BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15183
(1973 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/405 (47%), Positives = 266/405 (65%), Gaps = 31/405 (7%)
Query: 241 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-------------------Y 281
I RPQL+F+ K+DNS F PK+ KPNA KPL L K
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 282 DAI----------ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 331
D I + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 332 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 391
+L +L QE A++LE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 392 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 451
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 452 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 511
+QL DWR RPLPE + YAR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 512 LKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 570
K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L
Sbjct: 301 KKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMML 360
Query: 571 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 615
++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 361 KIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 405
Score = 289 bits (740), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/317 (47%), Positives = 205/317 (64%), Gaps = 30/317 (9%)
Query: 1686 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-------------------Y 1726
I RPQL+F+ K+DNS F PK+ KPNA KPL L K
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 1727 DAI----------ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 1776
D I + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 1777 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 1836
+L +L QE A++LE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 1837 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 1896
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 1897 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 1956
+QL DWR RPLPE + YAR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 1957 LKYEKPVFNEEGYMNIF 1973
K+ KP+F +E Y+ ++
Sbjct: 301 KKFIKPIFTDESYLELY 317
>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/405 (47%), Positives = 265/405 (65%), Gaps = 31/405 (7%)
Query: 241 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-------------------Y 281
I RPQL+F+ K+DNS F PK+ KPNA KPL L K
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 282 DAI----------ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 331
D I + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 332 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 391
+L +L QE A+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 392 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 451
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 452 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 511
+QL DWR RPLPE + AR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSAARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 512 LKYEKPVFNEEGYMNIFRSH-ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 570
K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L
Sbjct: 301 KKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMML 360
Query: 571 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 615
++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 361 KIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 405
Score = 288 bits (736), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 151/317 (47%), Positives = 204/317 (64%), Gaps = 30/317 (9%)
Query: 1686 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK-------------------Y 1726
I RPQL+F+ K+DNS F PK+ KPNA KPL L K
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 1727 DAI----------ESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 1776
D I + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 1777 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 1836
+L +L QE A+DLE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 1837 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 1896
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 1897 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 1956
+QL DWR RPLPE + AR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSAARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 1957 LKYEKPVFNEEGYMNIF 1973
K+ KP+F +E Y+ ++
Sbjct: 301 KKFIKPIFTDESYLELY 317
>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 297 bits (760), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 229/375 (61%), Gaps = 22/375 (5%)
Query: 241 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 296
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 3 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 62
Query: 297 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 356
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 63 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 122
Query: 357 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 416
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 123 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 182
Query: 417 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 476
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 183 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 242
Query: 477 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE----KPV---------FNEEG 523
LL +YD ++ L + N + SRN+ K ++E +P+ +E
Sbjct: 243 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 297
Query: 524 YMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGI 583
I + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+
Sbjct: 298 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 357
Query: 584 FACCNPVPQTVKEHV 598
+ N V + V+++
Sbjct: 358 VSLTNGVTEHVRQNA 372
Score = 258 bits (658), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 132/279 (47%), Positives = 183/279 (65%), Gaps = 9/279 (3%)
Query: 1686 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 1741
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 3 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 62
Query: 1742 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 1801
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 63 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 122
Query: 1802 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 1861
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 123 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 182
Query: 1862 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 1921
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 183 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 242
Query: 1922 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYE 1960
LL +YD ++ L + N + SRN+ K ++E
Sbjct: 243 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFE 276
>pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome
Component 10
Length = 124
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 516 KPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 574
KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+
Sbjct: 8 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 67
Query: 575 SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTK 615
+P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 68 ELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLK 108
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|I Chain I, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 3 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKD--SYVGDEAQSKRGI- 59
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
L+ + +VT++D E+I+ + F + L + E HP++LTE +NP +R M++
Sbjct: 60 LTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPMNPKSNREKMTQ 116
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP+ I ++ S +G +G+++ G THV+P+ G RID
Sbjct: 117 IMFETFNVPAFYVSIQAVLSLYSSGR--TTGIVLDSGDGVTHVVPIYAGFSLPHAILRID 174
Query: 1045 LGGFSVIHHLHKLL 1058
L G + +L K+L
Sbjct: 175 LAGRDLTDYLMKIL 188
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+S+ + EL + + IG ER PE LF PS+LG AGI +T + + +
Sbjct: 229 SSIEKSYEL--PDGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRK 286
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L NI ++G PG ER+ K++ P S V + PE W G +
Sbjct: 287 ELYGNIVMSGGTTMFPGIAERMQKEITALAP--SSMKVKIIAPPERKYSVWIGGSILASL 344
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 345 TTFQQMWISKQEYDESG 361
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5O|C Chain C, Crystal Structure Of A Dictyostelium P109i Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 375
