Query psy15182
Match_columns 366
No_of_seqs 143 out of 308
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:37:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0587|consensus 100.0 1.4E-60 3E-65 496.5 -3.3 343 21-366 611-953 (953)
2 smart00036 CNH Domain found in 100.0 5.8E-55 1.3E-59 423.4 31.2 286 52-345 5-301 (302)
3 PF00780 CNH: CNH domain; Int 100.0 2.2E-46 4.8E-51 355.3 31.4 265 57-337 1-275 (275)
4 COG5422 ROM1 RhoGEF, Guanine n 100.0 5.8E-38 1.3E-42 324.2 19.5 273 53-350 857-1164(1175)
5 KOG4305|consensus 100.0 3.4E-28 7.4E-33 260.2 14.5 272 54-350 709-1018(1029)
6 KOG0576|consensus 99.9 2E-28 4.3E-33 250.4 7.9 301 46-358 481-824 (829)
7 KOG2063|consensus 99.9 6.5E-25 1.4E-29 234.2 16.1 282 42-358 4-306 (877)
8 KOG0976|consensus 99.2 3E-12 6.6E-17 133.1 -0.9 247 54-316 845-1110(1265)
9 KOG0976|consensus 98.9 8.9E-10 1.9E-14 115.1 5.5 245 53-316 946-1195(1265)
10 KOG0612|consensus 97.8 5.2E-08 1.1E-12 106.4 -15.2 218 55-325 1056-1288(1317)
11 cd00200 WD40 WD40 domain, foun 92.2 7.8 0.00017 34.2 31.5 239 53-323 9-258 (289)
12 KOG1274|consensus 91.2 2.8 6.1E-05 46.1 12.4 126 43-176 86-216 (933)
13 KOG0294|consensus 90.1 21 0.00045 35.3 18.7 109 54-179 84-198 (362)
14 KOG1273|consensus 87.9 30 0.00065 34.3 22.7 234 56-324 26-290 (405)
15 KOG1273|consensus 86.3 6.6 0.00014 38.8 10.0 125 48-179 144-279 (405)
16 KOG2106|consensus 86.0 36 0.00078 35.7 15.5 74 47-123 401-478 (626)
17 KOG0264|consensus 83.7 11 0.00023 38.5 10.5 80 47-126 266-351 (422)
18 KOG0294|consensus 79.6 8.9 0.00019 37.8 8.0 70 53-123 208-282 (362)
19 KOG2445|consensus 78.1 75 0.0016 31.4 18.8 185 87-276 107-308 (361)
20 KOG0292|consensus 76.1 1.4E+02 0.0031 33.7 20.3 82 257-343 415-505 (1202)
21 KOG1446|consensus 75.9 84 0.0018 30.9 26.2 94 161-265 152-251 (311)
22 KOG0302|consensus 75.7 22 0.00048 35.9 9.7 75 48-123 297-379 (440)
23 KOG0283|consensus 72.6 43 0.00093 36.6 11.6 107 55-179 452-575 (712)
24 TIGR03866 PQQ_ABC_repeats PQQ- 69.0 92 0.002 28.4 31.8 223 72-324 11-247 (300)
25 KOG0306|consensus 63.0 1.3E+02 0.0029 33.2 12.7 60 63-123 119-180 (888)
26 PF14783 BBS2_Mid: Ciliary BBS 60.5 98 0.0021 25.9 9.1 64 55-121 3-70 (111)
27 PF14727 PHTB1_N: PTHB1 N-term 58.8 57 0.0012 33.5 9.0 73 47-121 274-359 (418)
28 KOG2114|consensus 58.5 3.1E+02 0.0067 30.8 22.4 251 55-321 27-289 (933)
29 KOG0315|consensus 57.8 1.9E+02 0.004 28.1 17.3 71 52-123 123-198 (311)
30 cd00200 WD40 WD40 domain, foun 57.7 1.3E+02 0.0028 26.2 27.6 200 91-322 9-215 (289)
31 KOG2280|consensus 57.5 2.8E+02 0.0061 30.8 14.0 75 258-336 228-314 (829)
32 PF03178 CPSF_A: CPSF A subuni 56.8 1.5E+02 0.0032 28.6 11.4 89 53-142 129-222 (321)
33 PF02333 Phytase: Phytase; In 56.5 45 0.00098 33.9 7.7 158 56-227 54-237 (381)
34 KOG0646|consensus 56.3 2.5E+02 0.0055 29.2 14.6 75 51-127 79-158 (476)
35 PF14783 BBS2_Mid: Ciliary BBS 55.1 72 0.0016 26.7 7.5 35 277-311 71-111 (111)
36 KOG0291|consensus 54.5 3.4E+02 0.0074 30.1 26.9 68 53-121 265-337 (893)
37 TIGR03866 PQQ_ABC_repeats PQQ- 49.8 2E+02 0.0044 26.1 29.2 234 65-325 44-290 (300)
38 KOG2048|consensus 48.3 4E+02 0.0086 29.1 20.8 259 54-320 246-554 (691)
39 PF12894 Apc4_WD40: Anaphase-p 47.0 39 0.00085 23.6 4.0 30 49-79 7-39 (47)
40 PF00400 WD40: WD domain, G-be 46.7 71 0.0015 20.0 5.5 28 92-120 12-39 (39)
41 KOG1272|consensus 45.7 72 0.0016 33.2 7.2 72 54-126 254-327 (545)
42 KOG0305|consensus 43.9 4.1E+02 0.0089 28.0 19.3 69 57-125 220-291 (484)
43 KOG0319|consensus 39.1 3.2E+02 0.007 30.1 11.0 67 53-121 323-394 (775)
44 PF14779 BBS1: Ciliary BBSome 38.4 2E+02 0.0044 27.6 8.7 26 54-79 177-212 (257)
45 KOG2110|consensus 37.3 4.6E+02 0.01 26.6 14.3 112 202-331 9-130 (391)
46 PF11768 DUF3312: Protein of u 37.2 5.5E+02 0.012 27.5 13.0 66 54-121 260-328 (545)
47 COG3204 Uncharacterized protei 36.5 3.6E+02 0.0079 26.6 10.1 115 57-179 88-211 (316)
48 PF14779 BBS1: Ciliary BBSome 33.8 98 0.0021 29.7 5.8 37 150-187 69-105 (257)
49 PF12894 Apc4_WD40: Anaphase-p 33.4 1.2E+02 0.0026 21.1 4.8 30 93-123 13-42 (47)
50 PF08662 eIF2A: Eukaryotic tra 32.3 3.7E+02 0.008 24.1 18.3 52 71-122 38-91 (194)
51 KOG1034|consensus 32.3 71 0.0015 31.9 4.6 60 60-120 316-381 (385)
52 KOG0650|consensus 32.1 2.2E+02 0.0047 30.8 8.3 112 92-227 522-637 (733)
53 KOG0289|consensus 31.5 6.2E+02 0.013 26.4 15.9 122 54-192 348-473 (506)
54 KOG2315|consensus 31.4 6.7E+02 0.015 26.8 19.5 158 148-323 166-353 (566)
55 KOG0639|consensus 31.1 3.6E+02 0.0077 28.7 9.5 65 53-123 418-496 (705)
56 KOG2111|consensus 30.5 5.6E+02 0.012 25.6 21.0 103 60-181 11-124 (346)
57 PF07893 DUF1668: Protein of u 29.6 2.5E+02 0.0054 27.8 8.2 69 56-125 179-255 (342)
58 KOG1539|consensus 29.3 8.7E+02 0.019 27.4 17.2 251 93-354 336-603 (910)
59 KOG0640|consensus 29.1 92 0.002 31.0 4.7 63 54-120 217-289 (430)
60 KOG0291|consensus 27.2 9.2E+02 0.02 27.0 25.5 113 54-181 351-467 (893)
61 KOG0318|consensus 25.4 8.5E+02 0.018 26.0 24.9 108 202-321 368-480 (603)
62 KOG1445|consensus 24.2 9.2E+02 0.02 26.6 11.2 199 60-301 636-851 (1012)
63 KOG1963|consensus 24.2 5.5E+02 0.012 28.7 9.9 72 54-127 252-327 (792)
64 KOG0306|consensus 23.7 3E+02 0.0065 30.5 7.7 69 54-123 66-138 (888)
65 PF04053 Coatomer_WDAD: Coatom 23.6 2.5E+02 0.0055 29.0 7.1 64 54-120 107-171 (443)
66 KOG0646|consensus 23.6 4E+02 0.0086 27.8 8.2 73 51-124 215-309 (476)
67 KOG1539|consensus 22.7 1.1E+03 0.025 26.5 22.2 241 49-318 72-322 (910)
68 TIGR03067 Planc_TIGR03067 Plan 22.2 4.4E+02 0.0095 21.5 7.7 56 207-265 36-95 (107)
69 PF08596 Lgl_C: Lethal giant l 22.1 7.8E+02 0.017 25.0 10.3 94 66-175 158-287 (395)
70 PF01894 UPF0047: Uncharacteri 21.9 88 0.0019 26.3 2.8 20 63-82 89-108 (118)
71 PF07569 Hira: TUP1-like enhan 20.6 6E+02 0.013 23.4 8.4 68 53-122 12-95 (219)
72 PF14761 HPS3_N: Hermansky-Pud 20.6 4.7E+02 0.01 24.5 7.5 66 288-355 19-93 (215)
73 KOG4328|consensus 20.2 1E+03 0.022 25.0 12.0 63 64-127 292-358 (498)
No 1
>KOG0587|consensus
Probab=100.00 E-value=1.4e-60 Score=496.47 Aligned_cols=343 Identities=74% Similarity=1.293 Sum_probs=335.5
Q ss_pred ccceeeeeecccCCccCCCCCCceeeEeeecCCceeEEeEEecceEEEeecceeEEEEecCCCceEEeecCCceEEEEEe
Q psy15182 21 SRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVL 100 (366)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~k~f~~~I~Caa~wg~~LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vl 100 (366)
.++.++| || |+.+++++++|+++++.++|+++|.|+|.||.|+++||++|+.+++++++++++.++++|+++||+|+
T Consensus 611 ~~~~s~v-~n--~~~~ra~s~~~eirk~kk~~~se~~~aa~~g~n~~~~t~~gl~lld~s~q~k~~~~i~~rrfqq~~~l 687 (953)
T KOG0587|consen 611 TRKGSVV-VN--PTNTRAQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVL 687 (953)
T ss_pred cccccee-ec--CCCCcccccCHHHHHHHHhhhhhHHHHHhcCcceeecccccceeeccccCcccCCcccchhccccccc
Confidence 4677888 88 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEECCCCeEEEEEchhhhccccccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCC
Q psy15182 101 EGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPK 180 (366)
Q Consensus 101 e~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~ 180 (366)
|.+|+|.+++|+.+.+++|.|+||.++++..++.++|+.||++++++.||.+|.+++++..++|++|.+.++.+|.|+|+
T Consensus 688 e~~n~l~tis~~~~~~~~~y~s~~~~k~l~~d~e~ek~~~~~~~~~~~~~~~~~~~k~~~ik~l~is~~~s~evy~~apk 767 (953)
T KOG0587|consen 688 EGLNVLVTISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCIHYKVVKYERIKFLVIALKSSVEVYAWAPK 767 (953)
T ss_pred CCcceeEEEeccccccceecchHHhhhhhhcCchhhhhccchhhhhhhcchhhhHHHHHHHHHhheeccccceeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeeeecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceE
Q psy15182 181 PYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQL 260 (366)
Q Consensus 181 p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~ 260 (366)
|+|+||.+|.|.++++.|..+++++.++++++|.||+..||+.+|++++.+.+++.|++.+....|++++.+++..+.+.
T Consensus 768 ~~~k~~~~~s~~~~~~~~~~~d~~~ee~~~~~v~~gs~~~~~~~~~~~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~ 847 (953)
T KOG0587|consen 768 PYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSITPHAIIILPNTDGMEL 847 (953)
T ss_pred hHHHHHhhhhhhhhcccchhccchhhcCceEEEEecCcccccccccCCCCCCCCcCCcchhhcccceeEecCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred EEEEcceEEEEeCCCceeeeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEeccCCCceeEEEEeCCEE
Q psy15182 261 LLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKV 340 (366)
Q Consensus 261 LLcy~~~~vfVn~~G~~sr~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k~~~~lr~L~~~~d~v 340 (366)
|||||+.+++||..|+..++...+|...|++++|+++..++||.+++||+|+++++.+..+++||++++|+++|.++|++
T Consensus 848 l~~~~~e~~~~~~~~~~~k~v~~~~~~~~Ss~a~~~~~n~~g~~~ka~e~~s~e~~~~~g~~~~k~~~kls~~~~~~dK~ 927 (953)
T KOG0587|consen 848 LLCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQIMGWGEKAIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKV 927 (953)
T ss_pred hhhhhcccccccCccchHHHHHHhcCCCCCcceeeecccccccCcccceeeccccccccceeehhhHHhhhHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCeeEEEEEecCCCcCCCC
Q psy15182 341 FFSSAKGGGHCQIYFMTLNKPCMANW 366 (366)
Q Consensus 341 f~as~~~~~~~~v~~~~~~~~~~~~~ 366 (366)
||+++.++++|+|||||++|+.+.||
T Consensus 928 ~f~s~~~~~~~~~y~~tl~r~~~~~~ 953 (953)
T KOG0587|consen 928 FFASVRSGGSSQVYFMTLNRTSLLNW 953 (953)
T ss_pred HHHHHhcCCcceeeeeecCCcccccC
Confidence 99999999999999999999999998
No 2
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=100.00 E-value=5.8e-55 Score=423.43 Aligned_cols=286 Identities=33% Similarity=0.522 Sum_probs=234.9
Q ss_pred CCceeEEeEEecceEEEeecceeEEEEecCC-CceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcccc-
Q psy15182 52 FGSEILCAALWGVNLLIGTETGLMLLDRSGQ-GKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKIL- 129 (366)
Q Consensus 52 f~~~I~Caa~wg~~LllGTeeGlyll~~~~~-~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~- 129 (366)
+++.+.|++ .+||+|||+|+|+++++++ .++.+++++|+|+||+|+|++|+|++|+||.++||+|+|++|+.+..
T Consensus 5 ~~~~~~~~~---~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~ 81 (302)
T smart00036 5 WNHPITCDG---KWLLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEA 81 (302)
T ss_pred EccccccCC---cEEEEEeCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhc
Confidence 344555553 4699999999999998754 57899999999999999999999999999999999999999996421
Q ss_pred -ccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeee---cccCCCceEEEEee
Q psy15182 130 -KMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSF---GELGYRPLLVDLTV 205 (366)
Q Consensus 130 -~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef---~~lp~~p~~v~l~v 205 (366)
..++...++++++++++++||++|++.++....+||+|++++|.+|+| .+|+++|+.+|++ ..+++.|..+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~-~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~ 160 (302)
T smart00036 82 LGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQW-YNPLKKFKLFKSKFLFPLISPVPVFVELVS 160 (302)
T ss_pred cCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEc-cChhhhhhhhcccccccCCCCccceEeeec
Confidence 223445667788889999999999999888889999999999999999 4699999999984 33555565555444
Q ss_pred ecCCeEEEEEecCC-ceEEEECCC--CceEEeecCCCCCCCC-cceEEEEecCCCCceEEEEEcceEEEEeCCC-ceeee
Q psy15182 206 EEGTRLKVIYGSAD-GFHAVDLDS--AMVYDIYLPKHIQGPI-CPHCIVALPNSNGMQLLLCYDNEGVYVNTYG-KVSKN 280 (366)
Q Consensus 206 ~~~~~l~V~~g~~~-gF~~idl~~--~~~~~L~~p~~~~~~~-~p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G-~~sr~ 280 (366)
.+.++..||+|+.+ ||+++|+++ .+..+...+....... .|++|+++++ +|||||||++|+|||.+| ++++.
T Consensus 161 ~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~---~e~Llc~~~~~v~Vn~~G~~~~r~ 237 (302)
T smart00036 161 SSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPR---DEFLLCYDEFGVFVNLYGKRRSRN 237 (302)
T ss_pred ccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECC---CeEEEEECcEEEEEeCCCCccccc
Confidence 44444555556557 999999965 3333322221122222 7999999975 699999999999999999 78899
Q ss_pred eeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEeccCCCceeEEEEeCCEEEEEeC
Q psy15182 281 ILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSA 345 (366)
Q Consensus 281 ~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k~~~~lr~L~~~~d~vf~as~ 345 (366)
..++|++.|+++|| .+|||+||++++||||+++||+|+|+|++++.+++|||+++++.+|++|.
T Consensus 238 ~~l~w~~~p~~~~~-~~pyll~~~~~~ievr~l~~~~l~q~i~~~~~~~~r~L~~~~~~I~~~s~ 301 (302)
T smart00036 238 PILHWEFMPESFAY-HSPYLLAFHDNGIEIRSIKTGELLQELADRETRKIRLLGSSDRKILLSSS 301 (302)
T ss_pred eEEEcCCcccEEEE-ECCEEEEEcCCcEEEEECCCCceEEEEecCCCcceEEEecCCCeEEEEec
Confidence 99999999999999 69999999999999999999999999998889999999987788888883
No 3
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=100.00 E-value=2.2e-46 Score=355.28 Aligned_cols=265 Identities=29% Similarity=0.484 Sum_probs=225.4
Q ss_pred EEeEEecceEEEeecceeEEEEecCCCceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccccccCCcce
Q psy15182 57 LCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVE 136 (366)
Q Consensus 57 ~Caa~wg~~LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~~~~l~ 136 (366)
.|++.||++|++||++|+|+.+.++..+..++.+..+|+||.|+|+.|+|++|+| +.|++|+|+.|...........+
T Consensus 1 ~c~~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd--~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 1 VCADSWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD--GQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCcccCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC--CccEEEEchhhcccccccccccc
Confidence 3999999999999999999999854455668888888999999999999999985 79999999999854321111111
Q ss_pred ee-eeeeEeecCCCceEEE-EEEEcCeEEEEEEECCcEEEEEecCCCcccc-ceeeeecccCCCceEEEEeeecCCeEEE
Q psy15182 137 RR-NGWINVGDLQGAVHFR-IVKYERIKFLVIALKDSIEIYAWAPKPYHKF-MAFKSFGELGYRPLLVDLTVEEGTRLKV 213 (366)
Q Consensus 137 k~-kg~~~v~~~kgc~~f~-v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF-~~~Kef~~lp~~p~~v~l~v~~~~~l~V 213 (366)
+. .....+.+++||++|+ ....++.++||||+|++|.+|+|.. +..+| +.+||| .+|++|..+. +.++.+||
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~-~~~~f~~~~ke~-~lp~~~~~i~---~~~~~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND-PRNSFSKLLKEI-SLPDPPSSIA---FLGNKICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC-CcccccceeEEE-EcCCCcEEEE---EeCCEEEE
Confidence 11 1234578899999999 5556778999999999999999986 45678 899998 5999998887 45788999
Q ss_pred EEecCCceEEEECCCCceEEeecCCCCC-------CCCcceEEEEecCCCCceEEEEEcceEEEEeCCCceeeeeeeeeC
Q psy15182 214 IYGSADGFHAVDLDSAMVYDIYLPKHIQ-------GPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWG 286 (366)
Q Consensus 214 ~~g~~~gF~~idl~~~~~~~L~~p~~~~-------~~~~p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G~~sr~~~l~W~ 286 (366)
|+. ++|.++|++++++.+++++.+.. ....|+.++.+++ +|||||||++|+|||.+|+++|...|+|+
T Consensus 154 ~~~--~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~ 228 (275)
T PF00780_consen 154 GTS--KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD---NEFLLCYDNIGVFVNKNGEPSRKSTIQWS 228 (275)
T ss_pred EeC--CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC---ceEEEEecceEEEEcCCCCcCcccEEEcC
Confidence 887 99999999999999999765432 3567888888875 59999999999999999999999999999
Q ss_pred CCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEeccCCCceeEEEEeC
Q psy15182 287 EMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERN 337 (366)
Q Consensus 287 ~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k~~~~lr~L~~~~ 337 (366)
+.|++++| .+|||+||++++||||++.+|+|+|+|. .+++|+|++++
T Consensus 229 ~~p~~~~~-~~pyli~~~~~~iEV~~~~~~~lvQ~i~---~~~~~~l~~~~ 275 (275)
T PF00780_consen 229 SAPQSVAY-SSPYLIAFSSNSIEVRSLETGELVQTIP---LPNIRLLCSGS 275 (275)
T ss_pred CchhEEEE-ECCEEEEECCCEEEEEECcCCcEEEEEE---CCCEEEEecCC
Confidence 99999999 7999999999999999999999999999 99999998753
No 4
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-38 Score=324.19 Aligned_cols=273 Identities=21% Similarity=0.318 Sum_probs=210.1
Q ss_pred CceeEEeEEe--cceEEEeecceeEEEEec-CCC---ceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhc
Q psy15182 53 GSEILCAALW--GVNLLIGTETGLMLLDRS-GQG---KVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKS 126 (366)
Q Consensus 53 ~~~I~Caa~w--g~~LllGTeeGlyll~~~-~~~---~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~ 126 (366)
.++++|+..+ |+.||+||..|+|++.+. +.. ++...+.++.|+||+|+|++++||.++|| .||.+||+.++.
