RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15182
         (366 letters)



>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus
           cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}
          Length = 235

 Score = 27.9 bits (62), Expect = 1.6
 Identities = 22/205 (10%), Positives = 52/205 (25%), Gaps = 27/205 (13%)

Query: 42  TPEIRKYKKKFGSEI-LCAALWGVNLLIGTETGLMLL--DRSGQGKVYQLVNRRRFQQME 98
           T  ++   KK      L   L+            ++       +    + ++   F  + 
Sbjct: 36  TGAMKPIAKKIKLNQELAEELYATGNYDAMYFAGIIADPKAMSESDFDRWIDGAYFYML- 94

Query: 99  VLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKY 158
                 ++     + N  +     W+ S        ++   GW     L   +  R    
Sbjct: 95  ---SDYVVAVTLSESNIAQDVADKWIASGDE-----LKMSAGWSCYCWL---LGNRKDNA 143

Query: 159 ERIKFLVIALKDSIEIYAWAPKPY-HKFMAFKSFGELGYR-PLLVDLTVEEGTRLKVIYG 216
                +   L + ++             M       +      L +  VE    + ++  
Sbjct: 144 FSESKISDML-EMVKDTIHHSPERTKSAMNN-FLNTVAISYVPLHEKAVEIAKEVGIV-- 199

Query: 217 SADGFHAVDLDSAMVYDIYLPKHIQ 241
                  V  D+     +   + IQ
Sbjct: 200 ------EVKRDNKKSSLLNASESIQ 218


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 28.2 bits (63), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 198 PLLVDLTVEEG--TRLKVIYGSADG 220
           PL+V LTVE G    + V+ GS   
Sbjct: 42  PLVVGLTVESGFEANVAVVVGSRTT 66


>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
           [TaxId: 562]}
          Length = 333

 Score = 26.7 bits (57), Expect = 4.7
 Identities = 14/169 (8%), Positives = 42/169 (24%), Gaps = 9/169 (5%)

Query: 162 KFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGF 221
           ++L + ++    + A+   P    + F +   L      +    +        Y + +  
Sbjct: 49  RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVS 108

Query: 222 HAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYG------ 275
                       + +   ++G    H     P++  + +     +               
Sbjct: 109 V---TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165

Query: 276 KVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMH 324
           +    +    G  P  + +    Q     N+      V         + 
Sbjct: 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 214


>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 144

 Score = 25.7 bits (56), Expect = 6.2
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 9/60 (15%)

Query: 193 ELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVY-DIYLPKHIQGPICPHCIVA 251
           E  YR        + GTRL          H   L + ++Y   +   H       +   A
Sbjct: 33  EARYRREGARFIFDVGTRLG--------LHYDTLATGIIYFHRFYMFHSFKQFPRYVTGA 84


>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 24.4 bits (53), Expect = 8.8
 Identities = 8/25 (32%), Positives = 9/25 (36%)

Query: 183 HKFMAFKSFGELGYRPLLVDLTVEE 207
                  SF       L+VD T EE
Sbjct: 3   RTHPVATSFAVFDDTLLIVDPTGEE 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,396,499
Number of extensions: 67095
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 7
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)