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 116/229 (50%), Gaps = 14/229 (6%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 65 LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAILNPKANREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVSHTVPIYEGYALPHAILRLD 179
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + ++ K+L + S + + ++ +VA D+ ++
Sbjct: 180 LAGRDLTDYMMKILTERGYSFTTTAAAAIVRDIKEKLAYVALDFEAEMQ 228
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
++L + EL + + IG ER PE LFQPS LG AGI ET + I +
Sbjct: 234 SALEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N+ ++G PG +R+NK+L P S + + PE W G +
Sbjct: 292 DLYGNVVLSGGTTMFPGIADRMNKELTALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKEEYDESG 366
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1
Complex
Length = 375
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
L+ + +VT++D E+I+ + F + L + E HP++LTE +NP +R M++
Sbjct: 65 LTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPMNPKSNREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP+ I ++ S +G +G+++ G THV+P+ G RID
Sbjct: 122 IMFETFNVPAFYVSIQAVLSLYSSGR--TTGIVLDSGDGVTHVVPIYAGFSLPHAILRID 179
Query: 1045 LGGFSVIHHLHKLL 1058
L G + +L K+L
Sbjct: 180 LAGRDLTDYLMKIL 193
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+S+ + EL + + IG ER PE LF PS+LG AGI +T + + +
Sbjct: 234 SSIEKSYEL--PDGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L NI ++G PG ER+ K++ P S V + PE W G +
Sbjct: 292 ELYGNIVMSGGTTMFPGIAERMQKEITALAP--SSMKVKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKGGEFFRVHPC 1480
F +++ +Y E G H C
Sbjct: 350 TTFQQMWISKQEYDESGPSIVH-HKC 374
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 375
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D +V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 3 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 60
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R
Sbjct: 61 KRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANR 116
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + P++ I ++ S +G +GV++ G TH +P+ G
Sbjct: 117 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGVVLDSGDGVTHTVPIYEGYALPHA 174
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHL 1092
R+DL G + +L K+L + S T + E++ D +VA D+ + +
Sbjct: 175 ILRLDLAGRDLTDYLMKILTERG----YSFTTTAEREIVRDIKEKLCYVALDFEQEM 227
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + +G ER PE +FQPS LG AGI ET + I +
Sbjct: 234 SSLEKSYEL--PDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKQEYDESG 366
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|G Chain G, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 3 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKD--SYVGDEAQSKRGI- 59
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
L+ + +VT++D E+I+ + F + L + E HP++LTE +NP +R M++
Sbjct: 60 LTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPMNPKSNREKMTQ 116
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP+ I ++ S +G +G+++ G THV+P+ G RID
Sbjct: 117 IMFETFNVPAFYVSIQAVLSLYSSGR--TTGIVLDSGDGNTHVVPIYAGFSLPHAILRID 174
Query: 1045 LGGFSVIHHLHKLL 1058
L G + +L K+L
Sbjct: 175 LAGRDLTDYLMKIL 188
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+S+ + EL + + IG ER PE LF PS+LG AGI +T + + +
Sbjct: 229 SSIEKSYEL--PDGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRK 286
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L NI ++G PG ER+ K++ P S V + PE W G +
Sbjct: 287 ELYGNIVMSGGTTMFPGIAERMQKEITALAP--SSMKVKIIAPPERKYSVWIGGSILASL 344
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 345 TTFQQMWISKQEYDESG 361
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5N|C Chain C, Crystal Structure Of A Dictyostelium P109a Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 375
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 116/229 (50%), Gaps = 14/229 (6%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 65 LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAALNPKANREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVSHTVPIYEGYALPHAILRLD 179
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + ++ K+L + S + + ++ +VA D+ ++
Sbjct: 180 LAGRDLTDYMMKILTERGYSFTTTAAAAIVRDIKEKLAYVALDFEAEMQ 228
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
++L + EL + + IG ER PE LFQPS LG AGI ET + I +
Sbjct: 234 SALEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N+ ++G PG +R+NK+L P S + + PE W G +
Sbjct: 292 DLYGNVVLSGGTTMFPGIADRMNKELTALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKEEYDESG 366
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin
pdb|2OAN|B Chain B, Structure Of Oxidized Beta-Actin
pdb|2OAN|C Chain C, Structure Of Oxidized Beta-Actin
pdb|2OAN|D Chain D, Structure Of Oxidized Beta-Actin
Length = 375
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 22/239 (9%)
Query: 864 LRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDI 918
+ D +V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEA 58
Query: 919 SNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNY 977
+ + LK + +VT++D E+I+ + F + L + E HP++LTE LNP
Sbjct: 59 QSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKA 114
Query: 978 SRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDA 1037
+R M++++FE + P++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 115 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVTHTVPIYEGYALP 172
Query: 1038 SKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYG----FVATDYREHL 1092
R+DL G + +L K+L + S T + E++ D +VA D+ + +
Sbjct: 173 HAILRLDLAGRDLTDYLMKILTERG----YSFTTTAEREIVRDIKEKLCYVALDFEQEM 227
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS LG GI ET + I +
Sbjct: 234 SSLEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESXGIHETTFNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKQEYDESG 366
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D
Length = 375
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 105/201 (52%), Gaps = 14/201 (6%)
Query: 864 LRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDI 918
+ D +V DNG+ C+ G+A + P +F +++ +PR G+KD + VG++
Sbjct: 1 MGDEVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD--SYVGDEA 58
Query: 919 SNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNY 977
+ + LK + +VT++D E+I+ + F + L + E HP++LTE LNP
Sbjct: 59 QSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKA 114
Query: 978 SRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDA 1037
+R M++++FE + P++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 115 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHTVPIYEGYALP 172
Query: 1038 SKAKRIDLGGFSVIHHLHKLL 1058
R+DL G + +L K+L
Sbjct: 173 HAILRLDLAGRDLTDYLMKIL 193
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
++L + EL + + IG ER PE LFQPS LG AGI ET + I +
Sbjct: 234 SALEKSYEL--PDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N+ ++G PG +R+ K+L P S + + PE W G +
Sbjct: 292 DLYGNVVLSGGTTMFPGIADRMQKELTALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKEEYDESG 366
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human
Gelsolin Segment 1
Length = 375
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
L+ + +VT++D E+I+ + F + L + E HP++LTE +NP +R M++
Sbjct: 65 LTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPMNPKSNREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP+ I ++ S +G +G+++ G THV+P+ G RID
Sbjct: 122 IMFETFNVPAFYVSIQAVLSLYSSGR--TTGIVLDSGDGNTHVVPIYAGFSLPHAILRID 179
Query: 1045 LGGFSVIHHLHKLL 1058
L G + +L K+L
Sbjct: 180 LAGRDLTDYLMKIL 193
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+S+ + EL + + IG ER PE LF PS+LG AGI +T + + +
Sbjct: 234 SSIEKSYEL--PDGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L NI ++G PG ER+ K++ P S V + PE W G +
Sbjct: 292 ELYGNIVMSGGTTMFPGIAERMQKEITALAP--SSMKVKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKGGEFFRVHPC 1480
F +++ +Y E G H C
Sbjct: 350 TTFQQMWISKQEYDESGPSIVH-HKC 374
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A
Length = 375
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 22/239 (9%)
Query: 864 LRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDI 918
+ D +V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEA 58
Query: 919 SNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNY 977
+ + LK + +VT++D E+I+ + F + L + E HP++LTE LNP
Sbjct: 59 QSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKA 114
Query: 978 SRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDA 1037
+R M++++FE + P++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 115 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVTHTVPIYEGYALP 172
Query: 1038 SKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHL 1092
R+DL G + +L K+L + S T + E++ D +VA D+ + +
Sbjct: 173 HAILRLDLAGRDLTDYLMKILTERG----YSFTTTAEREIVRDIKEKLCYVALDFEQEM 227
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS LG GI ET + I +