T Consensus 857 ~nkvn~v~~~dsgr~ll~~T~kglYis~~k~~~~~f~kpI~~l~~~nISQi~vieey~lmlllsdk--~LY~~pl~vid~ 934 (1175)
T COG5422 857 TNKVNPVPLYDSGRKLLTGTNKGLYISNRKDNVNRFNKPIDLLQEPNISQIIVIEEYKLMLLLSDK--KLYSCPLDVIDA 934 (1175)
T ss_pred cceecceeeccCCCeEEEeccceeEEEEeccCcccccccHHHHhcCCcceeeehhhhhHHHHhhcC--eeecCccchhhh
Confidence 3889999888 566999999999999983 222 23345566789999999999999999966 999999999875
Q ss_pred cccccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEE-----EEEec-----CC--Ccccc---ceeeee
Q psy15182 127 KILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIE-----IYAWA-----PK--PYHKF---MAFKSF 191 (366)
Q Consensus 127 ~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~-----iy~w~-----~~--p~~kF---~~~Kef 191 (366)
.......+..+- ..+..+|+.+-|.+ +.|+||+|+.+. +++.. .+ ++-|+ ..++|+
T Consensus 935 ~~~~~~kksr~~--------~~hvsffk~G~C~g-k~lv~~~kS~~~~~~l~v~e~~~~~~~~~s~n~Kk~lt~~~~~el 1005 (1175)
T COG5422 935 STEENVKKSRIV--------NGHVSFFKQGFCNG-KRLVCAVKSSSLSATLAVIEAPLALKKNKSGNLKKALTIELSTEL 1005 (1175)
T ss_pred hhhhhhhhhhhe--------eceeEEEeeccccc-ceEEEeeeeheeeeeeeeecchhhhhcccCcchhhhhhhhheEEE
Confidence 321111111111 23577888777777 556667777533 33310 11 11122 126677
Q ss_pred cccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCceEEeecCCCC-------CCCCcceEEEEecCCCCceEEEEE
Q psy15182 192 GELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHI-------QGPICPHCIVALPNSNGMQLLLCY 264 (366)
Q Consensus 192 ~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~-------~~~~~p~~I~~l~~~~~~E~LLcy 264 (366)
+ +|..|..|.+ ...+||| ||.+||++|+|++...++|++|.|+ .+..+|.+|+++. +||||||
T Consensus 1006 ~-v~~E~~sv~F---lk~KlcI--gC~kgFeIvsle~l~~esLL~paD~s~~~~~~ken~kpiai~rv~----~eFLLCy 1075 (1175)
T COG5422 1006 Y-VPSEPLSVHF---LKNKLCI--GCKKGFEIVSLENLRTESLLNPADTSPLFFEKKENTKPIAIFRVS----GEFLLCY 1075 (1175)
T ss_pred E-ecCceeeeee---eccceEE--eecCCceEeechhhhhHhhcCcccccHHHHhhcccCceEEEEeeC----CcEEEEe
Confidence 5 8888877753 2446666 5569999999999999999999984 5789999999986 4999999
Q ss_pred cceEEEEeCCCceee-eeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEeccCCCceeEEEE------eC
Q psy15182 265 DNEGVYVNTYGKVSK-NILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCE------RN 337 (366)
Q Consensus 265 ~~~~vfVn~~G~~sr-~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k~~~~lr~L~~------~~ 337 (366)
+++|+|||.+||+.| +|.+.|++.|+.||+ ++|||+||.+++||||+++||+|++++. ++++|||+. ..
T Consensus 1076 s~faFfVN~~Gwrkrts~i~~Weg~Pq~Fal-sypYIlaf~~~fIeIr~ieTgeLI~~il---g~~IRlLt~grg~l~~~ 1151 (1175)
T COG5422 1076 SEFAFFVNDQGWRKRTSWIFHWEGEPQEFAL-SYPYILAFEPNFIEIRHIETGELIRCIL---GHNIRLLTDGRGPLLHG 1151 (1175)
T ss_pred cceeEEEcCcCceecccEEEEEcCccceeee-ecceEEEecCceEEEEecccceeeeeec---cCceEEeecCcccccCC
Confidence 999999999999985 889999999999999 9999999999999999999999999999 999999998 55
Q ss_pred CEEEEEeCCCCCe
Q psy15182 338 DKVFFSSAKGGGH 350 (366)
Q Consensus 338 d~vf~as~~~~~~ 350 (366)
+++|.++-..+.+
T Consensus 1152 geilY~c~e~~~~ 1164 (1175)
T COG5422 1152 GEILYKCYEDDVG 1164 (1175)
T ss_pred CceeeecccCCCC
Confidence 6677776554443
No 5
>KOG4305|consensus
Probab=99.95 E-value=3.4e-28 Score=260.20 Aligned_cols=272 Identities=24% Similarity=0.380 Sum_probs=191.7
Q ss_pred ceeEEeEEe--cceEEEeecceeEEEEecCCC-----ceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhc
Q psy15182 54 SEILCAALW--GVNLLIGTETGLMLLDRSGQG-----KVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKS 126 (366)
Q Consensus 54 ~~I~Caa~w--g~~LllGTeeGlyll~~~~~~-----~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~ 126 (366)
++++|.... |..+++||.+|+|.+++.... .+.++.. .+|+||+|+|+.++++.+. ++.||.++|+.+..
T Consensus 709 nk~n~~~~~~~~~~~l~~~~~G~~~s~~~~~~~~~~~~~~~~~~-~~i~q~~v~ee~~~l~~l~--dk~Ly~~~l~~~~a 785 (1029)
T KOG4305|consen 709 NKVNEPVICDGGRIDLFGTNEGLYVSNRKTSYGIPVGPIVKLQK-NNISQIEVNEESKLLLLLI--DKKLYYCPLSMIDA 785 (1029)
T ss_pred ccccceeeccCcchhccccccceEEeehhhcCCccccchhhhhc-cchhhhhhhhhccceeeeh--hhHHhhCCcceeee
Confidence 345555554 345899999999999973211 1223333 3799999999999999997 66999999977653
Q ss_pred cccccCCccee--eeeeeEeecCCCceEEEEEEEcCeEEEEEEECCc-----EEEEEec-----CCCcc---cc--ceee
Q psy15182 127 KILKMDGQVER--RNGWINVGDLQGAVHFRIVKYERIKFLVIALKDS-----IEIYAWA-----PKPYH---KF--MAFK 189 (366)
Q Consensus 127 ~~~~~~~~l~k--~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~-----i~iy~w~-----~~p~~---kF--~~~K 189 (366)
.. ....+ +.+. .-..+...|+.+.+.| +.+|+|+++. |.+|... ++.+. +| ..++
T Consensus 786 e~----~~~~~~~~~~~---vl~~~v~~fk~g~~~g-k~~v~~~~~~~l~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (1029)
T KOG4305|consen 786 EG----NIASKTSREET---VLRRHVDFFKEGDCKG-KILVCAVKSSVLGNTVKIFEFLLVISNPASGNELKKFLKVGLT 857 (1029)
T ss_pred cc----ccccccccccc---hhhhhhhhhhcccccC-ceEEEEEeeccCCceEEEEechhhhcCCcchhhhhhhhhccch
Confidence 11 11111 0110 0011234454444444 5667777764 5566532 11222 22 1245
Q ss_pred eecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCceEEeecCCCC-------CCCCcceEEEEecCCCCceEEE
Q psy15182 190 SFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHI-------QGPICPHCIVALPNSNGMQLLL 262 (366)
Q Consensus 190 ef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~-------~~~~~p~~I~~l~~~~~~E~LL 262 (366)
||. ++..|..+++ -..++|| ||.+||++++++....+.|.+|.+. .+..+|.+|+++. +||||
T Consensus 858 d~~-~~~~~~s~~f---lk~k~~v--~~~k~f~i~sl~~~~~~~l~~~~~~~~~~~~~~~~~kp~~ifri~----~~Fll 927 (1029)
T KOG4305|consen 858 DFF-VDSEPVSVSF---LKNKLCV--GCKKGFEIVSLSNKTAESLLNPADNSPLFFEKRENTKPVAIFRIS----GEFLL 927 (1029)
T ss_pred hcc-ccccchhHhH---hccceee--eecCCCceeccchhhhhccCCCccchHHHHhhhccCceeEEEEec----CeEEE
Confidence 553 6666665542 1345666 5559999999997777888888763 4789999999996 39999
Q ss_pred EEcceEEEEeCCCceee-eeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEeccCCCceeEEEEe-----
Q psy15182 263 CYDNEGVYVNTYGKVSK-NILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCER----- 336 (366)
Q Consensus 263 cy~~~~vfVn~~G~~sr-~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k~~~~lr~L~~~----- 336 (366)
||+++|||||.+||+++ ++.|.|++.|..+|. ++|||+||++++||||+++||+|+|+++ ++++|++.++
T Consensus 928 cy~~~~f~vn~~G~~~~~~~~~~w~g~p~~~a~-~~~yiia~~~~fIeI~~~~t~eli~~i~---~~~Ir~~~~~~~~l~ 1003 (1029)
T KOG4305|consen 928 CYDEFAFFVNDQGWRSRTSWIFLWEGEPQEFAL-SYPYIIAFGDNFIEIRDLETGELIQIIL---GQNIRLLTSGLGPLL 1003 (1029)
T ss_pred EecceEEEEcCCcceecccEEEEEcCccceeee-ecceEEEecCceEEEEecccceeeEEee---ccceeEeecCccccc
Confidence 99999999999999985 889999999999999 9999999999999999999999999999 9999999883
Q ss_pred -CCEEEEEeCCCCCe
Q psy15182 337 -NDKVFFSSAKGGGH 350 (366)
Q Consensus 337 -~d~vf~as~~~~~~ 350 (366)
+.++++...++..+
T Consensus 1004 ~~~~~~~~~~~~~~~ 1018 (1029)
T KOG4305|consen 1004 HGGKIIYYCYHPPDG 1018 (1029)
T ss_pred CCCeEEEEEecCccc
Confidence 34455555544433
No 6
>KOG0576|consensus
Probab=99.95 E-value=2e-28 Score=250.39 Aligned_cols=301 Identities=22% Similarity=0.311 Sum_probs=229.7
Q ss_pred eEeeecC---CceeEEeEEe------cceEEEeecceeEEEEecC--CCceEEeecCCceEEEEEecCCCeEEEEECCCC
Q psy15182 46 RKYKKKF---GSEILCAALW------GVNLLIGTETGLMLLDRSG--QGKVYQLVNRRRFQQMEVLEGQNILVTISGKRN 114 (366)
Q Consensus 46 ~~~~k~f---~~~I~Caa~w------g~~LllGTeeGlyll~~~~--~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~ 114 (366)
.||+|.| |.+|+|+++| ++.|++|||||+|.++++. +..+.+++.+| ++|++|+ .|.|+.++||..
T Consensus 481 acfsKvfngCpl~i~~aaswIhp~t~dq~ll~gaeegIy~lnlnel~e~~le~l~~~r-~Twly~~--~n~l~slsgks~ 557 (829)
T KOG0576|consen 481 ACFSKVFNGCPLRIHCAASWIHPSTRDQALLFGAEEGIYTLNLNELHEATLEKLFPRR-CTWLYVI--NNVLTSLSGKST 557 (829)
T ss_pred HHHHHHhccCcccceecccccCcchhhhHhhhhhccceeeccccccccccHhhccccC-ceEEEec--CceeeeccCCcc
Confidence 4677777 6999999999 4559999999999999853 34456888887 9999999 899999999999
Q ss_pred eEEEEEchhhhcc---------ccccCC--cceeeeee-eEeecCCCceEEEEEEE--cCeEEEEEEECCcEEEEEecCC
Q psy15182 115 RVRVFYLSWLKSK---------ILKMDG--QVERRNGW-INVGDLQGAVHFRIVKY--ERIKFLVIALKDSIEIYAWAPK 180 (366)
Q Consensus 115 ~L~v~~L~~L~~~---------~~~~~~--~l~k~kg~-~~v~~~kgc~~f~v~~~--~~~~~LcvA~k~~i~iy~w~~~ 180 (366)
++|.|+|-.|... +.+..+ .++++..- +.+.++|||+.++|.+. .+.+|||.|++.++.+++|++
T Consensus 558 ~ly~H~l~~l~~~~~~~~~~s~~~h~~per~~prk~a~stkipeTkgc~~c~V~R~~~~g~~~lc~alp~sivl~qwy~- 636 (829)
T KOG0576|consen 558 QLYSHDLGGLFEAGEGTLFGSIIVHKEPERILPRKFALSTKIPETKGCQQCCVVRNPYTGGKFLCGALPTSIVLLQWYE- 636 (829)
T ss_pred ceeecchHHHHhhhcccccccccccCCCccccchhhceeeecCccccceeeeeecCCCCCCceeecccCceeEEeeecC-
Confidence 9999999887642 111111 23343332 23899999999999885 788999999999999999997
Q ss_pred Cccccceeeeec-ccCCCceEEEEeeecCC---eEEEEEecCC-------ceEEEECCCCceEEeecCCCCCCCCcceEE
Q psy15182 181 PYHKFMAFKSFG-ELGYRPLLVDLTVEEGT---RLKVIYGSAD-------GFHAVDLDSAMVYDIYLPKHIQGPICPHCI 249 (366)
Q Consensus 181 p~~kF~~~Kef~-~lp~~p~~v~l~v~~~~---~l~V~~g~~~-------gF~~idl~~~~~~~L~~p~~~~~~~~p~~I 249 (366)
|+++|+.+|.|. .+|.+-..+++.+..+. .+|+|+.-.. -|+-++++....++++.. + +...+..+
T Consensus 637 Pm~kf~l~k~i~~pl~~p~~~f~~l~~~~~e~p~vc~Gv~~~~~~~~~~v~f~~~~~~~~~~w~~~~~-~--~~~~v~~v 713 (829)
T KOG0576|consen 637 PMNKFMLVKSISFPLPSPLSVFEMLVLPESEYPQVCVGVSAGGGTLNNEVLFHTAFLNSDSSWDIEAA-G--ETLPVPQV 713 (829)
T ss_pred hHHhhhHHHhcccCCCCccchhhhccccCcccceeeeeccCCCCCCCceeEEEecccccccccceecc-C--cccCCcee
Confidence 999999999873 46666666776665443 3566664333 377777777777766632 2 12223334
Q ss_pred EEecCCCCceEEEEEcceEEEEeCCCc--ee--eeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEecc
Q psy15182 250 VALPNSNGMQLLLCYDNEGVYVNTYGK--VS--KNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHK 325 (366)
Q Consensus 250 ~~l~~~~~~E~LLcy~~~~vfVn~~G~--~s--r~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k 325 (366)
.++ +++.+|+||+++...||.+|+ .+ ...+|.++..|++++++ ...+++|+.++++.|++.++++.|.|. +
T Consensus 714 ~qv---drd~I~v~~~n~V~~v~lqG~~~~~~~~~sel~f~f~iesv~~~-~gsvlaf~~hgvqgr~l~S~~vtqei~-d 788 (829)
T KOG0576|consen 714 TQV---DRDTILVLFENMVKIVNLQGNGKVAVKLLSELTFDFDIESVVCL-QGSVLAFWKHGVQGRSLTSNEVTQEIQ-D 788 (829)
T ss_pred EEe---cccceEeeecCeeEEEeccCCccccccccccccccCCcceEEee-CCceecccCCcceeeeccchHHHHHHH-H
Confidence 444 457999999999999999995 33 45589999999999995 999999999999999999999999986 3
Q ss_pred CCCceeEEEEeCCEEEEEeCCCC--Cee-EEEEEec
Q psy15182 326 KSQRLKFLCERNDKVFFSSAKGG--GHC-QIYFMTL 358 (366)
Q Consensus 326 ~~~~lr~L~~~~d~vf~as~~~~--~~~-~v~~~~~ 358 (366)
..+..|+|.+.+.++.-+.+..+ .++ .+|+++.
T Consensus 789 ~tr~~rllgs~rvi~lesq~t~~~~~~s~~~~~L~g 824 (829)
T KOG0576|consen 789 LTRHFRLLGSDRVIILESQPTQNPQAISNNLYILAG 824 (829)
T ss_pred HHHHHHHhcCCchhhhhcccCCCccCCCchhhHHhc
Confidence 36888899998887777766332 223 5666554
No 7
>KOG2063|consensus
Probab=99.92 E-value=6.5e-25 Score=234.16 Aligned_cols=282 Identities=20% Similarity=0.265 Sum_probs=224.0
Q ss_pred CceeeEeeecCCceeE-EeEEecceEEEeecceeEEEEe---cC------C----CceEEeecCCceEEEEEecCCCeEE
Q psy15182 42 TPEIRKYKKKFGSEIL-CAALWGVNLLIGTETGLMLLDR---SG------Q----GKVYQLVNRRRFQQMEVLEGQNILV 107 (366)
Q Consensus 42 ~p~~~~~~k~f~~~I~-Caa~wg~~LllGTeeGlyll~~---~~------~----~~~~~l~~~k~v~Ql~Vle~~~lLi 107 (366)
++.+....+++|.++. |.+.||++|++||++|...++. ++ . ....+.+++++|.+|.|++.+++|+
T Consensus 4 a~~~~~i~~~~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll 83 (877)
T KOG2063|consen 4 AFTLVEILERLPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLL 83 (877)
T ss_pred ccchhhHhhhcCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchh
Confidence 4455566778899999 9999999999999999877764 11 0 1124677889999999999999999
Q ss_pred EEECCCCeEEEEEchhhhccccccCCcceeeeeeeEeecCCCceEEEEEEEc---C--eEEEEEEECCcEEEEEecCCCc
Q psy15182 108 TISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYE---R--IKFLVIALKDSIEIYAWAPKPY 182 (366)
Q Consensus 108 ~lsGk~~~L~v~~L~~L~~~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~---~--~~~LcvA~k~~i~iy~w~~~p~ 182 (366)
+++ |+++.+|.|..|.+ .+. ..+.|||..|+..... + ..++|+++++++..|.|..++.
