
Sbjct: 206 GYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLV 244


>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
 pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
          Length = 388

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 195 GYRPLLVDLTVEEGTRLKVIYGSAD--GFHAVDLDSAMV 231
           GY  ++ +L   +G  LK+ +G A+  GF  VD D ++V
Sbjct: 211 GYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLV 249


>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
           Receptor Glur2 Atd Region At 1.8 A Resolution
 pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
           Receptor Glur2 Atd Region At 4.1 A Resolution
 pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
           Receptor Glur2 Atd Region At 4.1 A Resolution
 pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
           Receptor Glur2 Atd Region At 4.1 A Resolution
          Length = 388

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 195 GYRPLLVDLTVEEGTRLKVIYGSAD--GFHAVDLDSAMV 231
           GY  ++ +L   +G  LK+ +G A+  GF  VD D ++V
Sbjct: 208 GYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLV 246


>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
 pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
 pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
 pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
           Without Solvent
 pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
           Without Solvent
          Length = 394

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 195 GYRPLLVDLTVEEGTRLKVIYGSAD--GFHAVDLDSAMV 231
           GY  ++ +L   +G  LK+ +G A+  GF  VD D ++V
Sbjct: 216 GYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLV 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,012,273
Number of Sequences: 62578
Number of extensions: 466430
Number of successful extensions: 884
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 9
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)