Sbjct: 234 SSLEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKQEYDESG 366
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|M Chain M, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 104/194 (53%), Gaps = 14/194 (7%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 3 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 59
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 60 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQ 116
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 117 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVTHTVPIYEGYALPHAILRLD 174
Query: 1045 LGGFSVIHHLHKLL 1058
L G + +L K+L
Sbjct: 175 LAGRDLTDYLMKIL 188
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS LG GI ET + I +
Sbjct: 229 SSLEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 286
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 287 DLYANTVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 344
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 345 STFQQMWISKQEYDESG 361
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin
pdb|1HLU|A Chain A, Structure Of Bovine Beta-Actin-Profilin Complex With Actin
Bound Atp Phosphates Solvent Accessible
Length = 375
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D +V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 60
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R
Sbjct: 61 KRGI-LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANR 116
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + P++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 117 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVTHTVPIYEGYALPHA 174
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHL 1092
R+DL G + +L K+L + S T + E++ D +VA D+ + +
Sbjct: 175 ILRLDLAGRDLTDYLMKILTERG----YSFTTTAEREIVRDIKEKLCYVALDFEQEM 227
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS LG GI ET + I +
Sbjct: 234 SSLEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKQEYDESG 366
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex
pdb|3LUE|A Chain A, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|B Chain B, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|C Chain C, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|D Chain D, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|E Chain E, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|F Chain F, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|G Chain G, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|H Chain H, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|I Chain I, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|J Chain J, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3J0S|A Chain A, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|B Chain B, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|C Chain C, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|D Chain D, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|E Chain E, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|F Chain F, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|G Chain G, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|H Chain H, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|I Chain I, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|J Chain J, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|K Chain K, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|L Chain L, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3UB5|A Chain A, Profilin:actin With A Wide Open Nucleotide Cleft
Length = 374
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D +V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 2 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 59
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R
Sbjct: 60 KRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANR 115
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + P++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 116 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVTHTVPIYEGYALPHA 173
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHL 1092
R+DL G + +L K+L + S T + E++ D +VA D+ + +
Sbjct: 174 ILRLDLAGRDLTDYLMKILTERG----YSFTTTAEREIVRDIKEKLCYVALDFEQEM 226
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS LG GI ET + I +
Sbjct: 233 SSLEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK 290
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 291 DLYANTVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 348
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 349 STFQQMWISKQEYDESG 365
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA
Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN
Complex With Human Gelsolin Segment 1
Length = 375
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 119/235 (50%), Gaps = 22/235 (9%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 65 LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVSHTVPIYEGYALPHAILRLD 179
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHLRKW 1095
L G + ++ K+L + S T + E++ D +VA D+ ++ +
Sbjct: 180 LAGRDLTDYMMKILTERG----YSFTTTAEREIVRDIKEKLAYVALDFEAEMKAY 230
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 1335 EFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHI 1394
E ++L + EL + + IG ER PE LFQPS LG AGI ET + I
Sbjct: 232 ESSALEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDI 289
Query: 1395 AQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFS 1452
+ L N+ ++G PG +R+NK+L P S + + PE W G +
Sbjct: 290 RKDLYGNVVLSGGTTMFPGIADRMNKELTALAP--STMKIKIIAPPERKYSVWIGGSILA 347
Query: 1453 LSENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 348 SLSTFQQMWISKHEYDESG 366
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1
And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228:
Q228kT229AA230YE360H)
Length = 375
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 119/235 (50%), Gaps = 22/235 (9%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 65 LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVSHTVPIYEGYALPHAILRLD 179
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHLRKW 1095
L G + ++ K+L + S T + E++ D +VA D+ ++ +
Sbjct: 180 LAGRDLTDYMMKILTERG----YSFTTTAEREIVRDIKEKLAYVALDFEAEMKAY 230
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
++L + EL + + IG ER PE LFQPS LG AGI ET + I +
Sbjct: 234 SALEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N+ ++G PG +R+NK+L P S + + PE W G +
Sbjct: 292 DLYGNVVLSGGTTMFPGIADRMNKELTALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKHEYDESG 366
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex
Length = 374
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 32/229 (13%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 7 LVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 63
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + ++T++D E+I+ ++F + L + E HP +LTE LNP +R M++
Sbjct: 64 LTLKYPIEXGIITNWDDMEKIWHHSFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQ 120
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 121 IMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 178
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + +L K+L + Y FV T RE +R
Sbjct: 179 LAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 209
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 233 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 290
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 291 DLYANNVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 348
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 349 STFQQMWISKQEYDEAG 365
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin
With Gelsolin
Length = 375
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 22/233 (9%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD--SXVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 65 LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVSHTVPIYEGYALPHAILRLD 179
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHLR 1093
L G + ++ K+L + S T + E++ D +VA D+ ++
Sbjct: 180 LAGRDLTDYMMKILTERG----YSFTTTAEREIVRDIKEKLAYVALDFEAEMQ 228
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
++L + EL + + IG ER PE LFQPS LG AGI ET + I +
Sbjct: 234 SALEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N+ ++G PG +R+NK+L P S + + PE W G +
Sbjct: 292 DLYGNVVLSGGTTMFPGIADRMNKELTALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKEEYDESG 366
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin
Complexed With Ca Atp And Human Gelsolin Segment 1
pdb|1NM1|A Chain A, Crystal Structure Of D. Dicsoideum Actin Complexed With
Gelsolin Segment 1 And Mg Atp At 1.8 A Resolution
pdb|1NMD|A Chain A, Crystal Structure Of D. Discoideum Actin-Gelsolin Segment 1