T Consensus 84 ~l~--dsqi~~~~l~~~~~-----~~~---------~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~ 147 (877)
T KOG2063|consen 84 ILS--DSQIAVHKLPELEP-----VPS---------GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDG 147 (877)
T ss_pred eec--CCcceeeecCcccc-----ccc---------ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCc
Confidence 998 78999999988873 122 3446778888864422 3 4589999999999999987554
Q ss_pred cccceeeeecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceEEE
Q psy15182 183 HKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLL 262 (366)
Q Consensus 183 ~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LL 262 (366)
+...+++ .+|+.|.... |++...|++.. +.+++|+.++.......-|+....-..++.|..+++ +.++++
T Consensus 148 --~~~~~~~-~~~~~p~~~~---~~~~~~c~~~~--~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~--~~~ll~ 217 (877)
T KOG2063|consen 148 --IVLVKEL-GFPDVPKARA---WCGHIVCLGLK--KSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSD--QSELLL 217 (877)
T ss_pred --eEEEEec-ccccchhhhc---ccceeEEEeec--ceeEEEecCCCccccceeeeccccccCCCeEEEecC--CceEEE
Confidence 4477787 5899987665 67888899887 789999998433333222443222456677888874 359999
Q ss_pred EEcceEEEEeCCCceeeeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEE-eccCCCceeEEEE-eCCEE
Q psy15182 263 CYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVF-MHKKSQRLKFLCE-RNDKV 340 (366)
Q Consensus 263 cy~~~~vfVn~~G~~sr~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i-~~k~~~~lr~L~~-~~d~v 340 (366)
|.|+.|+|||.+|.....-.+.|+..|.++++ .+|||+|..+.+||||+..++.++|+| . .++.+.|++ .++++
T Consensus 218 ~kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~-~~PYlIa~~~~~veI~s~~~~qlvQSI~~---~~~~~~l~s~~~~i~ 293 (877)
T KOG2063|consen 218 GKDNIGVVVDLNGIIAQRGTLVWSEVPLSVVV-ESPYLIALLDRSVEIRSKLDGQLVQSITP---LSNGRSLLSAHNGII 293 (877)
T ss_pred ccCceEEEEecCCcccCCCceEecccchhhcc-cCceEEEEccccEEEEeccCHHHhhcccc---ccccceeeecCCcEE
Confidence 99999999999999966669999999999999 799999999999999999999999999 6 778887777 66888
Q ss_pred EEEeCCCCCeeEEEEEec
Q psy15182 341 FFSSAKGGGHCQIYFMTL 358 (366)
Q Consensus 341 f~as~~~~~~~~v~~~~~ 358 (366)
|+++ .+.+||+.-
T Consensus 294 ~~~~-----~s~v~~L~p 306 (877)
T KOG2063|consen 294 FVAS-----LSNVWILVP 306 (877)
T ss_pred EEEe-----ccceEEEEe
Confidence 8888 899999863
No 8
>KOG0976|consensus
Probab=99.17 E-value=3e-12 Score=133.12 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=155.5
Q ss_pred ceeEEeEEecce-EEEeecceeEEEEecCCCceEEeecCCceEEEEEecCCCeEEEEECCCCe-EEEEEchhhhcc----
Q psy15182 54 SEILCAALWGVN-LLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNR-VRVFYLSWLKSK---- 127 (366)
Q Consensus 54 ~~I~Caa~wg~~-LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~-L~v~~L~~L~~~---- 127 (366)
++.+|++++.+- .+|||++|+|.+.. |+...+.+.+.-++.|+.+|....-+++|.|.... -.-|.+ .|...
T Consensus 845 y~~~gadple~p~f~idlnkeqw~Lrt-gqe~~~~v~dimrvfnvliIK~~~r~l~I~ap~~~saerwA~-CLq~aqk~r 922 (1265)
T KOG0976|consen 845 YDMNGADPLEDPVFLIDLNKEQWALRT-GQESLTHVPDIMRVFNVLIIKDLERLLMIAAPSPKSAERWAL-CLQDAQKVR 922 (1265)
T ss_pred hhccCCccccCceEEeecchhHHHHHh-ccccccCCcchhhhheeeeecchhhhheeecCCCccHHHHHH-HHHHHHHHH
Confidence 788999988654 99999999999984 55555667777789999999999888988773210 000000 12110
Q ss_pred -ccccCC-cceeeeeeeE-eecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeeecccCCCceEEEEe
Q psy15182 128 -ILKMDG-QVERRNGWIN-VGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLT 204 (366)
Q Consensus 128 -~~~~~~-~l~k~kg~~~-v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~ 204 (366)
.+...+ .+.. --|.. +...+||+.|+.+..+.-.++|.+++..+.+.....+| .+...-|++. ..+++..|.
T Consensus 923 mmlnsk~ssiae-~~cllil~apnnlkiFkA~tIEdwilfatqtglfftsisqprNp-sriagp~svt-slE~mseI~-- 997 (1265)
T KOG0976|consen 923 MMLNSKHSSIAE-DICLLILEAPNNLKIFKAGTIEDWILFATQTGLFFTSISQPRNP-SRIAGPKSVT-SLEPMSEIH-- 997 (1265)
T ss_pred HHhccCCCCccc-chhhHHHhccccceeecccccccceeEeecCCceEEEeecCCCc-hhhcCccccc-cccccceee--
Confidence 011111 1111 01111 44568999999988777788888888887776665544 2334445542 344444443
Q ss_pred eecCCeEEEEEecCCceEEEECCCCceEEeecCCCCC---------CCCcceEEEEec-CCCCceEEEEEcceEEEEeCC
Q psy15182 205 VEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQ---------GPICPHCIVALP-NSNGMQLLLCYDNEGVYVNTY 274 (366)
Q Consensus 205 v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~---------~~~~p~~I~~l~-~~~~~E~LLcy~~~~vfVn~~ 274 (366)
||..-..+.|+++|+---+.....+.+|++ +.+.|..+.... ..-.-++++||.+|++|+|+.
T Consensus 998 -------cvamI~ns~~qla~ipldsL~lamqst~pSirpeVlpef~hvh~i~yhQqngqrfll~sddt~lh~rkyn~tr 1070 (1265)
T KOG0976|consen 998 -------CVAMIGNSKFQLADIPLDSLELAMQSTDPSIRPEVLPEFSHVHPISYHQQNGQRFLLESDDTFLHFRKYNDTR 1070 (1265)
T ss_pred -------EEEEEecCcceeecCchhHHHHHHhcCCCccchhhhhhhcCcceeEEEEecccchhhhhhhhHHHHhhhcccc
Confidence 222222467788887422222222233321 122333333321 111146777999999999999
Q ss_pred CceeeeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCC
Q psy15182 275 GKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETG 316 (366)
Q Consensus 275 G~~sr~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg 316 (366)
|++++--.+.|+ .|.+|+| +.||.+.|..|..++--++--
T Consensus 1071 d~fs~~akl~vp-ePlsFie-s~P~gfifa~dtfyyv~ldhq 1110 (1265)
T KOG0976|consen 1071 DRFSRTAKLKVP-EPLSFIE-SEPYGFIFAFDTFYYVELDHQ 1110 (1265)
T ss_pred hhhhhcccccCC-Cchhhhh-cCcceEEEecceEEEEeeccc
Confidence 999999999999 9999999 999999999988887766443
No 9
>KOG0976|consensus
Probab=98.93 E-value=8.9e-10 Score=115.10 Aligned_cols=245 Identities=18% Similarity=0.271 Sum_probs=168.3
Q ss_pred CceeEEeEEecceEEEeecceeEEEEecCCCceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccccccC
Q psy15182 53 GSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMD 132 (366)
Q Consensus 53 ~~~I~Caa~wg~~LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~~ 132 (366)
+.+|.=|-.+.++|++.|.-|+|..-.+-+..+.++-.++.|+-+++..+.+..++|...+.++-..+|+.|.-....++
T Consensus 946 nlkiFkA~tIEdwilfatqtglfftsisqprNpsriagp~svtslE~mseI~cvamI~ns~~qla~ipldsL~lamqst~ 1025 (1265)
T KOG0976|consen 946 NLKIFKAGTIEDWILFATQTGLFFTSISQPRNPSRIAGPKSVTSLEPMSEIHCVAMIGNSKFQLADIPLDSLELAMQSTD 1025 (1265)
T ss_pred cceeecccccccceeEeecCCceEEEeecCCCchhhcCccccccccccceeeEEEEEecCcceeecCchhHHHHHHhcCC
Confidence 46666676777889999999999998765445668888889999999999999999977788888899988774444466
Q ss_pred CcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeeecccCCCceEEEEeeecCCeEE
Q psy15182 133 GQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLK 212 (366)
Q Consensus 133 ~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~ 212 (366)
|++.... ++...+.+.-++...+|.+++.+..---..+=.++ .+++.|-.+-.+ .+|.|-..+. ....-
T Consensus 1026 pSirpeV----lpef~hvh~i~yhQqngqrfll~sddt~lh~rkyn-~trd~fs~~akl-~vpePlsFie-----s~P~g 1094 (1265)
T KOG0976|consen 1026 PSIRPEV----LPEFSHVHPISYHQQNGQRFLLESDDTFLHFRKYN-DTRDRFSRTAKL-KVPEPLSFIE-----SEPYG 1094 (1265)
T ss_pred Cccchhh----hhhhcCcceeEEEEecccchhhhhhhhHHHHhhhc-ccchhhhhcccc-cCCCchhhhh-----cCcce
Confidence 6654321 44555677777777777776553322211111111 244445454454 3663322222 22222
Q ss_pred EEEecCCceEEEECC----CC-ceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEcceEEEEeCCCceeeeeeeeeCC
Q psy15182 213 VIYGSADGFHAVDLD----SA-MVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGE 287 (366)
Q Consensus 213 V~~g~~~gF~~idl~----~~-~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G~~sr~~~l~W~~ 287 (366)
+.|. .+-|+.|.++ +| .+..+.+|..+.-...++. +. ..|+||.|.|-|+|||..|.-++...+.|+.
T Consensus 1095 fifa-~dtfyyv~ldhqsss~vsARklm~p~~~~yp~sA~s---i~---anelllaYQnkGifVnl~Geqsrn~siewek 1167 (1265)
T KOG0976|consen 1095 FIFA-FDTFYYVELDHQSSSGVSARKLMDPPNPRYPGSAIS---IG---ANELLLAYQNKGIFVNLSGEQSRNTSIEWEK 1167 (1265)
T ss_pred EEEe-cceEEEEeecccCCCCCchhhhcCCCCCCCCcchhh---cc---HHHHHHHhhccCeEEecccccCCcccccccc
Confidence 3333 4788888887 22 3345566654321222222 22 2699999999999999999999999999999
Q ss_pred CCcEEEEccCCeEEEEeCCeEEEEEccCC
Q psy15182 288 MPTSVAYIGTGQIMGWGNKAIEIRSVETG 316 (366)
Q Consensus 288 ~P~sva~~~~PYil~f~~~~IEIR~v~tg 316 (366)
+|--++| ..|.+--.+.+.|||--+...
T Consensus 1168 mp~ef~Y-tspilyiVhddsiei~~is~s 1195 (1265)
T KOG0976|consen 1168 MPGEFTY-TSPILYIVHDDSIEIHPISPS 1195 (1265)
T ss_pred CCCCccc-cCceEEEeccCCccccccCCC
Confidence 9999999 899999999999999877665
No 10
>KOG0612|consensus
Probab=97.77 E-value=5.2e-08 Score=106.38 Aligned_cols=218 Identities=13% Similarity=0.061 Sum_probs=149.2
Q ss_pred eeEEeEEecce-EEEeecce-eEEEEecCCCceEEeecCCceEEEEEecCCCeEEEEEC--CCCeEEEEEchhhhccccc
Q psy15182 55 EILCAALWGVN-LLIGTETG-LMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISG--KRNRVRVFYLSWLKSKILK 130 (366)
Q Consensus 55 ~I~Caa~wg~~-LllGTeeG-lyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsG--k~~~L~v~~L~~L~~~~~~ 130 (366)
.+.|.+..+.+ ..||+..| ||.++.. .++.+.+. .|..++|.+++| +++.|++++-..++.
T Consensus 1056 ~~~~~~~id~~~~~I~~l~~~L~~~~~~-----~~v~~~~~------~e~e~~l~~l~~~~~eg~lsl~~~~~~~~---- 1120 (1317)
T KOG0612|consen 1056 KILLQMIIDSKASEIEELRSKLYEINDS-----SSVGSQPE------DEAEQILPLLQGSRLEGWLSLPPRQNLDR---- 1120 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhHHHhhh-----hhcccCCc------chhhcchhhhhhhhhhcccccCccccccc----
Confidence 45566666655 88898776 8887731 23444443 788999999999 999999998766652
Q ss_pred cCCcceeeeeeeEeecCCCceEEEEEEEc--CeEEEEEEECCcEEEEEecC-CCccccceeeeecccCCCceEEE-Eeee
Q psy15182 131 MDGQVERRNGWINVGDLQGAVHFRIVKYE--RIKFLVIALKDSIEIYAWAP-KPYHKFMAFKSFGELGYRPLLVD-LTVE 206 (366)
Q Consensus 131 ~~~~l~k~kg~~~v~~~kgc~~f~v~~~~--~~~~LcvA~k~~i~iy~w~~-~p~~kF~~~Kef~~lp~~p~~v~-l~v~ 206 (366)
+ + -++.|..+++|++|.++... +.-++.+++++.+.+|+-.. ++++. ..+| + |.+++ +.+.
T Consensus 1121 --~-~----~~~~V~~s~~~~l~~~~~~~k~~~~~~il~i~k~~~v~~vt~~d~~~~--~~~e---i---p~~fq~l~~~ 1185 (1317)
T KOG0612|consen 1121 --D-W----KRIYVIVSSKKILFYVSEQDKEQSGPLILDIKKLFHVRQVTQTDVRRA--DAKE---I---PRIFQILYAN 1185 (1317)
T ss_pred --c-h----heeEEeecccceEeeeccccccccchhhhhhhhceeEEeecccccccc--hhhh---c---chhHHHHHhh
Confidence 1 1 12457888999999975532 33458999999999999864 45554 3334 3 44444 2222
Q ss_pred cCCeEEEEEecCCceEEEECCCCceEEeecCCCCCCCCc-------ceEEEEecCCCCceEEEEEcceEEEEeCCCceee
Q psy15182 207 EGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPIC-------PHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSK 279 (366)
Q Consensus 207 ~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~-------p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G~~sr 279 (366)
.+ . +++. ++|..+++. ...+..+.|....+. .-++..+++.- ++|++++.+++.|+|..|+
T Consensus 1186 ~~-~--~~~~--~~f~~l~l~---~~~~v~~~~~~~~~l~~~~~~~~~~~k~l~~~~-~~ye~~~~~~~~~~d~~~k--- 1253 (1317)
T KOG0612|consen 1186 EG-E--SGHP--SEFSYLSLG---PNSLVHKGHEFIPFLYHFPTNCEACIKPLWHMF-KAYECRRCHIKCHKDHMDK--- 1253 (1317)
T ss_pred cc-c--ccCc--cccchhhcc---chhhcCCCCcchHHHhhcchhHHHHhhhcccch-hHHHHHHhhcccccccccc---
Confidence 22 2 6666 899988886 333444544211111 11344454332 3999999999999999999
Q ss_pred eeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEecc
Q psy15182 280 NILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHK 325 (366)
Q Consensus 280 ~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k 325 (366)
++|+.. .+++ +.++++.|.+...+ +.+|||+|..+
T Consensus 1254 ---~m~p~k--y~~~-~a~~l~l~a~~~~d-----q~eWV~~l~k~ 1288 (1317)
T KOG0612|consen 1254 ---IMAPCK--YDTS-SARHLLLLAESTED-----QAKWVQRLVKK 1288 (1317)
T ss_pred ---ccCccc--cccc-CCccceeccCCchH-----HHHHHHHHhcc
Confidence 888644 8889 79999999999888 89999999843
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.18 E-value=7.8 Score=34.18 Aligned_cols=239 Identities=12% Similarity=0.064 Sum_probs=116.4
Q ss_pred CceeEEeEEec--ceEEEeecceeEEEE-ecCCCceEEee-cCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccc
Q psy15182 53 GSEILCAALWG--VNLLIGTETGLMLLD-RSGQGKVYQLV-NRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKI 128 (366)
Q Consensus 53 ~~~I~Caa~wg--~~LllGTeeGlyll~-~~~~~~~~~l~-~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~ 128 (366)
+..|.|.+.-. +.|+.|+++|...+. .........+. ....+..+...++.+.+++. +.++.+++|++..-...
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~- 86 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG-SSDKTIRLWDLETGECV- 86 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEE-cCCCeEEEEEcCcccce-
Confidence 35677775432 448888877765554 33221222222 23467888888877666654 46899999998642100
Q ss_pred cccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEE-CCcEEEEEecCCCccccceeeeecccCCCceEEEEeeec
Q psy15182 129 LKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIAL-KDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEE 207 (366)
Q Consensus 129 ~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~-k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~ 207 (366)
..+... .... .++.......+++++. ...+.+|.... . ...+.+...+.....+.+ ..
T Consensus 87 ----~~~~~~--------~~~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~---~~~~~~~~~~~~i~~~~~--~~ 145 (289)
T cd00200 87 ----RTLTGH--------TSYV--SSVAFSPDGRILSSSSRDKTIKVWDVET--G---KCLTTLRGHTDWVNSVAF--SP 145 (289)
T ss_pred ----EEEecc--------CCcE--EEEEEcCCCCEEEEecCCCeEEEEECCC--c---EEEEEeccCCCcEEEEEE--cC
Confidence 000000 0011 1122222235555555 45566655431 1 122232211222333332 22
Q ss_pred CCeEEEEEec-CCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEc-ceEEEEeCC-Cceeeeeeee
Q psy15182 208 GTRLKVIYGS-ADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYD-NEGVYVNTY-GKVSKNILLQ 284 (366)
Q Consensus 208 ~~~l~V~~g~-~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~-~~~vfVn~~-G~~sr~~~l~ 284 (366)
...+.++ ++ .....++|++++.....+.. + .....++.-.+ ++..++.+.+ ..-...|.. |+....+. .
T Consensus 146 ~~~~l~~-~~~~~~i~i~d~~~~~~~~~~~~-~---~~~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~ 217 (289)
T cd00200 146 DGTFVAS-SSQDGTIKLWDLRTGKCVATLTG-H---TGEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTGKCLGTLR-G 217 (289)
T ss_pred cCCEEEE-EcCCCcEEEEEccccccceeEec-C---ccccceEEECC--CcCEEEEecCCCcEEEEECCCCceecchh-h
Confidence 2333332 32 45677888886665544421 1 11122232222 2235666653 222233443 33333321 2
Q ss_pred eCCCCcEEEEccC--CeEEEEe-CCeEEEEEccCCCEEEEEe
Q psy15182 285 WGEMPTSVAYIGT--GQIMGWG-NKAIEIRSVETGHLDGVFM 323 (366)
Q Consensus 285 W~~~P~sva~~~~--PYil~f~-~~~IEIR~v~tg~Lvq~i~ 323 (366)
.+..+.++++ .. .++++-. ...|.+..+.++...+.+.
