RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15182
(366 letters)
>gnl|CDD|214481 smart00036, CNH, Domain found in NIK1-like kinases, mouse citron
and yeast ROM1, ROM2.
Length = 302
Score = 280 bits (719), Expect = 2e-93
Identities = 99/310 (31%), Positives = 153/310 (49%), Gaps = 19/310 (6%)
Query: 48 YKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQ-GKVYQLVNRRRFQQMEVLEGQNIL 106
K+ I C W LL+GTE GL +L+ S Q G + +L+ RR Q+ VLE N+L
Sbjct: 1 NTAKWNHPITCDGKW---LLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVL 57
Query: 107 VTISGKRNRVRVFYLSWLKSKILKM--DGQVERRNGWINVGDLQGAVHFRIVKYERIKFL 164
+ ISGK+ ++ LS L K + V R+N + D++G +V +R FL
Sbjct: 58 LMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDVKGCHLCAVVNGKRSLFL 117
Query: 165 VIALKDSIEIYAWAPKPYHKFMAFKSFGELGYR---PLLVDLTVEEGTRLKVIYGS-ADG 220
+AL+ S+ + W P KF FKS P+ V+L R + GS G
Sbjct: 118 CVALQSSVVLLQW-YNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGG 176
Query: 221 FHAVDLDSAMV--YDIYLPKHIQGPIC-PHCIVALPNSNGMQLLLCYDNEGVYVNTYGK- 276
V ++V D+ LP + P +V +P ++LLCYD GV+VN YGK
Sbjct: 177 GDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPR---DEVLLCYDEFGVFVNLYGKR 233
Query: 277 VSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCER 336
S+N +L W MP S AY ++ + + IEIRS++TG L +++++++ L
Sbjct: 234 RSRNPILHWEFMPESFAYHS-PYLLAFHDNGIEIRSIKTGELLQELADRETRKIRLLGSS 292
Query: 337 NDKVFFSSAK 346
+ K+ SS+
Sbjct: 293 DRKILLSSSP 302
>gnl|CDD|216115 pfam00780, CNH, CNH domain. Domain found in NIK1-like kinase,
mouse citron and yeast ROM1, ROM2. Unpublished
observations.
Length = 266
Score = 215 bits (551), Expect = 2e-68
Identities = 90/288 (31%), Positives = 135/288 (46%), Gaps = 29/288 (10%)
Query: 57 LCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRV 116
+C A G LL+GTE GL LL+ G V ++V Q+ VLE N+L+++S K+ +
Sbjct: 1 VCPATGGQRLLLGTEEGLYLLNIDESGPV-RIVKLFSVTQLAVLEEFNLLLSLSDKQ--L 57
Query: 117 RVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYA 176
V+ LS L SK L + + +G F Y +FLV+A+K +I++Y
Sbjct: 58 YVYPLSALDSKELSSKS------APQKLPETKGCSFFARAGYCGGRFLVVAVKRTIKLYE 111
Query: 177 WAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYL 236
W P KF K F E + + + K+ G A GF VDLD+ +
Sbjct: 112 WYE-PLKKF--HKLFKEFYVPAEVFSIAF---LKPKLCVGCAKGFELVDLDTGATQSLLD 165
Query: 237 PKH-------IQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMP 289
P + + P +V L + + LLCYD VYVN G+ S++ L+W P
Sbjct: 166 PADQSLDFAARKENLKPLAVVRLSDD---EFLLCYDEFAVYVNLQGRRSRDQELEWEGAP 222
Query: 290 TSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERN 337
SVAY+ ++ + IEIRSVETG L +++FL +
Sbjct: 223 ESVAYLY-PYLLAFHPNFIEIRSVETGEL---VQTIPGPKIRFLHSGS 266
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 52.6 bits (126), Expect = 2e-07
Identities = 59/304 (19%), Positives = 102/304 (33%), Gaps = 42/304 (13%)
Query: 53 GSEILCAALW--GVNLLIGTETGLMLLDR-SGQGKVYQ---LVNRRRFQQMEVLEGQNIL 106
+++ L+ G LL GT GL + +R + + L+ Q+ V+E ++
Sbjct: 857 TNKVNPVPLYDSGRKLLTGTNKGLYISNRKDNVNRFNKPIDLLQEPNISQIIVIEEYKLM 916
Query: 107 VTISGKRNRVRVFY---LSWLKSKILKMDGQVERRNGWINV---GDLQGAVHFRIVKYER 160
+ +S K Y L + + + + NG ++ G G VK
Sbjct: 917 LLLSDK-----KLYSCPLDVIDASTEENVKKSRIVNGHVSFFKQGFCNGKRLVCAVKSSS 971
Query: 161 IKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRL--KVIYGSA 218
+ +A+ ++ K K+ L V L K+ G
Sbjct: 972 L-SATLAVIEAPLALKKNKSGNLK----KALTIELSTELYVPSEPLSVHFLKNKLCIGCK 1026
Query: 219 DGFHAVDLDSAM------VYD-IYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYV 271
GF V L++ D L + P I + LLCY +V
Sbjct: 1027 KGFEIVSLENLRTESLLNPADTSPLFFEKKENTKPIAIFRVSGE----FLLCYSEFAFFV 1082
Query: 272 NTYGKVSK-NILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQR- 329
N G + + + W P A + I+ + IEIR +ETG L +
Sbjct: 1083 NDQGWRKRTSWIFHWEGEPQEFA-LSYPYILAFEPNFIEIRHIETGEL----IRCILGHN 1137
Query: 330 LKFL 333
++ L
Sbjct: 1138 IRLL 1141
>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2
[Coenzyme metabolism].
Length = 254
Score = 30.1 bits (68), Expect = 1.6
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 194 LGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALP 253
R L+ D V+ G L ++G A GF V P C C+
Sbjct: 131 FETRYLINDACVKLGIPL--VHGGAIGFEG----QVTVIIPGDK----TP-CYRCLFPEK 179
Query: 254 NSNGMQLLLCYDN--EGVYVNTYG 275
G+ C + G V G
Sbjct: 180 PPPGLVPTSCDEAGVLGPLVGVVG 203
>gnl|CDD|236720 PRK10577, PRK10577, iron-hydroxamate transporter permease subunit;
Provisional.
Length = 668
Score = 27.9 bits (63), Expect = 9.9
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 51 KFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKV 85
+ + + + L G LL+ T+ + LL G +
Sbjct: 277 RLRARLPLSPLIGALLLLLTDQLVRLLAGVGGELL 311
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.431
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,615,565
Number of extensions: 1800554
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1217
Number of HSP's successfully gapped: 9
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)