Complex Crystallized In Presence Of Lithium Atp
Length = 375
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 118/232 (50%), Gaps = 22/232 (9%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVSHTVPIYEGYALPHAILRLD 179
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHL 1092
L G + ++ K+L + S T + E++ D +VA D+ + +
Sbjct: 180 LAGRDLTDYMMKILTERG----YSFTTTAEREIVRDIKEKLAYVALDFEQEM 227
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 17/151 (11%)
Query: 1336 FTSLNQEQELSPKEANQ-------------LHIGVERMCGPECLFQPSMLGSIQAGISET 1382
+ +L+ EQE++ ++ + IG ER PE LFQPS LG AGI ET
Sbjct: 218 YVALDFEQEMATAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHET 277
Query: 1383 LNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE- 1441
+ I + L N+ ++G PG +R+NK+L P S + + PE
Sbjct: 278 TYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAP--STMKIKIIAPPER 335
Query: 1442 -LDAWSGARQFSLSENFHDFAVTQSDYQEKG 1471
W G + F +++ +Y E G
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKEEYDESG 366
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State
pdb|2HF4|A Chain A, Crystal Structure Of Monomeric Actin In Its Atp-Bound State
pdb|3MN7|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN9|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MMV|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|F Chain F, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|K Chain K, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
Length = 374
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 22/232 (9%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 7 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 63
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 64 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQ 120
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 121 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 178
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHL 1092
L G + +L K+L + S T + E++ D +VA D+ + +
Sbjct: 179 LAGRDLTDYLMKILTERG----YSFTTTEEREIVRDIKEKLCYVALDFEQEM 226
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL K+ + IG ER PE LFQPS LG GI ET + I +
Sbjct: 233 SSLEKSYEL--KDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRK 290
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 291 DLYANTVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 348
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 349 STFQQMWISKQEYDESG 365
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And
The Last Poly-Pro Of Human Vasp
pdb|3CIP|A Chain A, Complex Of Dictyostelium Discoideum Actin With Gelsolin
Length = 375
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 22/233 (9%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR G+KD + VG++ + +
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 65 LTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVSHTVPIYEGYALPHAILRLD 179
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHLR 1093
L G + ++ K+L + S T + E++ D +VA D+ ++
Sbjct: 180 LAGRDLTDYMMKILTERG----YSFTTTAEREIVRDIKEKLAYVALDFEAEMQ 228
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
++L + EL + + IG ER PE LFQPS LG AGI ET + I +
Sbjct: 234 SALEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N+ ++G PG +R+NK+L P S + + PE W G +
Sbjct: 292 DLYGNVVLSGGTTMFPGIADRMNKELTALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKEEYDESG 366
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D
pdb|3EKU|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D
pdb|3EL2|A Chain A, Crystal Structure Of Monomeric Actin Bound To Ca-Atp
Length = 375
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 22/232 (9%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ C+ G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 64
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + +VT++D E+I+ + F + L + E HP++LTE LNP +R M++
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQ 121
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + P++ I ++ S +G +G+++ G +H +P+ G R+D
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 179
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHL 1092
L G + +L K+L + S T + E++ D +VA D+ + +
Sbjct: 180 LAGRDLTDYLMKILTERG----YSFTTTEEREIVRDIKEKLCYVALDFEQEM 227
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL K+ + IG ER PE LFQPS LG GI ET + I +
Sbjct: 234 SSLEKSYEL--KDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANTVLSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 350 STFQQMWISKQEYDESG 366
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex
With Gelsolin Segment 1
Length = 368
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 117/228 (51%), Gaps = 19/228 (8%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKT 930
+V DNG+ C+ G+A + P +F +++ +PR GK ++ VG++ + + LK
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-HTGK---DSYVGDEAQSKRGI-LTLKY 62
Query: 931 QFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFEC 989
+ +VT++D E+I+ + F + L + E HP++LTE LNP +R M++++FE
Sbjct: 63 PIEXGIVTNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFET 119
Query: 990 YQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFS 1049
+ P++ I ++ S +G +G+++ G +H +P+ G R+DL G
Sbjct: 120 FNTPAMYVAIQAVLSLYASGR--TTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 177
Query: 1050 VIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATDYREHLR 1093
+ ++ K+L + S T + E++ D +VA D+ ++
Sbjct: 178 LTDYMMKILTERG----YSFTTTAEREIVRDIKEKLAYVALDFEAEMQ 221
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
++L + EL + + IG ER PE LFQPS LG AGI ET + I +
Sbjct: 227 SALEKSYEL--PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRK 284
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N+ ++G PG +R+NK+L P S + + PE W G +
Sbjct: 285 DLYGNVVLSGGTTMFPGIADRMNKELTALAP--STMKIKIIAPPERKYSVWIGGSILASL 342
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +++ +Y E G
Sbjct: 343 STFQQMWISKEEYDESG 359
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex
Length = 373
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 4 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 61
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 62 KRGI-LTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 117
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 118 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 175
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 176 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 211
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 235 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 292
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 293 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 350
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 351 STFQQMWITKQEYDEAG 367
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|E Chain E, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|F Chain F, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|G Chain G, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|H Chain H, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|I Chain I, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|J Chain J, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|K Chain K, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|L Chain L, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|M Chain M, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|N Chain N, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|O Chain O, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|P Chain P, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|Q Chain Q, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|R Chain R, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|S Chain S, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W4U|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|E Chain E, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|F Chain F, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|G Chain G, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|H Chain H, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|I Chain I, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|J Chain J, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|K Chain K, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|L Chain L, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|M Chain M, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|N Chain N, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|O Chain O, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|P Chain P, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|Q Chain Q, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|R Chain R, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|S Chain S, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