T Consensus 218 ~~~~i~~~~~-~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 218 HENGVNSVAF-SPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred cCCceEEEEE-cCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 2345667777 34 2455444 7889999999999888876
No 12
>KOG1274|consensus
Probab=91.22 E-value=2.8 Score=46.13 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=76.5
Q ss_pred ceeeEeeecCCceeEEeEEecc--eEEEee-cceeEEEEecCCCceEEeecCC-ceEEEEEecCCCeEEEEECCCCeEEE
Q psy15182 43 PEIRKYKKKFGSEILCAALWGV--NLLIGT-ETGLMLLDRSGQGKVYQLVNRR-RFQQMEVLEGQNILVTISGKRNRVRV 118 (366)
Q Consensus 43 p~~~~~~k~f~~~I~Caa~wg~--~LllGT-eeGlyll~~~~~~~~~~l~~~k-~v~Ql~Vle~~~lLi~lsGk~~~L~v 118 (366)
++..-+..+|...|.|.+.-|. +++.|. |.++-+++..+......+.+.+ +|.|+..-++-++|.+.+ -|+.|++
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~i 164 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQI 164 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceEEE
Confidence 3666678888888888887754 677775 5788888864322223344444 899999999988888776 4789999
Q ss_pred EEchhhhccccccCCcceeeeeeeEeecCCCceEEEEEEE-cCeEEEEEEECCcEEEEE
Q psy15182 119 FYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKY-ERIKFLVIALKDSIEIYA 176 (366)
Q Consensus 119 ~~L~~L~~~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~-~~~~~LcvA~k~~i~iy~ 176 (366)
|++.... ....-+.+.+..++. ..+=|.. +..+ .+.+++++++++.|.+|.
T Consensus 165 w~~~~~~--~~~tl~~v~k~n~~~---~s~i~~~--~aW~Pk~g~la~~~~d~~Vkvy~ 216 (933)
T KOG1274|consen 165 WDLQDGI--LSKTLTGVDKDNEFI---LSRICTR--LAWHPKGGTLAVPPVDNTVKVYS 216 (933)
T ss_pred EEcccch--hhhhcccCCcccccc---ccceeee--eeecCCCCeEEeeccCCeEEEEc
Confidence 9997532 111122233332221 1111221 2232 234677777777776663
No 13
>KOG0294|consensus
Probab=90.14 E-value=21 Score=35.32 Aligned_cols=109 Identities=14% Similarity=0.289 Sum_probs=70.2
Q ss_pred ceeEEeEEecc----eEEEeecceeEEEEecCCCceEEee--cCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcc
Q psy15182 54 SEILCAALWGV----NLLIGTETGLMLLDRSGQGKVYQLV--NRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSK 127 (366)
Q Consensus 54 ~~I~Caa~wg~----~LllGTeeGlyll~~~~~~~~~~l~--~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~ 127 (366)
..|+|...+.. +||=|.|+|...+-+.+.=+..+-+ .+.+|+-|.+-|...|.|++ |.|..|+.|+|-..+..
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsV-g~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSV-GGDQVLRTWNLVRGRVA 162 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEE-cCCceeeeehhhcCccc
Confidence 56777766542 5999999999999875432221111 22369999999999999998 57889999999655432
Q ss_pred ccccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecC
Q psy15182 128 ILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAP 179 (366)
Q Consensus 128 ~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~ 179 (366)
... .+.. -.+. +-.....-+.++..+++|.+|+-..
T Consensus 163 ~v~---~L~~-----------~at~--v~w~~~Gd~F~v~~~~~i~i~q~d~ 198 (362)
T KOG0294|consen 163 FVL---NLKN-----------KATL--VSWSPQGDHFVVSGRNKIDIYQLDN 198 (362)
T ss_pred eee---ccCC-----------ccee--eEEcCCCCEEEEEeccEEEEEeccc
Confidence 110 0000 0111 1112233567888999999999753
No 14
>KOG1273|consensus
Probab=87.89 E-value=30 Score=34.30 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=119.1
Q ss_pred eEEeE--EecceEEEeecceeEEEEecCCCceEEeecC--CceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcccccc
Q psy15182 56 ILCAA--LWGVNLLIGTETGLMLLDRSGQGKVYQLVNR--RRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKM 131 (366)
Q Consensus 56 I~Caa--~wg~~LllGTeeGlyll~~~~~~~~~~l~~~--k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~ 131 (366)
.+|.. .||..|++|+-+|-.+++.=....+-++++. ++|+-+.--.+-..|++-| +|..+.+|+|.. +..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS-~D~si~lwDl~~--gs~l-- 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS-RDWSIKLWDLLK--GSPL-- 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec-CCceeEEEeccC--CCce--
Confidence 66665 5899999999999888874112223344543 5888888888777777765 899999999843 1111
Q ss_pred CCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeeecccCCCceEEEEeeecCCeE
Q psy15182 132 DGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRL 211 (366)
Q Consensus 132 ~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l 211 (366)
++--+-+ -.-+|...- ...+++++.-++.+-.+-...+ |-|.......=.++...+...- .--.+..+
T Consensus 101 -----~rirf~s--pv~~~q~hp---~k~n~~va~~~~~sp~vi~~s~-~~h~~Lp~d~d~dln~sas~~~-fdr~g~yI 168 (405)
T KOG1273|consen 101 -----KRIRFDS--PVWGAQWHP---RKRNKCVATIMEESPVVIDFSD-PKHSVLPKDDDGDLNSSASHGV-FDRRGKYI 168 (405)
T ss_pred -----eEEEccC--ccceeeecc---ccCCeEEEEEecCCcEEEEecC-CceeeccCCCcccccccccccc-ccCCCCEE
Confidence 1100000 001222111 2345777777777766666654 4443221111012223332210 11123334
Q ss_pred EEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEcceEEEEeCCCceeeeee---------
Q psy15182 212 KVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNIL--------- 282 (366)
Q Consensus 212 ~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G~~sr~~~--------- 282 (366)
..|-+ ...+.++|.+|.+...-+.-+. ..+|- .+.+.+..-.+.+|...|..|.++
T Consensus 169 itGts-KGkllv~~a~t~e~vas~rits------~~~IK--------~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r 233 (405)
T KOG1273|consen 169 ITGTS-KGKLLVYDAETLECVASFRITS------VQAIK--------QIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR 233 (405)
T ss_pred EEecC-cceEEEEecchheeeeeeeech------heeee--------EEEEeccCcEEEEecCCceEEEEehhhhcccCc
Confidence 44432 3456677776553322221100 11221 222222323333455444443332
Q ss_pred ----------------eeeCCCCcEEEEccCCeEEEEeC--CeEEEEEccCCCEEEEEec
Q psy15182 283 ----------------LQWGEMPTSVAYIGTGQIMGWGN--KAIEIRSVETGHLDGVFMH 324 (366)
Q Consensus 283 ----------------l~W~~~P~sva~~~~PYil~f~~--~~IEIR~v~tg~Lvq~i~~ 324 (366)
++|+.. .|.= ..-||.|=+. +++-|---..|+||..+..
T Consensus 234 ~~e~e~~~K~qDvVNk~~Wk~c--cfs~-dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 234 DGEVEPEHKLQDVVNKLQWKKC--CFSG-DGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred cCCcChhHHHHHHHhhhhhhhe--eecC-CccEEEeccccceeEEEEecCCcceeeeecC
Confidence 345422 2222 3458888776 5566667778999988873
No 15
>KOG1273|consensus
Probab=86.27 E-value=6.6 Score=38.77 Aligned_cols=125 Identities=18% Similarity=0.307 Sum_probs=72.8
Q ss_pred eeecCCceeEEeEE---e---cceEEEeecceeEEEEecCCCce---EEeecCCceEEEEEecCCCeEEEEECCCCeEEE
Q psy15182 48 YKKKFGSEILCAAL---W---GVNLLIGTETGLMLLDRSGQGKV---YQLVNRRRFQQMEVLEGQNILVTISGKRNRVRV 118 (366)
Q Consensus 48 ~~k~f~~~I~Caa~---w---g~~LllGTeeGlyll~~~~~~~~---~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v 118 (366)
+-+.-+.+.+-.+. + |+.++.||-.|-++++.-...++ .++.+...|+||.|- ..+-.+.+--.||.+|+
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ 222 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRT 222 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEE
Confidence 33333455555555 5 55699999999999885322222 356665678888875 44455555456999999
Q ss_pred EEchhhhccccccCCcceeeeeee-EeecCC-CceEEEEEEEcCeEEEEEEECCcEEEEEecC
Q psy15182 119 FYLSWLKSKILKMDGQVERRNGWI-NVGDLQ-GAVHFRIVKYERIKFLVIALKDSIEIYAWAP 179 (366)
Q Consensus 119 ~~L~~L~~~~~~~~~~l~k~kg~~-~v~~~k-gc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~ 179 (366)
|+++.+... .++..++...... .+.++. .|-.|. ....|+|++..+.=.+|.|..
T Consensus 223 ye~~di~~~--~r~~e~e~~~K~qDvVNk~~Wk~ccfs----~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 223 YEISDIDDE--GRDGEVEPEHKLQDVVNKLQWKKCCFS----GDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred Eehhhhccc--CccCCcChhHHHHHHHhhhhhhheeec----CCccEEEeccccceeEEEEec
Confidence 999987632 1111111000000 011111 122232 234799999988888999963
No 16
>KOG2106|consensus
Probab=86.00 E-value=36 Score=35.69 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=49.5
Q ss_pred EeeecCCceeEEeEEe--cceEEEeecceeEEEEecCCCceEEeecCCceEEEEEe--cCCCeEEEEECCCCeEEEEEch
Q psy15182 47 KYKKKFGSEILCAALW--GVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVL--EGQNILVTISGKRNRVRVFYLS 122 (366)
Q Consensus 47 ~~~k~f~~~I~Caa~w--g~~LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vl--e~~~lLi~lsGk~~~L~v~~L~ 122 (366)
.+.+++-....|++.- | .|++||-+|+|++-.-....+..+- +.=.||.|+ ..-+-.+++.-+|+.||+|..+
T Consensus 401 ~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~--~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 401 EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH--TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE--ecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 4667777889999854 5 6999999999987632222222221 123456555 3445566666699999999986
Q ss_pred h
Q psy15182 123 W 123 (366)
Q Consensus 123 ~ 123 (366)
+
T Consensus 478 ~ 478 (626)
T KOG2106|consen 478 A 478 (626)
T ss_pred C
Confidence 6
No 17
>KOG0264|consensus
Probab=83.71 E-value=11 Score=38.49 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=58.0
Q ss_pred EeeecCCceeEEeE--Eecce-EEEe-ecceeEEEEec-CCCceEEeecCC-ceEEEEEecCCCeEEEEECCCCeEEEEE
Q psy15182 47 KYKKKFGSEILCAA--LWGVN-LLIG-TETGLMLLDRS-GQGKVYQLVNRR-RFQQMEVLEGQNILVTISGKRNRVRVFY 120 (366)
Q Consensus 47 ~~~k~f~~~I~Caa--~wg~~-LllG-TeeGlyll~~~-~~~~~~~l~~~k-~v~Ql~Vle~~~lLi~lsGk~~~L~v~~ 120 (366)
.-.+.-..+++|.+ +|+.+ |+-| +|.=+.|.|+- -..++..+-+-+ .|.|++--|...-+++.||.|++|.+|+
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 33344468999997 35666 5555 47778888863 222333444443 7999999999999999999999999999
Q ss_pred chhhhc
Q psy15182 121 LSWLKS 126 (366)
Q Consensus 121 L~~L~~ 126 (366)
|+....
T Consensus 346 ls~ig~ 351 (422)
T KOG0264|consen 346 LSRIGE 351 (422)
T ss_pred cccccc
Confidence 987754
No 18
>KOG0294|consensus
Probab=79.56 E-value=8.9 Score=37.77 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=47.7
Q ss_pred CceeEEeEEecce-EEEeecceeEEEEecCCCceEE--eecCCceEEEEEe--cCCCeEEEEECCCCeEEEEEchh
Q psy15182 53 GSEILCAALWGVN-LLIGTETGLMLLDRSGQGKVYQ--LVNRRRFQQMEVL--EGQNILVTISGKRNRVRVFYLSW 123 (366)
Q Consensus 53 ~~~I~Caa~wg~~-LllGTeeGlyll~~~~~~~~~~--l~~~k~v~Ql~Vl--e~~~lLi~lsGk~~~L~v~~L~~ 123 (366)
|-+|.|+..-+.+ |++|-+++.-.+...+...+.- +-...||.-|.+. |+..+|++.| -|+.+++|++++
T Consensus 208 ~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS-SDG~I~vWd~~~ 282 (362)
T KOG0294|consen 208 PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTAS-SDGFIKVWDIDM 282 (362)
T ss_pred cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEec-cCceEEEEEccc
Confidence 5679999765554 9999998877665322222222 2233589999966 4556777664 799999999976
No 19
>KOG2445|consensus
Probab=78.06 E-value=75 Score=31.44 Aligned_cols=185 Identities=12% Similarity=0.169 Sum_probs=94.2
Q ss_pred EeecCC-ceEEEEEec-CCCeEEEEECCCCeEEEEEchh---hhccccccCCc-ceeeeeeeEeecCCCceEEEEEEEcC
Q psy15182 87 QLVNRR-RFQQMEVLE-GQNILVTISGKRNRVRVFYLSW---LKSKILKMDGQ-VERRNGWINVGDLQGAVHFRIVKYER 160 (366)
Q Consensus 87 ~l~~~k-~v~Ql~Vle-~~~lLi~lsGk~~~L~v~~L~~---L~~~~~~~~~~-l~k~kg~~~v~~~kgc~~f~v~~~~~ 160 (366)
.+-|.| .|+.+..-+ .++++++-.+.|+.||+|..-. |.+=.++.+.+ +.-+-|... ..-+|...+-.+ ..
T Consensus 107 tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~--~~~~CvsWn~sr-~~ 183 (361)
T KOG2445|consen 107 TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK--QPCFCVSWNPSR-MH 183 (361)
T ss_pred EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc--CcceEEeecccc-cc
Confidence 455555 788888775 4588888889999999998743 11100111000 000001000 011233332111 22
Q ss_pred eEEEEEEECC------cEEEEEecCCCccccceeeeecccCCCceEEEEeeecC-CeEEEEEecCCceEEEECCCC----
Q psy15182 161 IKFLVIALKD------SIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEG-TRLKVIYGSADGFHAVDLDSA---- 229 (366)
Q Consensus 161 ~~~LcvA~k~------~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~-~~l~V~~g~~~gF~~idl~~~---- 229 (366)
..+++|+--. ++.||+..++ ..|..++-++.+.+++-.-+.+...-+ ..-.+.++|.+|-+++++...
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~-~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i 262 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNEN-GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAI 262 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCC-cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchh
Confidence 3567777665 8999998764 235445545444444433333221112 223355566688888888621
Q ss_pred ceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEcceEEEEeCCCc
Q psy15182 230 MVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGK 276 (366)
Q Consensus 230 ~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G~ 276 (366)
...++..|.... ....+.|-.+.+-.+.---++||-.|-.....|.
T Consensus 263 ~~ee~~~~~~~~-~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 263 EEEEVLAPDLMT-DLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred hhhcccCCCCcc-ccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 112333332211 2222233334433335667899999988887774
No 20
>KOG0292|consensus
Probab=76.12 E-value=1.4e+02 Score=33.66 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=58.2
Q ss_pred CceEEEEEcceEEEEeCC---------CceeeeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEeccCC
Q psy15182 257 GMQLLLCYDNEGVYVNTY---------GKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKS 327 (366)
Q Consensus 257 ~~E~LLcy~~~~vfVn~~---------G~~sr~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k~~ 327 (366)
+.-+.+.-|.|+|+-..+ .+.+|....- +.-..+.|.....+|.-+++.|-+..|+.+..+.++. .
T Consensus 415 ~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~--~~~~~IF~ag~g~lll~~~~~v~lfdvQq~~~~~si~---~ 489 (1202)
T KOG0292|consen 415 EGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLP--ESTDDIFYAGTGNLLLRSPDSVTLFDVQQKKKVGSIK---V 489 (1202)
T ss_pred CceEEEEecceEEEEecCcceEEecccchhhhcccCc--ccccceeeccCccEEEEcCCeEEEEEeecceEEEEEe---c
Confidence 356667778888875422 2233433221 2233466656778999999999999999999999999 8
Q ss_pred CceeEEEEeCCEEEEE
Q psy15182 328 QRLKFLCERNDKVFFS 343 (366)
Q Consensus 328 ~~lr~L~~~~d~vf~a 343 (366)
.+.|..+..+|+-++|
T Consensus 490 s~vkyvvws~dm~~vA 505 (1202)
T KOG0292|consen 490 SKVKYVVWSNDMSRVA 505 (1202)
T ss_pred CceeEEEEcCccchhh
Confidence 8899888888774444
No 21
>KOG1446|consensus
Probab=75.89 E-value=84 Score=30.90 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=47.4
Q ss_pred eEEEEEEECC-cEEEEEec---CCCccccceeeeecccCCCceEEEEeeec-CCeEEEEEecCCce-EEEECCCCceEEe
Q psy15182 161 IKFLVIALKD-SIEIYAWA---PKPYHKFMAFKSFGELGYRPLLVDLTVEE-GTRLKVIYGSADGF-HAVDLDSAMVYDI 234 (366)
Q Consensus 161 ~~~LcvA~k~-~i~iy~w~---~~p~~kF~~~Kef~~lp~~p~~v~l~v~~-~~~l~V~~g~~~gF-~~idl~~~~~~~L 234 (366)
..++++|.+. .|.+|--+ .+||..|.. ..++.+..-++.... |..+.|+- ..+| +++|--+|+...-
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i-----~~~~~~ew~~l~FS~dGK~iLlsT--~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSI-----TDNDEAEWTDLEFSPDGKSILLST--NASFIYLLDAFDGTVKST 224 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEcc-----CCCCccceeeeEEcCCCCEEEEEe--CCCcEEEEEccCCcEeee
Confidence 3678888888 78888764 346554432 113333332333333 33344533 3554 4778878876644
Q ss_pred ecCCCCCCCCcceEEEEecCCCCceEEEEEc
Q psy15182 235 YLPKHIQGPICPHCIVALPNSNGMQLLLCYD 265 (366)
Q Consensus 235 ~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~ 265 (366)
+.- .+.....|.....-|+ .+|+||=+
T Consensus 225 fs~-~~~~~~~~~~a~ftPd---s~Fvl~gs 251 (311)
T KOG1446|consen 225 FSG-YPNAGNLPLSATFTPD---SKFVLSGS 251 (311)
T ss_pred Eee-ccCCCCcceeEEECCC---CcEEEEec
Confidence 411 1222323333333344 57777654
No 22
>KOG0302|consensus
Probab=75.74 E-value=22 Score=35.87 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=56.0
Q ss_pred eeecCCceeEEeEEecce---EEEeecceeEEEE-e-cC-CCceEEee--cCCceEEEEEecCCCeEEEEECCCCeEEEE
Q psy15182 48 YKKKFGSEILCAALWGVN---LLIGTETGLMLLD-R-SG-QGKVYQLV--NRRRFQQMEVLEGQNILVTISGKRNRVRVF 119 (366)
Q Consensus 48 ~~k~f~~~I~Caa~wg~~---LllGTeeGlyll~-~-~~-~~~~~~l~--~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~ 119 (366)
+.|.++.+||-. .|.++ |+-|-++|.+.+- + .- .+.++-.| .+.+|+-|+--+...-.|+.+|.|+++..|
T Consensus 297 ~~kAh~sDVNVI-SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 297 STKAHNSDVNVI-SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred EeeccCCceeeE-EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 447888999976 68644 8889999999764 2 11 11122223 345899999999889999999999999999
Q ss_pred Echh
Q psy15182 120 YLSW 123 (366)
Q Consensus 120 ~L~~ 123 (366)
+|+.
T Consensus 376 Dlsv 379 (440)
T KOG0302|consen 376 DLSV 379 (440)
T ss_pred Eeec
Confidence 9964
No 23
>KOG0283|consensus
Probab=72.56 E-value=43 Score=36.59 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=63.1
Q ss_pred eeEEeEEe---cceEEEeecceeEEEEecCCCceE----------EeecCCceEEEEEecCCC--eEEEEECCCCeEEEE
Q psy15182 55 EILCAALW---GVNLLIGTETGLMLLDRSGQGKVY----------QLVNRRRFQQMEVLEGQN--ILVTISGKRNRVRVF 119 (366)
Q Consensus 55 ~I~Caa~w---g~~LllGTeeGlyll~~~~~~~~~----------~l~~~k~v~Ql~Vle~~~--lLi~lsGk~~~L~v~ 119 (366)
++.-|+.| |+..+|||-.|...++.....++. |-...++|+-++..+... +|++- .|.+||+|
T Consensus 452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~ 529 (712)
T KOG0283|consen 452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--NDSRIRIY 529 (712)
T ss_pred hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec--CCCceEEE
Confidence 55555555 777999999999998863211111 111123699999986665 66655 59999999
Q ss_pred Ec--hhhhccccccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecC
Q psy15182 120 YL--SWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAP 179 (366)
Q Consensus 120 ~L--~~L~~~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~ 179 (366)
++ ..|.. |=||+..... .+.+--..+ .+++++|- .--.+|-|+.
T Consensus 530 d~~~~~lv~----------KfKG~~n~~S----Q~~Asfs~D-gk~IVs~s-eDs~VYiW~~ 575 (712)
T KOG0283|consen 530 DGRDKDLVH----------KFKGFRNTSS----QISASFSSD-GKHIVSAS-EDSWVYIWKN 575 (712)
T ss_pred eccchhhhh----------hhcccccCCc----ceeeeEccC-CCEEEEee-cCceEEEEeC
Confidence 99 44432 2234322111 011100113 36777777 5668899984
No 24
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=68.97 E-value=92 Score=28.36 Aligned_cols=223 Identities=13% Similarity=0.134 Sum_probs=104.4
Q ss_pred ceeEEEEecCCCceEEeec-CCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccccccCCcceeeeeeeEeecCCCc
Q psy15182 72 TGLMLLDRSGQGKVYQLVN-RRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGA 150 (366)
Q Consensus 72 eGlyll~~~~~~~~~~l~~-~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~~~~l~k~kg~~~v~~~kgc 150 (366)
..+++.+... ++..+.+. ...+..+.+-++-+.+++..+.++.|++|++..... .. .++ ...+.
T Consensus 11 ~~v~~~d~~t-~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~---~~~---------~~~~~ 75 (300)
T TIGR03866 11 NTISVIDTAT-LEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IG---TLP---------SGPDP 75 (300)
T ss_pred CEEEEEECCC-CceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EE---ecc---------CCCCc
Confidence 3456666532 23334333 335677888888777777777889999999754321 00 000 00112
Q ss_pred eEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeeecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCc
Q psy15182 151 VHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAM 230 (366)
Q Consensus 151 ~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~ 230 (366)
..++. ......++++-...=.++.|+.+. ...++.+. ....|..+.+. ..+..+.++-........+|++++.
T Consensus 76 ~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~---~~~~~~~~-~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 76 ELFAL--HPNGKILYIANEDDNLVTVIDIET---RKVLAEIP-VGVEPEGMAVS-PDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred cEEEE--CCCCCEEEEEcCCCCeEEEEECCC---CeEEeEee-CCCCcceEEEC-CCCCEEEEEecCCCeEEEEeCCCCe
Confidence 22221 122234444433211455565432 12333432 33334433322 1234444443312235567887765
Q ss_pred eEEeecCCCCCCCCcceEEEEecCCCCceEEEEE--cceEEEEeCC-CceeeeeeeeeCC------CCcEEEEccCC--e
Q psy15182 231 VYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCY--DNEGVYVNTY-GKVSKNILLQWGE------MPTSVAYIGTG--Q 299 (366)
Q Consensus 231 ~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy--~~~~vfVn~~-G~~sr~~~l~W~~------~P~sva~~~~P--Y 299 (366)
....... ...+..+. +.. ++..+++.- +......|.. |+..+.+.+.+.+ .|.++++ +.. +
T Consensus 149 ~~~~~~~-----~~~~~~~~-~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~ 220 (300)
T TIGR03866 149 IVDNVLV-----DQRPRFAE-FTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL-TKDGKT 220 (300)
T ss_pred EEEEEEc-----CCCccEEE-ECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE-CCCCCE
Confidence 5432211 11233322 222 223343432 3444445654 3333444433322 3566776 432 3
Q ss_pred E-EEE-eCCeEEEEEccCCCEEEEEec
Q psy15182 300 I-MGW-GNKAIEIRSVETGHLDGVFMH 324 (366)
Q Consensus 300 i-l~f-~~~~IEIR~v~tg~Lvq~i~~ 324 (366)
+ ++. ..+.|.|.+++++++++.+.+
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~~~ 247 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYLLV 247 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEe
Confidence 2 333 356799999999998877653
No 25
>KOG0306|consensus
Probab=63.02 E-value=1.3e+02 Score=33.17 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=44.3
Q ss_pred cceEEEeecceeEEE-EecCCCceEEeecCC-ceEEEEEecCCCeEEEEECCCCeEEEEEchh
Q psy15182 63 GVNLLIGTETGLMLL-DRSGQGKVYQLVNRR-RFQQMEVLEGQNILVTISGKRNRVRVFYLSW 123 (366)
Q Consensus 63 g~~LllGTeeGlyll-~~~~~~~~~~l~~~k-~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~ 123 (366)
|..|+=|..+|--++ |.-++..++++-+.+ .|+|+..+-+.++||+. |||+.+.+|+|+.
T Consensus 119 G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~-sKDs~iK~WdL~t 180 (888)
T KOG0306|consen 119 GTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSV-SKDSMIKFWDLET 180 (888)
T ss_pred CceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEe-ccCceEEEEeccc
Confidence 455777766665544 444555567777744 89999999888888887 5999999999954
No 26
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=60.54 E-value=98 Score=25.90 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=42.0
Q ss_pred eeEEeEEec---ce-EEEeecceeEEEEecCCCceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEc
Q psy15182 55 EILCAALWG---VN-LLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYL 121 (366)
Q Consensus 55 ~I~Caa~wg---~~-LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L 121 (366)
.-+|...++ ++ |++|||+.--.+...++ -+..+-...+|+.|..+......-.+. ++.+-+|+-
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-~~~Ei~e~~~v~~L~~~~~~~F~Y~l~--NGTVGvY~~ 70 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSDDFEIRVFKGDE-IVAEITETDKVTSLCSLGGGRFAYALA--NGTVGVYDR 70 (111)
T ss_pred eEEEEEecCCCCcceEEEecCCcEEEEEeCCc-EEEEEecccceEEEEEcCCCEEEEEec--CCEEEEEeC
Confidence 346666663 35 99999998888875432 223333334688888887766655664 777777753
No 27
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=58.75 E-value=57 Score=33.55 Aligned_cols=73 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred EeeecCCceeEEeEEecc------e----EEEeecceeEEEEecCCCceEEeecCCceEEEEEe---cCCCeEEEEECCC
Q psy15182 47 KYKKKFGSEILCAALWGV------N----LLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVL---EGQNILVTISGKR 113 (366)
Q Consensus 47 ~~~k~f~~~I~Caa~wg~------~----LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vl---e~~~lLi~lsGk~ 113 (366)
+|.|++-..-.|..+|.. + ++|||++|..+++++.+-.+.--..-.+| .|.+- .-.+++++|+ .+
T Consensus 274 ~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls-~~ 351 (418)
T PF14727_consen 274 RFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLS-DE 351 (418)
T ss_pred EEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCE-EEEecccCCCCceEEEEc-CC
Q ss_pred CeEEEEEc
Q psy15182 114 NRVRVFYL 121 (366)
Q Consensus 114 ~~L~v~~L 121 (366)
++|.+.+|
T Consensus 352 G~L~v~YL 359 (418)
T PF14727_consen 352 GQLSVSYL 359 (418)
T ss_pred CcEEEEEe
No 28
>KOG2114|consensus
Probab=58.50 E-value=3.1e+02 Score=30.84 Aligned_cols=251 Identities=14% Similarity=0.180 Sum_probs=120.7
Q ss_pred eeEEeEEecceEEEeecce-eEEEEecCCC-ceEEeecCCceEEEEEecCCCeEEEEECC---CC-eEEEEEchhhhccc
Q psy15182 55 EILCAALWGVNLLIGTETG-LMLLDRSGQG-KVYQLVNRRRFQQMEVLEGQNILVTISGK---RN-RVRVFYLSWLKSKI 128 (366)
Q Consensus 55 ~I~Caa~wg~~LllGTeeG-lyll~~~~~~-~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk---~~-~L~v~~L~~L~~~~ 128 (366)
.|.|..+=+..+++||-+| ++.++++-+- .-.+..+.+-|++|+++.+.+.|+++..- +. .|.+|+|+-.+..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n- 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN- 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC-
Confidence 7888877677799999876 5555543211 11356666669999999999999988422 33 7999999887532
Q ss_pred cccCCcceee--eeeeEeecCCCceEEEEEEEcCeEEEEEEECCc-EEEEEecCCCccccceeeeecccCCCceEEEEee
Q psy15182 129 LKMDGQVERR--NGWINVGDLQGAVHFRIVKYERIKFLVIALKDS-IEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTV 205 (366)
Q Consensus 129 ~~~~~~l~k~--kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~-i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v 205 (366)
+.|..-.. .--++.+ +.--....+...+..++++|..-+. |.+|+-+. .+++=.+.+ +..-...|.+ -|..
T Consensus 106 --~sP~c~~~~ri~~~~np-~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi-~RDrgsr~~-~~~~~~~pIT-gL~~ 179 (933)
T KOG2114|consen 106 --NSPQCLYEHRIFTIKNP-TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI-LRDRGSRQD-YSHRGKEPIT-GLAL 179 (933)
T ss_pred --CCcceeeeeeeeccCCC-CCCCcceEEEEEccccEEEEEecCcEEEEEcCcc-hhcccccee-eeccCCCCce-eeEE
Confidence 11211100 0000011 0001111233444555666666665 45555431 111101111 1111122311 1222
Q ss_pred ecCCeEEEEEecCCceEEEECCCCce--EEeecCCCCCCCCcceEEEEecCCCCceEEEEEcceEEEEeCCCceeeeeee
Q psy15182 206 EEGTRLKVIYGSADGFHAVDLDSAMV--YDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILL 283 (366)
Q Consensus 206 ~~~~~l~V~~g~~~gF~~idl~~~~~--~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G~~sr~~~l 283 (366)
-......+-+.....-..+.+. |.. ..+++.. +....|.. ..+ ...+|..|-.++-.|-+..|+.- .+.+
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~----G~~lnCss-~~~-~t~qfIca~~e~l~fY~sd~~~~-cfaf 251 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNN----GISLNCSS-FSD-GTYQFICAGSEFLYFYDSDGRGP-CFAF 251 (933)
T ss_pred ecCCceeEEEEecceeEEEEec-CCCcceeeeccC----Cccceeee-cCC-CCccEEEecCceEEEEcCCCcce-eeee
Confidence 1122232223344666677776 333 2223221 22222332 221 22468888888888888777532 2222
Q ss_pred eeCCCCcEEEEccCCeEEEEeC-CeEEEEEccCCCEEEE
Q psy15182 284 QWGEMPTSVAYIGTGQIMGWGN-KAIEIRSVETGHLDGV 321 (366)
Q Consensus 284 ~W~~~P~sva~~~~PYil~f~~-~~IEIR~v~tg~Lvq~ 321 (366)
.=++.=...+. ++.|++...+ ...+..+..+...-+.
T Consensus 252 ~~g~kk~~~~~-~~g~~L~v~~~~~~~~~s~s~ss~~~i 289 (933)
T KOG2114|consen 252 EVGEKKEMLVF-SFGLLLCVTTDKGTENTSLSNSSSNRI 289 (933)
T ss_pred cCCCeEEEEEE-ecCEEEEEEccCCCCCcccCccchhhe
Confidence 21222223334 5677776665 5555544444443333
No 29
>KOG0315|consensus
Probab=57.80 E-value=1.9e+02 Score=28.06 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=49.9
Q ss_pred CCceeEEeEEecc--eEEEeecceeEEE-EecCCCceEEeecC--CceEEEEEecCCCeEEEEECCCCeEEEEEchh
Q psy15182 52 FGSEILCAALWGV--NLLIGTETGLMLL-DRSGQGKVYQLVNR--RRFQQMEVLEGQNILVTISGKRNRVRVFYLSW 123 (366)
Q Consensus 52 f~~~I~Caa~wg~--~LllGTeeGlyll-~~~~~~~~~~l~~~--k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~ 123 (366)
++..|+|..+--+ .|+.|+.+|.-.+ |+....-..+++.- ..|+.+.|.++-.+|+.+-.| ++.|+|+|-.
T Consensus 123 ~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-G~cyvW~l~~ 198 (311)
T KOG0315|consen 123 HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-GNCYVWRLLN 198 (311)
T ss_pred CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC-ccEEEEEccC
Confidence 5688999887743 3999999986544 54221111233322 479999999999999998644 5799999854
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=57.71 E-value=1.3e+02 Score=26.19 Aligned_cols=200 Identities=10% Similarity=0.083 Sum_probs=96.2
Q ss_pred CCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccccccCCcceeeeeeeEeecCCCceEEEEEEE-cCeEEEEEEEC
Q psy15182 91 RRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKY-ERIKFLVIALK 169 (366)
Q Consensus 91 ~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~-~~~~~LcvA~k 169 (366)
+.+|+.+...++.++|++- +.++.+++|++..-.. .....+ ..... ..+... .+..++++...
T Consensus 9 ~~~i~~~~~~~~~~~l~~~-~~~g~i~i~~~~~~~~--------~~~~~~-----~~~~i--~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATG-SGDGTIKVWDLETGEL--------LRTLKG-----HTGPV--RDVAASADGTYLASGSSD 72 (289)
T ss_pred CCCEEEEEEcCCCCEEEEe-ecCcEEEEEEeeCCCc--------EEEEec-----CCcce--eEEEECCCCCEEEEEcCC
Confidence 3579999999887776655 4688999999854210 000000 00001 011111 22233343445
Q ss_pred CcEEEEEecCCCccccceeeeecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEE
Q psy15182 170 DSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCI 249 (366)
Q Consensus 170 ~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I 249 (366)
..|.+|..... ...+++..-......+.+ ....++.++-+......++|++++.....+.. + .....++
T Consensus 73 ~~i~i~~~~~~-----~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~---~~~i~~~ 141 (289)
T cd00200 73 KTIRLWDLETG-----ECVRTLTGHTSYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-H---TDWVNSV 141 (289)
T ss_pred CeEEEEEcCcc-----cceEEEeccCCcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcEEEEEecc-C---CCcEEEE
Confidence 56777665432 122233211112222221 12223333222246677889886655544421 1 1111222
Q ss_pred EEecCCCCceEEEEE--cceEEEEeCC-CceeeeeeeeeCCCCcEEEEccCC--e-EEEEeCCeEEEEEccCCCEEEEE
Q psy15182 250 VALPNSNGMQLLLCY--DNEGVYVNTY-GKVSKNILLQWGEMPTSVAYIGTG--Q-IMGWGNKAIEIRSVETGHLDGVF 322 (366)
Q Consensus 250 ~~l~~~~~~E~LLcy--~~~~vfVn~~-G~~sr~~~l~W~~~P~sva~~~~P--Y-il~f~~~~IEIR~v~tg~Lvq~i 322 (366)
. ...+ ..++++- +......|.. ++....+. .-.+...++++ ... + +++-....|.+.++.++..++.+
T Consensus 142 ~-~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 A-FSPD--GTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAF-SPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred E-EcCc--CCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEE-CCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 2 2221 4555554 4444444554 44333332 11224566777 444 3 34444688999999999888887
No 31
>KOG2280|consensus
Probab=57.55 E-value=2.8e+02 Score=30.78 Aligned_cols=75 Identities=9% Similarity=0.042 Sum_probs=45.9
Q ss_pred ceEEEEEcceEEE----EeCC--------CceeeeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEecc
Q psy15182 258 MQLLLCYDNEGVY----VNTY--------GKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHK 325 (366)
Q Consensus 258 ~E~LLcy~~~~vf----Vn~~--------G~~sr~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k 325 (366)
..+|=-|++.|-. +|.. +.......+.|=+++ ++++..+.+|+..++.+-+|--..+-...=+..
T Consensus 228 ~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd-aVvl~~e~~l~lvgp~gd~V~f~yd~t~~l~~E-- 304 (829)
T KOG2280|consen 228 RRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND-AVVLSWEVNLMLVGPPGDSVQFYYDETAILSAE-- 304 (829)
T ss_pred cceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC-ceEEEEeeeEEEEcCCCCccccccCCCceeeec--
Confidence 4677777766643 2321 223334478899999 444447889999999777766655544432334
Q ss_pred CCCceeEEEEe
Q psy15182 326 KSQRLKFLCER 336 (366)
Q Consensus 326 ~~~~lr~L~~~ 336 (366)
...+|++++.
T Consensus 305 -~DGVRI~t~t 314 (829)
T KOG2280|consen 305 -VDGVRIITST 314 (829)
T ss_pred -cCeeEEeccc
Confidence 5667766553
No 32
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=56.77 E-value=1.5e+02 Score=28.57 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred CceeEEeEEecceEEEee-cceeEEEEecCCCceEEeecC----CceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcc
Q psy15182 53 GSEILCAALWGVNLLIGT-ETGLMLLDRSGQGKVYQLVNR----RRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSK 127 (366)
Q Consensus 53 ~~~I~Caa~wg~~LllGT-eeGlyll~~~~~~~~~~l~~~----k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~ 127 (366)
+..+.|...+++.+++|. ..|++++..+.+..-..++++ +.++.++.+.+.+ .++.+.+++.|+++..+.....