Length = 372
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 60
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 61 KRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 116
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 117 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 174
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 175 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 210
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 234 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 350 STFQQMWITKQEYDEAG 366
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide
pdb|3M6G|B Chain B, Crystal Structure Of Actin In Complex With Lobophorolide
Length = 371
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 60
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 61 KRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 116
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 117 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 174
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 175 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 210
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 234 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 350 STFQQMWITKQEYDEAG 366
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|P Chain P, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|Q Chain Q, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|R Chain R, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|S Chain S, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|T Chain T, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|U Chain U, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|V Chain V, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|W Chain W, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|X Chain X, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|Y Chain Y, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|Z Chain Z, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
Length = 376
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 4 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 61
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 62 KRGI-LTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 117
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 118 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 175
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 176 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 211
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 235 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 292
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 293 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 350
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 351 STFQQMWITKQEYDEAG 367
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C
pdb|1QZ6|A Chain A, Structure Of Rabbit Actin In Complex With Jaspisamide A
pdb|1S22|A Chain A, Absolute Stereochemistry Of Ulapualide A
pdb|1Y64|A Chain A, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
pdb|1YXQ|A Chain A, Crystal Structure Of Actin In Complex With Swinholide A
pdb|1YXQ|B Chain B, Crystal Structure Of Actin In Complex With Swinholide A
pdb|2A3Z|A Chain A, Ternary Complex Of The Wh2 Domain Of Wasp With Actin-Dnase I
pdb|2A40|A Chain A, Ternary Complex Of The Wh2 Domain Of Wave With Actin-Dnase I
pdb|2A40|D Chain D, Ternary Complex Of The Wh2 Domain Of Wave With Actin-Dnase I
pdb|2A41|A Chain A, Ternary Complex Of The Wh2 Domain Of Wip With Actin-Dnase I
pdb|2A42|A Chain A, Actin-Dnase I Complex
pdb|2ASO|A Chain A, Structure Of Rabbit Actin In Complex With Sphinxolide B
pdb|1WUA|A Chain A, The Structure Of Aplyronine A-Actin Complex
pdb|2FXU|A Chain A, X-Ray Structure Of Bistramide A- Actin Complex At 1.35 A
Resolution.
pdb|2D1K|A Chain A, Ternary Complex Of The Wh2 Domain Of Mim With Actin-Dnase I
pdb|2HMP|A Chain A, Uncomplexed Actin Cleaved With Protease Ecp32
pdb|2HMP|B Chain B, Uncomplexed Actin Cleaved With Protease Ecp32
pdb|2Q0U|A Chain A, Structure Of Pectenotoxin-2 And Latrunculin B Bound To Actin
pdb|1J6Z|A Chain A, Uncomplexed Actin
pdb|1LOT|B Chain B, Crystal Structure Of The Complex Of Actin With Vitamin
D-Binding Protein
pdb|1MA9|B Chain B, Crystal Structure Of The Complex Of Human Vitamin D Binding
Protein And Rabbit Muscle Actin
pdb|1NWK|A Chain A, Crystal Structure Of Monomeric Actin In The Atp State
pdb|2Q97|A Chain A, Complex Of Mammalian Actin With Toxofilin From Toxoplasma
Gondii
pdb|2PAV|A Chain A, Ternary Complex Of Profilin-Actin With The Last Poly-Pro Of
Human Vasp
pdb|2VCP|A Chain A, Crystal Structure Of N-wasp Vc Domain In Complex With
Skeletal Actin
pdb|2VCP|B Chain B, Crystal Structure Of N-wasp Vc Domain In Complex With
Skeletal Actin
pdb|2ZWH|A Chain A, Model For The F-Actin Structure
pdb|3HBT|A Chain A, The Structure Of Native G-Actin
pdb|3M3N|A Chain A, Structure Of A Longitudinal Actin Dimer Assembled By Tandem
W Domains
pdb|3M3N|B Chain B, Structure Of A Longitudinal Actin Dimer Assembled By Tandem
W Domains
pdb|3M1F|A Chain A, Crosslinked Complex Of Actin With First W Domain Of Vibrio
Parahaemolyticus Vopl
pdb|3MFP|A Chain A, Atomic Model Of F-Actin Based On A 6.6 Angstrom Resolution
Cryoem Map
pdb|4A7F|A Chain A, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7F|D Chain D, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7F|E Chain E, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7F|F Chain F, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7F|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7H|A Chain A, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7H|D Chain D, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7H|E Chain E, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7H|F Chain F, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7H|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7L|A Chain A, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7L|D Chain D, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7L|E Chain E, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7L|F Chain F, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7L|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7N|A Chain A, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4A7N|B Chain B, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4A7N|C Chain C, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4A7N|D Chain D, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4A7N|E Chain E, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4H03|B Chain B, Crystal Structure Of Nad+-ia-actin Complex
Length = 375
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 60
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 61 KRGI-LTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 116
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 117 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 174
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 175 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 210
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 234 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 350 STFQQMWITKQEYDEAG 366
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In
Complex With Skeletal Actin
pdb|1M8Q|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1H1V|A Chain A, Gelsolin G4-G6ACTIN COMPLEX
pdb|1RDW|X Chain X, Actin Crystal Dynamics: Structural Implications For F-Actin
Nucleation, Polymerization And Branching Mediated By The
Anti-Parallel Dimer
pdb|1RFQ|A Chain A, Actin Crystal Dynamics: Structural Implications For F-Actin
Nucleation, Polymerization And Branching Mediated By The
Anti-Parallel Dimer
pdb|1RFQ|B Chain B, Actin Crystal Dynamics: Structural Implications For F-Actin
Nucleation, Polymerization And Branching Mediated By The
Anti-Parallel Dimer
pdb|2A5X|A Chain A, Crystal Structure Of A Cross-Linked Actin Dimer
pdb|2ASM|A Chain A, Structure Of Rabbit Actin In Complex With Reidispongiolide A
pdb|2ASP|A Chain A, Structure Of Rabbit Actin In Complex With Reidispongiolide C
pdb|2FF3|B Chain B, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif
Hybrid In Complex With Actin
pdb|2FF6|A Chain A, Crystal Structure Of Gelsolin Domain 1:ciboulot Domain 2
Hybrid In Complex With Actin
pdb|2Q1N|A Chain A, Actin Dimer Cross-Linked Between Residues 41 And 374
pdb|2Q1N|B Chain B, Actin Dimer Cross-Linked Between Residues 41 And 374
pdb|2Q31|A Chain A, Actin Dimer Cross-linked Between Residues 41 And 374 And
Proteolytically Cleaved By Subtilisin Between Residues 47
And 48.