T Consensus 129 ~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~ 207 (321)
T PF03178_consen 129 PFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPN 207 (321)
T ss_dssp SSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SS
T ss_pred eEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcc
Q ss_pred ccccCCcceeeeeee
Q psy15182 128 ILKMDGQVERRNGWI 142 (366)
Q Consensus 128 ~~~~~~~l~k~kg~~ 142 (366)
....++++.....++
T Consensus 208 ~~~~~~~L~~~~~f~ 222 (321)
T PF03178_consen 208 SRDGDPKLERISSFH 222 (321)
T ss_dssp TTTTTTBEEEEEEEE
T ss_pred cccccccceeEEEEE
No 33
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=56.48 E-value=45 Score=33.86 Aligned_cols=158 Identities=23% Similarity=0.277 Sum_probs=73.9
Q ss_pred eEEeEEe------cceEEEeec--ceeEEEEecCCCceEEeecCCceEEEEEecCCC-----e-EEEEECCC---CeEEE
Q psy15182 56 ILCAALW------GVNLLIGTE--TGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQN-----I-LVTISGKR---NRVRV 118 (366)
Q Consensus 56 I~Caa~w------g~~LllGTe--eGlyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~-----l-Li~lsGk~---~~L~v 118 (366)
.-=-|.| .+.|+|||+ .||++.+++|+ ..+-+...++--++|..... + |++-+.++ +.|++
T Consensus 54 ADDPAIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk--~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 54 ADDPAIWVNPADPAKSLIIGTDKKGGLYVYDLDGK--ELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp EEEEEEE--SS-GGG-EEEEEETTTEEEEEETTS---EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEE
T ss_pred cCCCcEecCCCCcccceEEEEeCCCCEEEEcCCCc--EEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEE
Confidence 4444578 345999996 89999999764 44555555677778864322 2 23334343 58999
Q ss_pred EEchhhhccccc--cCCcceeeeeeeEeecCCCceEEEEEEE--cCeEEEEEEECCc-EEEEEecC--CCccccceeeee
Q psy15182 119 FYLSWLKSKILK--MDGQVERRNGWINVGDLQGAVHFRIVKY--ERIKFLVIALKDS-IEIYAWAP--KPYHKFMAFKSF 191 (366)
Q Consensus 119 ~~L~~L~~~~~~--~~~~l~k~kg~~~v~~~kgc~~f~v~~~--~~~~~LcvA~k~~-i~iy~w~~--~p~~kF~~~Kef 191 (366)
|.++.-.. .+. .++..+-. .+...-.=+|+.+. .+..+..+.-|.. +.-|+... +..-....+|+|
T Consensus 132 f~id~~~g-~L~~v~~~~~p~~------~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 132 FRIDPDTG-ELTDVTDPAAPIA------TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp EEEETTTT-EEEE-CBTTC-EE-------SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred EEecCCCC-cceEcCCCCcccc------cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 99874211 111 11111100 11111122333332 2345555555654 45454432 222234578898
Q ss_pred cccCCCceEEEEeee--cCCeEEEEEecCCceEEEECC
Q psy15182 192 GELGYRPLLVDLTVE--EGTRLKVIYGSADGFHAVDLD 227 (366)
Q Consensus 192 ~~lp~~p~~v~l~v~--~~~~l~V~~g~~~gF~~idl~ 227 (366)
. ++..+. -++. +...|-|+=- ..|-+.++.+
T Consensus 205 ~-~~sQ~E---GCVVDDe~g~LYvgEE-~~GIW~y~Ae 237 (381)
T PF02333_consen 205 K-VGSQPE---GCVVDDETGRLYVGEE-DVGIWRYDAE 237 (381)
T ss_dssp E--SS-EE---EEEEETTTTEEEEEET-TTEEEEEESS
T ss_pred c-CCCcce---EEEEecccCCEEEecC-ccEEEEEecC
Confidence 4 666553 2222 2334554432 3456677776
No 34
>KOG0646|consensus
Probab=56.28 E-value=2.5e+02 Score=29.15 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=51.8
Q ss_pred cCCceeEEeEEe--cceEEEeecce-eEEEEecCCCceEEeecC--CceEEEEEecCCCeEEEEECCCCeEEEEEchhhh
Q psy15182 51 KFGSEILCAALW--GVNLLIGTETG-LMLLDRSGQGKVYQLVNR--RRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLK 125 (366)
Q Consensus 51 ~f~~~I~Caa~w--g~~LllGTeeG-lyll~~~~~~~~~~l~~~--k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~ 125 (366)
..|..++|.+.. |..|+-||+.| +|+.+.+ .+.+..++++ ..|+-|... +.+-++.-+|||+.|++|.|..|.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeec
Confidence 347889999887 45588887755 7888875 3444444444 256666554 455666667899999999998876
Q ss_pred cc
Q psy15182 126 SK 127 (366)
Q Consensus 126 ~~ 127 (366)
+.
T Consensus 157 ~a 158 (476)
T KOG0646|consen 157 SA 158 (476)
T ss_pred cc
Confidence 53
No 35
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=55.05 E-value=72 Score=26.69 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=27.1
Q ss_pred eeeeeeeeeCCCCcEEEEccCC------eEEEEeCCeEEEE
Q psy15182 277 VSKNILLQWGEMPTSVAYIGTG------QIMGWGNKAIEIR 311 (366)
Q Consensus 277 ~sr~~~l~W~~~P~sva~~~~P------Yil~f~~~~IEIR 311 (366)
..|.|.++=...|.+++..... -|+||.+..||+|
T Consensus 71 ~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~R 111 (111)
T PF14783_consen 71 SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEVR 111 (111)
T ss_pred cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEeC
Confidence 4577777767778888765555 5999999999987
No 36
>KOG0291|consensus
Probab=54.51 E-value=3.4e+02 Score=30.14 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=41.8
Q ss_pred CceeEEeEEe-cce-EEEeecceeEEEEe-cCCCceEEeecC--CceEEEEEecCCCeEEEEECCCCeEEEEEc
Q psy15182 53 GSEILCAALW-GVN-LLIGTETGLMLLDR-SGQGKVYQLVNR--RRFQQMEVLEGQNILVTISGKRNRVRVFYL 121 (366)
Q Consensus 53 ~~~I~Caa~w-g~~-LllGTeeGlyll~~-~~~~~~~~l~~~--k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L 121 (366)
+.++.||+-- +-+ |++|=.+|+|.++. .+. .+....+. -+|.-+.+-+.=+-+..=++|-++|-||.+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f-~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF-NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCc-eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 3889999866 455 89999999997764 432 22222222 245555443333333333567789999987
No 37
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=49.78 E-value=2e+02 Score=26.06 Aligned_cols=234 Identities=15% Similarity=0.146 Sum_probs=110.2
Q ss_pred eEEE-eecce-eEEEEecCCCceEEeec-CCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccccccCCcceeeeee
Q psy15182 65 NLLI-GTETG-LMLLDRSGQGKVYQLVN-RRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGW 141 (366)
Q Consensus 65 ~Lll-GTeeG-lyll~~~~~~~~~~l~~-~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~~~~l~k~kg~ 141 (366)
.|++ +.++| +++.+.. .++..+.+. ...+..+.+.++-+.+.+-.+.++.|++|++..... .. .++
T Consensus 44 ~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~---~~~----- 112 (300)
T TIGR03866 44 LLYVCASDSDTIQVIDLA-TGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV--LA---EIP----- 112 (300)
T ss_pred EEEEEECCCCeEEEEECC-CCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--Ee---Eee-----
Confidence 3533 44554 5555643 223333222 234667777788787766666788999999864220 00 000
Q ss_pred eEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeeecccCCCceEEEEeeecCCeEEEEEecCCce
Q psy15182 142 INVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGF 221 (366)
Q Consensus 142 ~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF 221 (366)
. +.....+.......+++++....-.++.|..+.. ...+.+ ..+..|..+.+. ..+..+.+.-......
T Consensus 113 --~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~~~~s-~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 113 --V----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY---EIVDNV-LVDQRPRFAEFT-ADGKELWVSSEIGGTV 181 (300)
T ss_pred --C----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC---eEEEEE-EcCCCccEEEEC-CCCCEEEEEcCCCCEE
Confidence 0 0000112222233445555544333444543321 122232 234455444322 2344454432223567
Q ss_pred EEEECCCCceEEeecCC--C-CCCCCcceEEEEecCCCCceEEEEE--cceEEEEeCC-CceeeeeeeeeCCCCcEEEEc
Q psy15182 222 HAVDLDSAMVYDIYLPK--H-IQGPICPHCIVALPNSNGMQLLLCY--DNEGVYVNTY-GKVSKNILLQWGEMPTSVAYI 295 (366)
Q Consensus 222 ~~idl~~~~~~~L~~p~--~-~~~~~~p~~I~~l~~~~~~E~LLcy--~~~~vfVn~~-G~~sr~~~l~W~~~P~sva~~ 295 (366)
.++|++++....-+... . ......|..+. +..+ +..+++.. ++.-..+|.. |+..+... =...|.++++
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~s~d-g~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~- 256 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIK-LTKD-GKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAF- 256 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceE-ECCC-CCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEE-
Confidence 89999987654332111 0 11122333332 2222 23333332 2222223544 33333221 1345777777
Q ss_pred cCC--eEEEE--eCCeEEEEEccCCCEEEEEecc
Q psy15182 296 GTG--QIMGW--GNKAIEIRSVETGHLDGVFMHK 325 (366)
Q Consensus 296 ~~P--Yil~f--~~~~IEIR~v~tg~Lvq~i~~k 325 (366)
+.. +|++= ..+.|-|.++++++.++++...
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 332 45432 2578999999999999988743
No 38
>KOG2048|consensus
Probab=48.33 E-value=4e+02 Score=29.07 Aligned_cols=259 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred ceeEEeEEecce--EEEeecceeEEEEe-cCC-----CceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhh
Q psy15182 54 SEILCAALWGVN--LLIGTETGLMLLDR-SGQ-----GKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLK 125 (366)
Q Consensus 54 ~~I~Caa~wg~~--LllGTeeGlyll~~-~~~-----~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~ 125 (366)
.+|+|.+.=+++ ++.++-+|--.-+. .+. ..-.+.+....|+-|+|+|. .+.-.|+|..|++.++..+.
T Consensus 246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFK 322 (691)
T ss_pred cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccccC
Q ss_pred ccccccCCcceeeeeee-------------------EeecC------CCceEEEEEEEcCeE-----------EEEEEEC
Q psy15182 126 SKILKMDGQVERRNGWI-------------------NVGDL------QGAVHFRIVKYERIK-----------FLVIALK 169 (366)
Q Consensus 126 ~~~~~~~~~l~k~kg~~-------------------~v~~~------kgc~~f~v~~~~~~~-----------~LcvA~k 169 (366)
....+.....+++.-.. .++.. .--+++++...+... .+|+.+-
T Consensus 323 ~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~ 402 (691)
T KOG2048|consen 323 NMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV 402 (691)
T ss_pred chhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec
Q ss_pred CcEEEEEecCCCccccceeeeecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEE
Q psy15182 170 DSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCI 249 (366)
Q Consensus 170 ~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I 249 (366)
+.+.+|...+.|.-+-...+.....--....+.+++ .++++.++=......+.+++++.+-+++. +.++..+-..|
T Consensus 403 ~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~fti-d~~k~~~~s~~~~~le~~el~~ps~kel~---~~~~~~~~~~I 478 (691)
T KOG2048|consen 403 SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTI-DKNKLFLVSKNIFSLEEFELETPSFKELK---SIQSQAKCPSI 478 (691)
T ss_pred cceEEEEeccCcceeEEEeccchhhhccceeeEEEe-cCceEEEEecccceeEEEEecCcchhhhh---ccccccCCCcc
Q ss_pred EEecCCCCceEEEEEcceEEE--EeCCCceeeeeeeeeCCCCcEEEEcc-CCe---EEEEeCCeEEEEEccCCCEEE
Q psy15182 250 VALPNSNGMQLLLCYDNEGVY--VNTYGKVSKNILLQWGEMPTSVAYIG-TGQ---IMGWGNKAIEIRSVETGHLDG 320 (366)
Q Consensus 250 ~~l~~~~~~E~LLcy~~~~vf--Vn~~G~~sr~~~l~W~~~P~sva~~~-~PY---il~f~~~~IEIR~v~tg~Lvq 320 (366)
..+--.+.++++-.-+..|.. .|+++...+.....-+..-+++++ + +.+ +++..++-+-=.+++..++.+
T Consensus 479 ~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~-~~~~~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 479 SRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAF-SPFVRNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred eeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeec-cccccCcEEEEecCCeEEEEecchhhhhh
No 39
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=46.99 E-value=39 Score=23.60 Aligned_cols=30 Identities=33% Similarity=0.617 Sum_probs=22.3
Q ss_pred eecCCceeEEeEEecc---eEEEeecceeEEEEe
Q psy15182 49 KKKFGSEILCAALWGV---NLLIGTETGLMLLDR 79 (366)
Q Consensus 49 ~k~f~~~I~Caa~wg~---~LllGTeeGlyll~~ 79 (366)
.|..+.+|.|+ .|.. =|++||++|--.++|
T Consensus 7 ~k~l~~~v~~~-~w~P~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 7 EKNLPSRVSCM-SWCPTMDLIALGTEDGEVLVYR 39 (47)
T ss_pred ccCCCCcEEEE-EECCCCCEEEEEECCCeEEEEE
Confidence 34556778865 5753 399999999888887
No 40
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=46.71 E-value=71 Score=19.97 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCeEEEEECCCCeEEEEE
Q psy15182 92 RRFQQMEVLEGQNILVTISGKRNRVRVFY 120 (366)
Q Consensus 92 k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~ 120 (366)
..|..|..-++.+.+++- |.|+.|++|+
T Consensus 12 ~~i~~i~~~~~~~~~~s~-~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASG-SSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEE-ETTSEEEEEE
T ss_pred CcEEEEEEecccccceee-CCCCEEEEEC
Confidence 479999999987776665 4899999986
No 41
>KOG1272|consensus
Probab=45.71 E-value=72 Score=33.18 Aligned_cols=72 Identities=11% Similarity=0.234 Sum_probs=49.6
Q ss_pred ceeEEeEEecceEEEeecceeEEEEec-CCCceEEeec-CCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhc
Q psy15182 54 SEILCAALWGVNLLIGTETGLMLLDRS-GQGKVYQLVN-RRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKS 126 (366)
Q Consensus 54 ~~I~Caa~wg~~LllGTeeGlyll~~~-~~~~~~~l~~-~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~ 126 (366)
..++|--+|.--+-+|--.|.-.|=.. .+..+.++.- +.+|.-|+|-+ .+-.++-+|.|+.+.+|||..+.+
T Consensus 254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred cchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccc
Confidence 455566566444777878888777642 2223455554 45899999864 566666689999999999988763
No 42
>KOG0305|consensus
Probab=43.93 E-value=4.1e+02 Score=27.97 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=41.1
Q ss_pred EEeEEe---cceEEEeecceeEEEEecCCCceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhh
Q psy15182 57 LCAALW---GVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLK 125 (366)
Q Consensus 57 ~Caa~w---g~~LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~ 125 (366)
.|...| |..|.|||..|.+.+..-.+.+-.+-+.-.-..-+.+++=.+..++.-.+++.+..+++..-.
T Consensus 220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred eEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch
Confidence 444566 567999999998877632111111211211234455665555666666689999999986644
No 43
>KOG0319|consensus
Probab=39.14 E-value=3.2e+02 Score=30.09 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=46.3
Q ss_pred CceeEEeEEec---ceEEEeecceeEEEEecCCCceEEeecC--CceEEEEEecCCCeEEEEECCCCeEEEEEc
Q psy15182 53 GSEILCAALWG---VNLLIGTETGLMLLDRSGQGKVYQLVNR--RRFQQMEVLEGQNILVTISGKRNRVRVFYL 121 (366)
Q Consensus 53 ~~~I~Caa~wg---~~LllGTeeGlyll~~~~~~~~~~l~~~--k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L 121 (366)
+.+|.-.-.|| +.|+|+|..+-+.++. -++.--+++.- .-|-.++|- +.+.|++-.+||+.+++|.|
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~-~~~~~c~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYT-LPTSYCQIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEe-cCCCceEEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEe
Confidence 57777777888 4599999999998884 12111233322 256677744 45667776779999999998
No 44
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=38.45 E-value=2e+02 Score=27.61 Aligned_cols=26 Identities=42% Similarity=0.615 Sum_probs=19.3
Q ss_pred ceeEEeEEe-----c----ceEEEeeccee-EEEEe
Q psy15182 54 SEILCAALW-----G----VNLLIGTETGL-MLLDR 79 (366)
Q Consensus 54 ~~I~Caa~w-----g----~~LllGTeeGl-yll~~ 79 (366)
..|.|.+.. + ..|+||||+|. |++|-
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~ 212 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDP 212 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECc
Confidence 688999877 2 23999999996 55553
No 45
>KOG2110|consensus
Probab=37.25 E-value=4.6e+02 Score=26.62 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=70.7
Q ss_pred EEeeecCCeEEEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEcceEEEEeC-CCcee--
Q psy15182 202 DLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNT-YGKVS-- 278 (366)
Q Consensus 202 ~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~~~~vfVn~-~G~~s-- 278 (366)
....+.++..++++|+.+||.+++.+.... .+ ..+ .-...|+ |.|-. ...-++|+. ++|+.
T Consensus 9 ~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~-~~~----~~~~~Iv--------EmLFS-SSLvaiV~~~qpr~Lkv 72 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CF-SKD----TEGVSIV--------EMLFS-SSLVAIVSIKQPRKLKV 72 (391)
T ss_pred eeeeeccceeEEEccCCCceeEEecCchHH--hh-ccc----CCCeEEE--------Eeecc-cceeEEEecCCCceEEE
Confidence 344466777788889999999999873322 11 101 1112232 21111 123334443 33322
Q ss_pred -------eeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEeccCCCcee
Q psy15182 279 -------KNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLK 331 (366)
Q Consensus 279 -------r~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k~~~~lr 331 (366)
.-.++.++....+|.. .-.-+++-.+..|-|.++.+..+.++|+.- .++.+
T Consensus 73 ~~~Kk~~~ICe~~fpt~IL~Vrm-Nr~RLvV~Lee~IyIydI~~MklLhTI~t~-~~n~~ 130 (391)
T KOG2110|consen 73 VHFKKKTTICEIFFPTSILAVRM-NRKRLVVCLEESIYIYDIKDMKLLHTIETT-PPNPK 130 (391)
T ss_pred EEcccCceEEEEecCCceEEEEE-ccceEEEEEcccEEEEecccceeehhhhcc-CCCcc
Confidence 2336778888888888 888999999999999999999999999732 24444
No 46
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.20 E-value=5.5e+02 Score=27.46 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=38.7
Q ss_pred ceeEEeEEe-c-ceEEEeecceeEEEEecCCCceEEeecCC-ceEEEEEecCCCeEEEEECCCCeEEEEEc
Q psy15182 54 SEILCAALW-G-VNLLIGTETGLMLLDRSGQGKVYQLVNRR-RFQQMEVLEGQNILVTISGKRNRVRVFYL 121 (366)
Q Consensus 54 ~~I~Caa~w-g-~~LllGTeeGlyll~~~~~~~~~~l~~~k-~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L 121 (366)
.++.|.+.= . ++|++|+++|-..++... ..+.+..... ..+.+.--++-. ++++.+..+.|..||+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTT-RGVTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcC-CCeeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEe
Confidence 445554422 2 459999999999998542 2233332222 234444444444 4444556689999997
No 47
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.48 E-value=3.6e+02 Score=26.61 Aligned_cols=115 Identities=12% Similarity=0.150 Sum_probs=67.2
Q ss_pred EEeEEec--ce-EEEeecceeEEEEecCCCceEEeecCC---ceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccccc
Q psy15182 57 LCAALWG--VN-LLIGTETGLMLLDRSGQGKVYQLVNRR---RFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILK 130 (366)
Q Consensus 57 ~Caa~wg--~~-LllGTeeGlyll~~~~~~~~~~l~~~k---~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~~ 130 (366)
.++-.|+ .+ |+.=|+++--+++.+.++++.+-+.-. .---|+++. -|..++-..|++.|+.+.++.=..-+
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~-- 164 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVI-- 164 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEE--
Confidence 5677884 34 888899999999987666665544433 344566774 45555556799999999985411000
Q ss_pred cCCcceeeeeeeEeec--CCCceEEEEEEEcCeEEEEEEECC-cEEEEEecC
Q psy15182 131 MDGQVERRNGWINVGD--LQGAVHFRIVKYERIKFLVIALKD-SIEIYAWAP 179 (366)
Q Consensus 131 ~~~~l~k~kg~~~v~~--~kgc~~f~v~~~~~~~~LcvA~k~-~i~iy~w~~ 179 (366)
+ .+.. .++++. .++|=+=-+.+......|.+|..+ -+.||+|..
T Consensus 165 -~---~~~~-~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 165 -S---AKVQ-KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred -e---ccce-EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 0 0000 122222 123434444444444556666655 488999974
No 48
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=33.79 E-value=98 Score=29.73 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=24.8
Q ss_pred ceEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccce
Q psy15182 150 AVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMA 187 (366)
Q Consensus 150 c~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~ 187 (366)
|++|.-....+...++||....|.+|.- -+||.||+.
T Consensus 69 ~sFy~d~~ep~~P~iAVA~G~~vyiYkN-lkP~yKftl 105 (257)
T PF14779_consen 69 VSFYMDEHEPRTPAIAVAAGPSVYIYKN-LKPFYKFTL 105 (257)
T ss_pred EEEeccCCCCCCCeEEEEeCCEEEEEec-ccceeeecC
Confidence 5555322223557899999999988874 468888653
No 49
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=33.41 E-value=1.2e+02 Score=21.09 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=24.0
Q ss_pred ceEEEEEecCCCeEEEEECCCCeEEEEEchh
Q psy15182 93 RFQQMEVLEGQNILVTISGKRNRVRVFYLSW 123 (366)
Q Consensus 93 ~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~ 123 (366)
+|+.+.--|..+|+.+.+ .++.|.+|++++
T Consensus 13 ~v~~~~w~P~mdLiA~~t-~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGT-EDGEVLVYRLNW 42 (47)
T ss_pred cEEEEEECCCCCEEEEEE-CCCeEEEEECCC
Confidence 588888889999776665 578999999965
No 50
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=32.35 E-value=3.7e+02 Score=24.06 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=35.1
Q ss_pred cceeEEEEecC-CCceEEeecCCceEEEEEecCCCeEEEEECC-CCeEEEEEch
Q psy15182 71 ETGLMLLDRSG-QGKVYQLVNRRRFQQMEVLEGQNILVTISGK-RNRVRVFYLS 122 (366)
Q Consensus 71 eeGlyll~~~~-~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk-~~~L~v~~L~ 122 (366)
+..+|.++..+ +.....+-...+|.++.--|.-+-++++.|. ++.+.+|++.
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~ 91 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK 91 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc
Confidence 36778886532 2122222233369999999988888888874 5689999985
No 51
>KOG1034|consensus
Probab=32.28 E-value=71 Score=31.87 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=40.3
Q ss_pred EEecceEEEeecce-eEEEEecCCC-----ceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEE
Q psy15182 60 ALWGVNLLIGTETG-LMLLDRSGQG-----KVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFY 120 (366)
Q Consensus 60 a~wg~~LllGTeeG-lyll~~~~~~-----~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~ 120 (366)
++|++.|++|-++| +|..|++... .+..-.+.+.|+|..+-++--+|+... -|..+..|+
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc-dd~~Vwrwd 381 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC-DDGTVWRWD 381 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe-CCCcEEEEE
Confidence 45567799998877 6777874321 123444556899999998888888775 345555554
No 52
>KOG0650|consensus
Probab=32.08 E-value=2.2e+02 Score=30.80 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=56.7
Q ss_pred CceEEEEEecCCCeEEEE--ECCCCeEEEEEchhhhccccccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEEC
Q psy15182 92 RRFQQMEVLEGQNILVTI--SGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALK 169 (366)
Q Consensus 92 k~v~Ql~Vle~~~lLi~l--sGk~~~L~v~~L~~L~~~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k 169 (366)
|+|.||+---.=.-|.+. .|-.+.+.+|.|+--.. .....|++| -.+ ++.=+....+|.||.+
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s-----Q~PF~kskG---------~vq-~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS-----QSPFRKSKG---------LVQ-RVKFHPSKPYLFVATQ 586 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEecccccc-----cCchhhcCC---------cee-EEEecCCCceEEEEec
Confidence 345555555444444433 23445777777754221 112233343 222 2222455689999999
Q ss_pred CcEEEEEecCCCccccceeeeecccCCCceEEE-Eee-ecCCeEEEEEecCCceEEEECC
Q psy15182 170 DSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVD-LTV-EEGTRLKVIYGSADGFHAVDLD 227 (366)
Q Consensus 170 ~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~-l~v-~~~~~l~V~~g~~~gF~~idl~ 227 (366)
++|.+|-.... + ..|++. .-+..++ |.+ ..|+++.+|=- -+.+--.||+
T Consensus 587 ~~vRiYdL~kq---e--lvKkL~---tg~kwiS~msihp~GDnli~gs~-d~k~~WfDld 637 (733)
T KOG0650|consen 587 RSVRIYDLSKQ---E--LVKKLL---TGSKWISSMSIHPNGDNLILGSY-DKKMCWFDLD 637 (733)
T ss_pred cceEEEehhHH---H--HHHHHh---cCCeeeeeeeecCCCCeEEEecC-CCeeEEEEcc
Confidence 99999987531 1 222321 1123333 222 24567655321 3566677877
No 53
>KOG0289|consensus
Probab=31.47 E-value=6.2e+02 Score=26.38 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=69.4
Q ss_pred ceeEEeEEecceEEE--eecceeEEEE-ecCCCceEEeecC-CceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcccc
Q psy15182 54 SEILCAALWGVNLLI--GTETGLMLLD-RSGQGKVYQLVNR-RRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKIL 129 (366)
Q Consensus 54 ~~I~Caa~wg~~Lll--GTeeGlyll~-~~~~~~~~~l~~~-k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~ 129 (366)
.++.|++..-+-|++ ||.+|+.-+. .+.+..+.+.-.. .+|+-|..- +.+--++..-.|..+.+|||.-+++-
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~-- 424 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNF-- 424 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehhhccc--
Confidence 347787776555555 4788987665 3434333332222 378888776 46666666556777999999877631
Q ss_pred ccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeeec
Q psy15182 130 KMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFG 192 (366)
Q Consensus 130 ~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~ 192 (366)
++ +.+.+-++..-+..+ ...++|.++ ...+.+|....+. -....++++.
T Consensus 425 ---kt-------~~l~~~~~v~s~~fD--~SGt~L~~~-g~~l~Vy~~~k~~-k~W~~~~~~~ 473 (506)
T KOG0289|consen 425 ---KT-------IQLDEKKEVNSLSFD--QSGTYLGIA-GSDLQVYICKKKT-KSWTEIKELA 473 (506)
T ss_pred ---ce-------eeccccccceeEEEc--CCCCeEEee-cceeEEEEEeccc-ccceeeehhh
Confidence 11 112222223323222 234788877 8889999876322 1223455553
No 54
>KOG2315|consensus
Probab=31.35 E-value=6.7e+02 Score=26.77 Aligned_cols=158 Identities=20% Similarity=0.290 Sum_probs=86.0
Q ss_pred CCceEEEEEEEcCeEEEEEEECC------cEEEEEecCCCccccceeeeecccCCCceEEEEeeec--CCeEEEEEec--
Q psy15182 148 QGAVHFRIVKYERIKFLVIALKD------SIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEE--GTRLKVIYGS-- 217 (366)
Q Consensus 148 kgc~~f~v~~~~~~~~LcvA~k~------~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~--~~~l~V~~g~-- 217 (366)
.|.+.|.+.......++||-++- .+.||.....-.|.-...|.|. ....|+|. |. +..|.|...+
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF----kadkvqm~-WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF----KADKVQMK-WNKLGTALLVLASTDV 240 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc----ccceeEEE-eccCCceEEEEEEEee
Confidence 34556665544334566766653 4888887533334444556663 22233332 32 2223222110
Q ss_pred ---------CCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEc----ceEEEEeCCCceeeeeeee
Q psy15182 218 ---------ADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYD----NEGVYVNTYGKVSKNILLQ 284 (366)
Q Consensus 218 ---------~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~----~~~vfVn~~G~~sr~~~l~ 284 (366)
...-|+++.+ |+.-.+-.+ .....|.+.= +-++.||.+||- -.++| |..|.+. +.
T Consensus 241 Dktn~SYYGEq~Lyll~t~-g~s~~V~L~----k~GPVhdv~W--~~s~~EF~VvyGfMPAkvtif-nlr~~~v----~d 308 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQ-GESVSVPLL----KEGPVHDVTW--SPSGREFAVVYGFMPAKVTIF-NLRGKPV----FD 308 (566)
T ss_pred cCCCccccccceEEEEEec-CceEEEecC----CCCCceEEEE--CCCCCEEEEEEecccceEEEE-cCCCCEe----Ee
Confidence 1223344443 211111111 1223344443 345689999996 34444 7777654 45
Q ss_pred eCCCCcEEEEccCCe-----EEEEeC--CeEEEEEccCCCEEEEEe
Q psy15182 285 WGEMPTSVAYIGTGQ-----IMGWGN--KAIEIRSVETGHLDGVFM 323 (366)
Q Consensus 285 W~~~P~sva~~~~PY-----il~f~~--~~IEIR~v~tg~Lvq~i~ 323 (366)
+++-|-.-+| -.|+ |-||++ ..|||.++.+-.++-.+.
T Consensus 309 f~egpRN~~~-fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 309 FPEGPRNTAF-FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred CCCCCccceE-ECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 6777887777 4776 567876 899999999988877665
No 55
>KOG0639|consensus
Probab=31.12 E-value=3.6e+02 Score=28.69 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=48.2
Q ss_pred CceeEEeEEec---ceEEEeecceeEEEEecCCCceEEeecCCceEEEEEecCCCeE-----------EEEECCCCeEEE
Q psy15182 53 GSEILCAALWG---VNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNIL-----------VTISGKRNRVRV 118 (366)
Q Consensus 53 ~~~I~Caa~wg---~~LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~lL-----------i~lsGk~~~L~v 118 (366)
..++.||+.+. ++++-|-+-++-+.|.+++ .+|.+|.||+++...|.+ +.+-|.-..|.+
T Consensus 418 HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~p------g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISQP------GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred cCcEEEEEEecCCcceeEecCCCeEEEeeccCC------CCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 48999999994 4599999999999998644 466789999988555544 223455678888
Q ss_pred EEchh
Q psy15182 119 FYLSW 123 (366)
Q Consensus 119 ~~L~~ 123 (366)
|+|.+
T Consensus 492 WDLAa 496 (705)
T KOG0639|consen 492 WDLAA 496 (705)
T ss_pred eeccC
Confidence 88854
No 56
>KOG2111|consensus
Probab=30.49 E-value=5.6e+02 Score=25.57 Aligned_cols=103 Identities=19% Similarity=0.347 Sum_probs=52.2
Q ss_pred EEecc--e-EEEeecceeEEEEec--CCCceEEeecCCceEEEEEecCCCeEEEEECCC------CeEEEEEchhhhccc
Q psy15182 60 ALWGV--N-LLIGTETGLMLLDRS--GQGKVYQLVNRRRFQQMEVLEGQNILVTISGKR------NRVRVFYLSWLKSKI 128 (366)
Q Consensus 60 a~wg~--~-LllGTeeGlyll~~~--~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~------~~L~v~~L~~L~~~~ 128 (366)
+.|.+ . ..+|||.|.=+.+-+ ++..-.+..+- .+.=.+.|=.-|+|..+.|-+ ++|.+|| .++.+.
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD--D~k~~~ 87 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD--DLKERC 87 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEEe--cccCcE
Confidence 45643 2 779999997666643 00000011111 122223333457777776644 6777877 332210
Q ss_pred cccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCC
Q psy15182 129 LKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKP 181 (366)
Q Consensus 129 ~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p 181 (366)
...++-+. +.+ +.+-++..++|+.+++|.+|.+..+|
T Consensus 88 ---i~el~f~~------~I~-------~V~l~r~riVvvl~~~I~VytF~~n~ 124 (346)
T KOG2111|consen 88 ---IIELSFNS------EIK-------AVKLRRDRIVVVLENKIYVYTFPDNP 124 (346)
T ss_pred ---EEEEEecc------cee-------eEEEcCCeEEEEecCeEEEEEcCCCh
Confidence 00111110 001 12223467999999999999987554
No 57
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=29.63 E-value=2.5e+02 Score=27.81 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=51.9
Q ss_pred eEEeEEe-cceEEEeecc---eeEEEEecCCCceEEeecCC-ceE-EEEEecCCCeEEEEECCC--CeEEEEEchhhh
Q psy15182 56 ILCAALW-GVNLLIGTET---GLMLLDRSGQGKVYQLVNRR-RFQ-QMEVLEGQNILVTISGKR--NRVRVFYLSWLK 125 (366)
Q Consensus 56 I~Caa~w-g~~LllGTee---Glyll~~~~~~~~~~l~~~k-~v~-Ql~Vle~~~lLi~lsGk~--~~L~v~~L~~L~ 125 (366)
|.+-+.- |..|+|.++. |.|.+|.. ..+..++.+-. ++. |-+.++++++-+-|+..+ .+|+.++|....
T Consensus 179 i~sYavv~g~~I~vS~~~~~~GTysfDt~-~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~~ 255 (342)
T PF07893_consen 179 ITSYAVVDGRTIFVSVNGRRWGTYSFDTE-SHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSSAD 255 (342)
T ss_pred EEEEEEecCCeEEEEecCCceEEEEEEcC-CcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccccc
Confidence 8888888 6679997774 99999964 33455555543 332 788999999999998665 689999997754
No 58
>KOG1539|consensus
Probab=29.34 E-value=8.7e+02 Score=27.40 Aligned_cols=251 Identities=17% Similarity=0.179 Sum_probs=119.6
Q ss_pred ceEEEEEecCCCeEEEEECCCCeEEEEEchhhhc-cccccCC--cceeeeeeeE--eecCCCceEEEEEEE-cCe-EEEE
Q psy15182 93 RFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKS-KILKMDG--QVERRNGWIN--VGDLQGAVHFRIVKY-ERI-KFLV 165 (366)
Q Consensus 93 ~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~-~~~~~~~--~l~k~kg~~~--v~~~kgc~~f~v~~~-~~~-~~Lc 165 (366)
+-.=|.+..+.+-.+..+++|+.++.|.+....+ +.+...+ +-.|++|-.. --+.+--..|+.... ++. .=..
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 4555777878888888889999999999965432 1111111 1112233211 111223334443221 110 1145
Q ss_pred EEECCcEEEEEec--CCCcccccee-eeecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCceEEee--cCCCC
Q psy15182 166 IALKDSIEIYAWA--PKPYHKFMAF-KSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIY--LPKHI 240 (366)
Q Consensus 166 vA~k~~i~iy~w~--~~p~~kF~~~-Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~--~p~~~ 240 (366)
+|.+.....|.|+ .+...+|..- ++|.......+.+.++ -||+...+||. ...-+.+||++|-...-| .|++
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S-~G~Id~fNmQSGi~r~sf~~~~ah- 492 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYS-KGTIDRFNMQSGIHRKSFGDSPAH- 492 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEecc-CCeEEEEEcccCeeecccccCccc-
Confidence 5667778888886 2333333210 1111011122233222 25655556653 455677888887555444 2222
Q ss_pred CCCCcceEEEEecCCCCceEEE--EEcceEEEEeCCCceeeeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEE--EccCC
Q psy15182 241 QGPICPHCIVALPNSNGMQLLL--CYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIR--SVETG 316 (366)
Q Consensus 241 ~~~~~p~~I~~l~~~~~~E~LL--cy~~~~vfVn~~G~~sr~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR--~v~tg 316 (366)
.+ +|.-|.-|.-+..++ |++-.--|-|..++.-. -.+.=...+..++|.+..-++|..-+---|| +++|.
T Consensus 493 ~~-----~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~-~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 493 KG-----EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK-KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred cC-----ceeEEEecCCCceEEEccCcceEEEEecCCccee-eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 11 233222122233444 45555556666655421 1334455688888854555555555544555 55555
Q ss_pred CEEEEEe-ccCCCceeEEEEeCCEEEEEeCCCCCeeEEE
Q psy15182 317 HLDGVFM-HKKSQRLKFLCERNDKVFFSSAKGGGHCQIY 354 (366)
Q Consensus 317 ~Lvq~i~-~k~~~~lr~L~~~~d~vf~as~~~~~~~~v~ 354 (366)
..|..+. | ..++.=++=..|-=.+.++.-++.=.+|
T Consensus 567 kvvR~f~gh--~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 567 KVVREFWGH--GNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred hhhHHhhcc--ccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 5555553 2 3444444433333233333344455555
No 59
>KOG0640|consensus
Probab=29.06 E-value=92 Score=30.98 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=45.2
Q ss_pred ceeEEeEE--ecceEEEeecceeEEEEecCCCceEEee--------cCCceEEEEEecCCCeEEEEECCCCeEEEEE
Q psy15182 54 SEILCAAL--WGVNLLIGTETGLMLLDRSGQGKVYQLV--------NRRRFQQMEVLEGQNILVTISGKRNRVRVFY 120 (366)
Q Consensus 54 ~~I~Caa~--wg~~LllGTeeGlyll~~~~~~~~~~l~--------~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~ 120 (366)
..+-|..- =|+.||+|||.-+..++.-. .+|-| ....|+|+..-+.-+|-++-| ||+.+++|+
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~---T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwD 289 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVN---TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWD 289 (430)
T ss_pred ceeeeEeecCCCceEEEecCCCceeEEecc---ceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeec
Confidence 44455543 37889999999999888521 11211 112599999999888888876 999999997
No 60
>KOG0291|consensus
Probab=27.23 E-value=9.2e+02 Score=27.00 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=71.4
Q ss_pred ceeEEeEEe--cceEEEeecceeEEEEecCCCceEEeecC--CceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcccc
Q psy15182 54 SEILCAALW--GVNLLIGTETGLMLLDRSGQGKVYQLVNR--RRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKIL 129 (366)
Q Consensus 54 ~~I~Caa~w--g~~LllGTeeGlyll~~~~~~~~~~l~~~--k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~ 129 (366)
..|+|.+-= |+.++=|+|+|---+.....+-..--|+- ..|+-+.+....+.|++.| -|++|+.|||...++=
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS-LDGtVRAwDlkRYrNf-- 427 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS-LDGTVRAWDLKRYRNF-- 427 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee-cCCeEEeeeeccccee--
Confidence 678888754 45688899988766653222212222322 3688888888889998765 6899999999776531
Q ss_pred ccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCC
Q psy15182 130 KMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKP 181 (366)
Q Consensus 130 ~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p 181 (366)
+. -..|.+ .++-++........+|++-+.+-.||-|.-++
T Consensus 428 RT-ft~P~p-----------~QfscvavD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 428 RT-FTSPEP-----------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred ee-ecCCCc-----------eeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence 00 011111 12223334334578899999999999997543
No 61
>KOG0318|consensus
Probab=25.40 E-value=8.5e+02 Score=26.02 Aligned_cols=108 Identities=13% Similarity=0.236 Sum_probs=61.8
Q ss_pred EEeeec-CCeEEEEEecCCceEEEECC-CCceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEcceEEEEeCCCceee
Q psy15182 202 DLTVEE-GTRLKVIYGSADGFHAVDLD-SAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSK 279 (366)
Q Consensus 202 ~l~v~~-~~~l~V~~g~~~gF~~idl~-~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G~~sr 279 (366)
.+..++ ++-+-+|+- +....+++. ++-...-. ...+..|..+..++ ++.--++.|+.+..++.|..+-.+.