pdb|2Q31|B Chain B, Actin Dimer Cross-linked Between Residues 41 And 374 And
Proteolytically Cleaved By Subtilisin Between Residues 47
And 48.
pdb|2Q36|A Chain A, Actin Dimer Cross-Linked Between Residues 191 And 374 And
Complexed With Kabiramide C
pdb|2Q0R|A Chain A, Structure Of Pectenotoxin-2 Bound To Actin
pdb|3BUZ|B Chain B, Crystal Structure Of Ia-Btad-Actin Complex
pdb|2Y83|O Chain O, Actin Filament Pointed End
pdb|2Y83|P Chain P, Actin Filament Pointed End
pdb|2Y83|Q Chain Q, Actin Filament Pointed End
pdb|2Y83|R Chain R, Actin Filament Pointed End
pdb|2Y83|S Chain S, Actin Filament Pointed End
pdb|2Y83|T Chain T, Actin Filament Pointed End
pdb|3TPQ|A Chain A, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3TPQ|B Chain B, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3TPQ|C Chain C, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3TPQ|D Chain D, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3TPQ|E Chain E, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3SJH|A Chain A, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp- Latrunculin A
pdb|3U8X|A Chain A, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U8X|C Chain C, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U9D|A Chain A, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-24) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 13-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U9D|C Chain C, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-24) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 13-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U9Z|A Chain A, Crystal Structure Between Actin And A Protein Construct
Containing The First Beta-Thymosin Domain Of Drosophila
Ciboulot (Residues 2-58) With The Three Mutations
N26dQ27KD28S
pdb|3UE5|A Chain A, Ecp-Cleaved Actin In Complex With Spir Domain D
pdb|4GY2|B Chain B, Crystal Structure Of Apo-ia-actin Complex
pdb|4H0T|B Chain B, Crystal Structure Of Ia-adpr-actin Complex
pdb|4H0V|B Chain B, Crystal Structure Of Nad+-ia(e378s)-actin Complex
pdb|4H0X|B Chain B, Crystal Structure Of Nad+-ia(e380a)-actin Complex
pdb|4H0Y|B Chain B, Crystal Structure Of Nad+-ia(e380s)-actin Complex
Length = 375
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 60
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 61 KRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 116
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 117 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 174
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 175 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 210
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 234 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 350 STFQQMWITKQEYDEAG 366
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Domain 1
pdb|1ESV|A Chain A, Complex Between Latrunculin A:rabbit Muscle Alpha
Actin:human Gelsolin Domain 1
pdb|1MDU|B Chain B, Crystal Structure Of The Chicken Actin Trimer Complexed With
Human Gelsolin Segment 1 (Gs-1)
pdb|1MDU|E Chain E, Crystal Structure Of The Chicken Actin Trimer Complexed With
Human Gelsolin Segment 1 (Gs-1)
pdb|2PBD|A Chain A, Ternary Complex Of Profilin-Actin With The Poly-Pro-Gab
Domain Of Vasp
Length = 377
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 62
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 63 KRGI-LTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 118
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 176
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 177 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 212
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 236 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 293
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 294 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 351
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 352 STFQQMWITKQEYDEAG 368
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin
pdb|4B1V|B Chain B, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin
pdb|4B1Z|A Chain A, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|B Chain B, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|C Chain C, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|D Chain D, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|E Chain E, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|F Chain F, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
Length = 376
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 4 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 61
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 62 KRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 117
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 118 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 175
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 176 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 211
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 235 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 292
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 293 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 350
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 351 STFQQMWITKQEYDEAG 367
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit
Skeletal Muscle Actin And Latrunculin A At 2.85 A
Resolution
pdb|1IJJ|B Chain B, The X-Ray Crystal Structure Of The Complex Between Rabbit
Skeletal Muscle Actin And Latrunculin A At 2.85 A
Resolution
pdb|1P8Z|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Residues Val26-Glu156
pdb|1SQK|A Chain A, Crystal Structure Of Ciboulot In Complex With Skeletal Actin
pdb|1RGI|A Chain A, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
pdb|3CJB|A Chain A, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Gelsolin-Segment 1
pdb|3CJC|A Chain A, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Dnase I And Gelsolin-Segment 1
pdb|3B5U|A Chain A, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|B Chain B, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|C Chain C, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|D Chain D, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|E Chain E, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|F Chain F, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|G Chain G, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|H Chain H, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|I Chain I, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|J Chain J, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|K Chain K, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|L Chain L, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|M Chain M, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|N Chain N, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3DAW|A Chain A, Structure Of The Actin-Depolymerizing Factor Homology Domain
In Complex With Actin
pdb|2V51|B Chain B, Structure Of Mal-Rpel1 Complexed To Actin
pdb|2V51|D Chain D, Structure Of Mal-Rpel1 Complexed To Actin
pdb|2V52|B Chain B, Structure Of Mal-Rpel2 Complexed To G-Actin
pdb|2VYP|A Chain A, Rabbit-Muscle G-Actin In Complex With Myxobacterial
Rhizopodin
pdb|2VYP|B Chain B, Rabbit-Muscle G-Actin In Complex With Myxobacterial
Rhizopodin
pdb|3FFK|B Chain B, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|E Chain E, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|2YJE|A Chain A, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJE|B Chain B, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJE|C Chain C, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|A Chain A, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|B Chain B, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|C Chain C, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|D Chain D, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|E Chain E, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|3TU5|A Chain A, Actin Complex With Gelsolin Segment 1 Fused To Cobl Segment
pdb|4EAH|D Chain D, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|H Chain H, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|G Chain G, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|F Chain F, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 377
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISN 920
D + +V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ +
Sbjct: 5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQS 62
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSR 979
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 63 KRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANR 118
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHA 176
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
R+DL G + +L K+L + Y FV T RE +R
Sbjct: 177 IMRLDLAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 212
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 236 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 293
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 294 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 351
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 352 STFQQMWITKQEYDEAG 368
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|H Chain H, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|J Chain J, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|K Chain K, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|N Chain N, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 32/229 (13%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 3 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 59
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R M++
Sbjct: 60 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQ 116
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 117 IMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 174
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + +L K+L + Y FV T RE +R
Sbjct: 175 LAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 205
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 229 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 286
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 287 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 344
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 345 STFQQMWITKQEYDEAG 361
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form
pdb|2GWK|A Chain A, Spvb Adp-Ribosylated Actin: Orthorhombic Crystal Form
pdb|2GWK|B Chain B, Spvb Adp-Ribosylated Actin: Orthorhombic Crystal Form
Length = 371
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 32/229 (13%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 4 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 60
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R M++
Sbjct: 61 LTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQ 117
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 118 IMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 175
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + +L K+L + Y FV T RE +R
Sbjct: 176 LAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 206
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 230 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 287
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 288 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 345
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 346 STFQQMWITKQEYDEAG 362
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4:
Implications For Arp23 ACTIVATION
Length = 370
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 32/229 (13%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 3 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 59
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R M++
Sbjct: 60 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQ 116
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 117 IMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 174
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + +L K+L + Y FV T RE +R
Sbjct: 175 LAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 205
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 229 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 286
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 287 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 344
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 345 STFQQMWITKQEYDEAG 361
>pdb|1NVP|D Chain D, Human TfiiaTBPDNA COMPLEX
Length = 108
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/67 (67%), Positives = 56/67 (83%), Gaps = 1/67 (1%)
Query: 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSG 61
+YQLYRNTTLGN+LQESLDELIQ ITP LA++VLLQFDK+IN AL +V++R+ F+ G
Sbjct: 1 AYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR-G 59
Query: 62 KLNTFLF 68
LNT+ F
Sbjct: 60 SLNTYRF 66
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Query: 1484 KVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACD 1533
+V++R+ F+ G LNTYRFCDNVWTFVL DVEFREV E+ +V+K+KIVACD
Sbjct: 50 RVRNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACD 98
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That
Nucleates Filament Assembly: Crystal Structure At 3.5 A
Resolution
pdb|1LCU|B Chain B, Polylysine Induces An Antiparallel Actin Dimer That
Nucleates Filament Assembly: Crystal Structure At 3.5 A
Resolution
Length = 371
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 28/227 (12%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK---KDGETQVGNDISNIEAVRFQ 927
+V DNG+ + G+A + P +F +++ +PR + G++ VG++ + +
Sbjct: 4 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQGDSYVGDEAQSKRGI-LT 62
Query: 928 LKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELL 986
LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R M++++
Sbjct: 63 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQIM 119
Query: 987 FECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLG 1046
FE + VP++ I ++ S +G +G+++ G TH +P+ G R+DL
Sbjct: 120 FETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 177
Query: 1047 GFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
G + +L K+L + Y FV T RE +R
Sbjct: 178 GRDLTDYLMKILTER------------------GYSFVTTAEREIVR 206
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 230 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 287
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 288 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 345
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 346 STFQQMWITKQEYDEAG 362
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
Length = 394
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 13/198 (6%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQ-----VGNDISNIEAVR 925
+V DNG + G+A P IF +L+ +P K G + VG++ S + ++
Sbjct: 9 VVCDNGTGFVKCGYAGSNFPEHIFPSLVGRPIIRSTTKVGNIEIKDLMVGDEASELRSM- 67
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAFS--HLSINTEGNVNHPIVLTEPFLNPNYSRSLMS 983
++ + +V ++D + ++DY F L+I+T N I+LTEP +NP +R +
Sbjct: 68 LEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTR---NCKILLTEPPMNPTKNREKIV 124
Query: 984 ELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRI 1043
E++FE YQ V I ++ + G +GV++ G TH+ PV G +R+
Sbjct: 125 EVMFETYQFSGVYVAIQAVLTLYAQGL--LTGVVVDSGDGVTHICPVYEGFSLPHLTRRL 182
Query: 1044 DLGGFSVIHHLHKLLQLK 1061
D+ G + +L KLL L+
Sbjct: 183 DIAGRDITRYLIKLLLLR 200
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 1353 LHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLP 1412
+ +G ER PE LFQP ++ G++E L + + +I ++G P
Sbjct: 252 IKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYP 311
Query: 1413 GFVERLNKDLLE---NRPFQ------SHFSVSLAENPE---LDAWSGARQFSLSENFHDF 1460
G RL ++L + R + S F + + + P + GA + ++ +F
Sbjct: 312 GLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNF 371
Query: 1461 AVTQSDYQEKG 1471
+T+ +YQEKG
Sbjct: 372 WMTRQEYQEKG 382
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|B Chain B, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|B Chain B, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9L|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|B Chain B, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|B Chain B, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|B Chain B, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|B Chain B, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|B Chain B, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|B Chain B, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|B Chain B, Structure Of Bos Taurus Arp2/3 Complex With Bound Inhibitor