T Consensus 368 ~~~~~~~~~~~t~g~D--d~l~~~~~~~~~~t~~~~----~~lg~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~~~ 440 (603)
T KOG0318|consen 368 GMAASESGELFTIGWD--DTLRVISLKDNGYTKSEV----VKLGSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKVSSI 440 (603)
T ss_pred EEeecCCCcEEEEecC--CeEEEEecccCcccccce----eecCCCceeEEEcC-CCCEEEEEecCcEEEEecCCcceee
Confidence 344444 334456665 666677764 22111111 12244555554443 3335677799999888776665554
Q ss_pred eeeeeeCCCCcEEEEccCC--e-EEEEeCCeEEEEEccCCCEEEE
Q psy15182 280 NILLQWGEMPTSVAYIGTG--Q-IMGWGNKAIEIRSVETGHLDGV 321 (366)
Q Consensus 280 ~~~l~W~~~P~sva~~~~P--Y-il~f~~~~IEIR~v~tg~Lvq~ 321 (366)
+ +.++ |+++|. +.. + .+|=...-+.|..+.-++|+-.
T Consensus 441 ~--~~y~--~s~vAv-~~~~~~vaVGG~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 441 P--IGYE--SSAVAV-SPDGSEVAVGGQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred c--cccc--cceEEE-cCCCCEEEEecccceEEEEEecCCcccce
Confidence 4 4453 667666 332 3 5555566799999999887544
No 62
>KOG1445|consensus
Probab=24.16 E-value=9.2e+02 Score=26.58 Aligned_cols=199 Identities=12% Similarity=0.167 Sum_probs=0.0
Q ss_pred EEecce-EEEeecceeEEEEe---cC-------CCceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccc
Q psy15182 60 ALWGVN-LLIGTETGLMLLDR---SG-------QGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKI 128 (366)
Q Consensus 60 a~wg~~-LllGTeeGlyll~~---~~-------~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~ 128 (366)
++||.. |.||||+|.--+-+ .| ..++.....-| |+-|..-+=.-=+++.+--|..+.+|+|..-..+.
T Consensus 636 dPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK-I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~ 714 (1012)
T KOG1445|consen 636 DPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK-ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS 714 (1012)
T ss_pred CCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce-EEEEEecchhhhHhhhhhccceeeeeehhhhhhhh
Q ss_pred cccCCcceeeeeeeEeecCCCceEEEEEE-EcCeEEEEEEECCcEEEEEecCCCccccceeeeecccCCCceEEEEeeec
Q psy15182 129 LKMDGQVERRNGWINVGDLQGAVHFRIVK-YERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEE 207 (366)
Q Consensus 129 ~~~~~~l~k~kg~~~v~~~kgc~~f~v~~-~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~ 207 (366)
.-..+. -..|.+.. .+|++.--|..--+|.+|+ |...=..++| ..-|---.---..-.+
T Consensus 715 ~l~gHt---------------dqIf~~AWSpdGr~~AtVcKDg~~rVy~----Prs~e~pv~E-g~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 715 RLVGHT---------------DQIFGIAWSPDGRRIATVCKDGTLRVYE----PRSREQPVYE-GKGPVGTRGARILWAC 774 (1012)
T ss_pred eeccCc---------------CceeEEEECCCCcceeeeecCceEEEeC----CCCCCCcccc-CCCCccCcceeEEEEe
Q ss_pred CCeEEEEEe----cCCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEcceEEEEeCCCcee-eeee
Q psy15182 208 GTRLKVIYG----SADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVS-KNIL 282 (366)
Q Consensus 208 ~~~l~V~~g----~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~~~~vfVn~~G~~s-r~~~ 282 (366)
.+++.|+.| |.++-.++|.++-+--.|+ -......|...+.-++ ||.-.+|+...|.+. .-++
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~---t~~lDvaps~LvP~YD---------~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY---TQVLDVAPSPLVPHYD---------YDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcce---eeeecccCcccccccc---------CCCceEEEecCCCceEEEEE
Q ss_pred eeeCCCCcEEEEccCCeEE
Q psy15182 283 LQWGEMPTSVAYIGTGQIM 301 (366)
Q Consensus 283 l~W~~~P~sva~~~~PYil 301 (366)
+.. ..||++
T Consensus 843 v~~----------esPy~l 851 (1012)
T KOG1445|consen 843 VIY----------ESPYLL 851 (1012)
T ss_pred ecC----------CCceee
No 63
>KOG1963|consensus
Probab=24.16 E-value=5.5e+02 Score=28.68 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=53.3
Q ss_pred ceeEEeEEe--cceEEEeecceeEEEEecCCCceEEeecC--CceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcc
Q psy15182 54 SEILCAALW--GVNLLIGTETGLMLLDRSGQGKVYQLVNR--RRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSK 127 (366)
Q Consensus 54 ~~I~Caa~w--g~~LllGTeeGlyll~~~~~~~~~~l~~~--k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~ 127 (366)
.+++|-+-= |.+||=|-.||++.+-..+.++ .+...| .+|.-+.|.|+-++-.++. .|+++++..++.+..+
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIK 327 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhh
Confidence 366665422 6779999999999887654444 466666 3799999998888776655 3999999999887643
No 64
>KOG0306|consensus
Probab=23.71 E-value=3e+02 Score=30.54 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=52.0
Q ss_pred ceeEEeEEecce--EEEeecceeEEEEec--CCCceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchh
Q psy15182 54 SEILCAALWGVN--LLIGTETGLMLLDRS--GQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSW 123 (366)
Q Consensus 54 ~~I~Caa~wg~~--LllGTeeGlyll~~~--~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~ 123 (366)
.++.|..+.++. |+||=++|.--+-.. +...++....++.|+-|.+- ..+..++-.|||..+.+||+-.
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd-~~G~rlaSGskDt~IIvwDlV~ 138 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFD-KIGTRLASGSKDTDIIVWDLVG 138 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEc-ccCceEeecCCCccEEEEEecc
Confidence 489999988765 699999998777542 23223445567789988775 5788888888999999999954
No 65
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=23.61 E-value=2.5e+02 Score=29.04 Aligned_cols=64 Identities=11% Similarity=0.219 Sum_probs=35.1
Q ss_pred ceeEEeEEecce-EEEeecceeEEEEecCCCceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEE
Q psy15182 54 SEILCAALWGVN-LLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFY 120 (366)
Q Consensus 54 ~~I~Caa~wg~~-LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~ 120 (366)
....|-..||.. |++.+++.+.+.|.. +.++.+-++..+|+.+..-++-+++..++ + ..++++.
T Consensus 107 ~~~~~~~If~G~LL~~~~~~~i~~yDw~-~~~~i~~i~v~~vk~V~Ws~~g~~val~t-~-~~i~il~ 171 (443)
T PF04053_consen 107 LPFSVEKIFGGNLLGVKSSDFICFYDWE-TGKLIRRIDVSAVKYVIWSDDGELVALVT-K-DSIYILK 171 (443)
T ss_dssp -SS-EEEEE-SSSEEEEETTEEEEE-TT-T--EEEEESS-E-EEEEE-TTSSEEEEE--S--SEEEEE
T ss_pred CCcccceEEcCcEEEEECCCCEEEEEhh-HcceeeEEecCCCcEEEEECCCCEEEEEe-C-CeEEEEE
Confidence 344677777766 555555558888875 34566777777788888887777776665 3 3455543
No 66
>KOG0646|consensus
Probab=23.61 E-value=4e+02 Score=27.80 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=47.1
Q ss_pred cCCceeEEeEEe--cceEEEeecceeEEEEe----cCCCc------------eEEe--ec--CCceEEEEEecCCCeEEE
Q psy15182 51 KFGSEILCAALW--GVNLLIGTETGLMLLDR----SGQGK------------VYQL--VN--RRRFQQMEVLEGQNILVT 108 (366)
Q Consensus 51 ~f~~~I~Caa~w--g~~LllGTeeGlyll~~----~~~~~------------~~~l--~~--~k~v~Ql~Vle~~~lLi~ 108 (366)
.||..|.|.+.= +..+++||++|-..... +++.. -.++ .. ++.|+-++|--+-.+|++
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 468888888753 45599999999865542 22110 0121 22 247888888765555543
Q ss_pred EECCCCeEEEEEchhh
Q psy15182 109 ISGKRNRVRVFYLSWL 124 (366)
Q Consensus 109 lsGk~~~L~v~~L~~L 124 (366)
-++|+++++|+....
T Consensus 295 -Gd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 295 -GDEDGKVCVWDIYSK 309 (476)
T ss_pred -eCCCCCEEEEecchH
Confidence 468999999998653
No 67
>KOG1539|consensus
Probab=22.68 E-value=1.1e+03 Score=26.51 Aligned_cols=241 Identities=14% Similarity=0.167 Sum_probs=116.2
Q ss_pred eecCCceeEEeEEecceEEEeecceeEEEEecCCCceEEeecC--CceEEEEEecCCCeEEEEECCCCeEEEEEchhhhc
Q psy15182 49 KKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNR--RRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKS 126 (366)
Q Consensus 49 ~k~f~~~I~Caa~wg~~LllGTeeGlyll~~~~~~~~~~l~~~--k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~ 126 (366)
.+..|.+|.|.++..+..++|-..-+|...|... +.-.+.. .+|.-|...-++=+-+.+ ++.|++|..+.-..
T Consensus 72 s~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~--i~~~~~~~~a~v~~l~~fGe~lia~d~---~~~l~vw~~s~~~~ 146 (910)
T KOG1539|consen 72 SKPLPDKITALASDKDYVYVASGNKIYAYARGKH--IRHTTLLHGAKVHLLLPFGEHLIAVDI---SNILFVWKTSSIQE 146 (910)
T ss_pred cCCCCCceEEEEecCceEEEecCcEEEEEEccce--EEEEeccccceEEEEeeecceEEEEEc---cCcEEEEEeccccc
Confidence 3556899999999988899999999998887311 1112211 356666666444444444 78899998866311
Q ss_pred cccccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecC-CCccccceeee-ecccCCCceEEEEe
Q psy15182 127 KILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAP-KPYHKFMAFKS-FGELGYRPLLVDLT 204 (366)
Q Consensus 127 ~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~-~p~~kF~~~Ke-f~~lp~~p~~v~l~ 204 (366)
.. ..+-..-+-.+.. +..+ ||.-+ |- ++.++..-+.+++++..+. |-.+.|..+.+ +..+-..|. +|
T Consensus 147 e~-~l~~~~~~~~~~~-Ital--~HP~T---YL-NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa-LD-- 215 (910)
T KOG1539|consen 147 EL-YLQSTFLKVEGDF-ITAL--LHPST---YL-NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA-LD-- 215 (910)
T ss_pred cc-cccceeeeccCCc-eeeE--ecchh---he-eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc-ce--
Confidence 10 0000011111100 0000 11000 00 1333334444566554443 22233322211 111111221 12
Q ss_pred eecCCeEEEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEEEEec-CCCCceEEEEEcceE--EEEeCCCceeeee
Q psy15182 205 VEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALP-NSNGMQLLLCYDNEG--VYVNTYGKVSKNI 281 (366)
Q Consensus 205 v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~-~~~~~E~LLcy~~~~--vfVn~~G~~sr~~ 281 (366)
-+.||.. ...-++.|+..++..--|.- | .+ .|..++ .++|.-+|..=+..| .|=|+++++....
T Consensus 216 -----VVaiG~~-~G~ViifNlK~dkil~sFk~-d-~g-----~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 216 -----VVAIGLE-NGTVIIFNLKFDKILMSFKQ-D-WG-----RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred -----EEEEecc-CceEEEEEcccCcEEEEEEc-c-cc-----ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 2223333 23456778876655433311 1 11 233333 233444444444333 3459999875332
Q ss_pred --eeeeCCCCcEEEEccCCeEE-EEeCCeEEEEEccCCCE
Q psy15182 282 --LLQWGEMPTSVAYIGTGQIM-GWGNKAIEIRSVETGHL 318 (366)
Q Consensus 282 --~l~W~~~P~sva~~~~PYil-~f~~~~IEIR~v~tg~L 318 (366)
....++.+.+-.+-..|-++ ++..|+.-+...++|.=
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg 322 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG 322 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC
Confidence 24566667765554566644 44457888777776653
No 68
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=22.24 E-value=4.4e+02 Score=21.53 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=30.7
Q ss_pred cCCeEEEEEecCCc-eEEEECC---CCceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEc
Q psy15182 207 EGTRLKVIYGSADG-FHAVDLD---SAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYD 265 (366)
Q Consensus 207 ~~~~l~V~~g~~~g-F~~idl~---~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~ 265 (366)
.++++.+-.+.... -..+.|+ +-...++..+.++..+-.-++|++|. ++++-+||+
T Consensus 36 ~g~~~~~~~~~~~~~~~~~~Ld~~~~Pk~id~~~~~g~~~g~~~~gIY~l~---gd~L~vC~~ 95 (107)
T TIGR03067 36 KGDKLTVKDGEGDQGKGTFKLDPAANPKTIDLTSPDGPDKGKTIKGIYKLD---GDTLTVCFS 95 (107)
T ss_pred eCCEEEEEcCCCcceeEEEEECCCCCccEEEEEccCCCCCCCEEEEEEEEc---CCEEEEEEC
Confidence 35555554442110 2344443 22334555444444455667899885 479999997
No 69
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=22.12 E-value=7.8e+02 Score=24.97 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred EEEeecceeEEEEe-----cCCCceEEeecC----CceEEEEEe----------------------cCCCeEEEEECCCC
Q psy15182 66 LLIGTETGLMLLDR-----SGQGKVYQLVNR----RRFQQMEVL----------------------EGQNILVTISGKRN 114 (366)
Q Consensus 66 LllGTeeGlyll~~-----~~~~~~~~l~~~----k~v~Ql~Vl----------------------e~~~lLi~lsGk~~ 114 (366)
|++||+.|..+... ++...+.-.-.. .+|.+|..+ ...+++|+.+ ++
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS--e~ 235 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS--ES 235 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE---SS
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc--cc
Q ss_pred eEEEEEchhhhccccccCCcceeeeeeeE-eecCCCceEEEEE----EEcCeEEEEEEECCcEEEE
Q psy15182 115 RVRVFYLSWLKSKILKMDGQVERRNGWIN-VGDLQGAVHFRIV----KYERIKFLVIALKDSIEIY 175 (366)
Q Consensus 115 ~L~v~~L~~L~~~~~~~~~~l~k~kg~~~-v~~~kgc~~f~v~----~~~~~~~LcvA~k~~i~iy 175 (366)
.++++.+ ++.|+.++ ..+...|.-.++. +..+..++|+-....+.+|
T Consensus 236 ~irv~~~--------------~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 236 DIRVFKP--------------PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp EEEEE-T--------------T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred ceEEEeC--------------CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
No 70
>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast.; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.
Probab=21.87 E-value=88 Score=26.35 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=13.8
Q ss_pred cceEEEeecceeEEEEecCC
Q psy15182 63 GVNLLIGTETGLMLLDRSGQ 82 (366)
Q Consensus 63 g~~LllGTeeGlyll~~~~~ 82 (366)
+.+|.+||-+|+|+.+.+++
T Consensus 89 ~G~L~LGtwQ~I~l~E~dgp 108 (118)
T PF01894_consen 89 DGKLALGTWQGIYLVEFDGP 108 (118)
T ss_dssp TTEE---TTEEEEEEESS-S
T ss_pred CCEEccCCcCEEEEEECCCC
Confidence 56799999999999998763
No 71
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.58 E-value=6e+02 Score=23.41 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=43.1
Q ss_pred CceeEEeEEecceEEEeecceeEEE-EecCC-----C-ceEEeec---------CCceEEEEEecCCCeEEEEECCCCeE
Q psy15182 53 GSEILCAALWGVNLLIGTETGLMLL-DRSGQ-----G-KVYQLVN---------RRRFQQMEVLEGQNILVTISGKRNRV 116 (366)
Q Consensus 53 ~~~I~Caa~wg~~LllGTeeGlyll-~~~~~-----~-~~~~l~~---------~k~v~Ql~Vle~~~lLi~lsGk~~~L 116 (366)
++.+......|+.|++=|+.|.+.+ |.... . .+.++++ ...|+++.|-++=-.+|+++ ++..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls--ng~~ 89 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS--NGDS 89 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe--CCCE
Confidence 3455555556777888899998765 43211 1 1223332 24799999986666667787 5677
Q ss_pred EEEEch
Q psy15182 117 RVFYLS 122 (366)
Q Consensus 117 ~v~~L~ 122 (366)
|+|+.+
T Consensus 90 y~y~~~ 95 (219)
T PF07569_consen 90 YSYSPD 95 (219)
T ss_pred EEeccc
Confidence 888763
No 72
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=20.56 E-value=4.7e+02 Score=24.51 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=43.0
Q ss_pred CCcEEEEccC-CeEE-EEeCCeEEEEEcc--CCCEEEEEeccCCCceeEEEEeCCEEEEEeCCCCCee-----EEEE
Q psy15182 288 MPTSVAYIGT-GQIM-GWGNKAIEIRSVE--TGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHC-----QIYF 355 (366)
Q Consensus 288 ~P~sva~~~~-PYil-~f~~~~IEIR~v~--tg~Lvq~i~~k~~~~lr~L~~~~d~vf~as~~~~~~~-----~v~~ 355 (366)
.|..+.+ .. .+|+ |-....||++.++ ...+..+++.- .+-+++..+..+-+.++-......+ ++|+
T Consensus 19 EP~~~c~-~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 19 EPTAVCC-GGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred Ccceeec-cCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 6999888 56 6774 4677999999998 44667777521 3556666665555656555444444 6664
No 73
>KOG4328|consensus
Probab=20.16 E-value=1e+03 Score=24.96 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=46.9
Q ss_pred ceEEEeecceeEEE-Ee--cCC-CceEEeecCCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcc
Q psy15182 64 VNLLIGTETGLMLL-DR--SGQ-GKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSK 127 (366)
Q Consensus 64 ~~LllGTeeGlyll-~~--~~~-~~~~~l~~~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~ 127 (366)
..+|+|+.-|.|-+ |+ ++. ....++ .+++|.-|++-|..--+++-+|-|+.++.|||..|..+
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK 358 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence 45999999996533 43 222 222233 44479999999999888888899999999999998865
Done!