Ck-869 And Atp
Length = 394
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 9/196 (4%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQ-----VGNDISNIEAVR 925
+V DNG + G+A P IF L+ +P K G + VG++ S + ++
Sbjct: 9 VVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSM- 67
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSEL 985
++ + +V ++D + ++DY F +N + N I+LTEP +NP +R + E+
Sbjct: 68 LEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTR-NCKILLTEPPMNPTKNREKIVEV 126
Query: 986 LFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDL 1045
+FE YQ V I ++ + G +GV++ G TH+ PV G +R+D+
Sbjct: 127 MFETYQFSGVYVAIQAVLTLYAQGL--LTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDI 184
Query: 1046 GGFSVIHHLHKLLQLK 1061
G + +L KLL L+
Sbjct: 185 AGRDITRYLIKLLLLR 200
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 1353 LHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLP 1412
+ +G ER PE LFQP ++ G++E L + + +I ++G P
Sbjct: 252 IKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYP 311
Query: 1413 GFVERLNKDLLE---NRPFQ------SHFSVSLAENPE---LDAWSGARQFSLSENFHDF 1460
G RL ++L + R + S F + + + P + GA + ++ +F
Sbjct: 312 GLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNF 371
Query: 1461 AVTQSDYQEKG 1471
+T+ +YQEKG
Sbjct: 372 WMTRQEYQEKG 382
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 357
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 33/229 (14%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 58
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R M++
Sbjct: 59 LTLKYPIE-GIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQ 114
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 115 IMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 172
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + +L K+L + Y FV T RE +R
Sbjct: 173 LAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 203
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 227 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 284
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 285 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 342
Query: 1455 ENFHDFAVTQSDYQE 1469
F +T+ +Y E
Sbjct: 343 STFQQMWITKQEYDE 357
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 364
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 33/229 (14%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 3 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 59
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R M++
Sbjct: 60 LTLKYPIE-GIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQ 115
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 116 IMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 173
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + +L K+L + Y FV T RE +R
Sbjct: 174 LAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 204
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 228 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 285
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 286 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 343
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 344 STFQQMWITKQEYDEAG 360
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 357
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 33/229 (14%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE-----RGKKDGETQVGNDISNIEAVR 925
+V DNG+ + G+A + P +F +++ +PR + G+KD + VG++ + +
Sbjct: 4 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD--SYVGDEAQSKRGI- 60
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R M++
Sbjct: 61 LTLKYPIE-GIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQ 116
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 117 IMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 174
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + +L K+L + Y FV T RE +R
Sbjct: 175 LAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 205
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 229 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 286
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 287 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 344
Query: 1455 ENFHDFAVTQSDY 1467
F +T+ +Y
Sbjct: 345 STFQQMWITKQEY 357
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
Length = 359
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 38/229 (16%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVR 925
D + +V DNG+ + G+A + P +F +++ + E K G
Sbjct: 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRVGDEAQSKRG--------------I 48
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R M++
Sbjct: 49 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQ 105
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
++FE + VP++ I ++ S +G +G+++ G TH +P+ G R+D
Sbjct: 106 IMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 163
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLR 1093
L G + +L K+L + Y FV T RE +R
Sbjct: 164 LAGRDLTDYLMKILTER------------------GYSFVTTAEREIVR 194
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+SL + EL + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 218 SSLEKSYEL--PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 275
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 276 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 333
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 334 STFQQMWITKQEYDEAG 350
>pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
Exoribonuclease Involved In Structured Rna Processing
Length = 375
Score = 78.6 bits (192), Expect = 4e-14, Method: Composition-based stats.
Identities = 67/256 (26%), Positives = 113/256 (44%), Gaps = 9/256 (3%)
Query: 323 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 382
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 441
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 442 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 501
Y V DK+ DW RPL E +YA D YLL + KL + A G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETEASG----WLP 177
Query: 502 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 561
+ + +++ ++ V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 562 YVLPNHMLLQMAQSIP 577
+V+ L +A+ +P
Sbjct: 237 FVVREEHLWSVARYMP 252
Score = 62.8 bits (151), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 1768 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 1827
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 1886
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 1887 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 1923
Y V DK+ DW RPL E +YA D YLL
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL 160
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|B Chain B, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 427
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 869 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIA--------------KPR-----------K 903
+PI+ DNG ++G+A + P+ +F +IA KP
Sbjct: 6 VPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSS 65
Query: 904 ERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYA-FSHLSINTEGNV 962
+R +D + +GND + + L + ++D E+ + + F +L E
Sbjct: 66 KRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE--- 122
Query: 963 NHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQ-------SG 1015
+H +LTEP LNP +R +E++FE + + Y W +G
Sbjct: 123 DHYFLLTEPPLNPPENRENTAEIMFESFNCAGL-YIAVQAVLALAASWTSSKVTDRSLTG 181
Query: 1016 VIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQ 1059
++ G TH+IPV G + S K + L G V + + LL+
Sbjct: 182 TVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLR 225
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 1335 EFTSLNQEQELSPKEANQ--------LHIGVERMCGPECLFQPSMLGS-IQAGISETLNF 1385
EF+ ++E + K A++ + +G ER PE F P + S + E ++
Sbjct: 254 EFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDN 313
Query: 1386 VLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDL---LENRPFQSHFSVSLAENPEL 1442
V+ S P + + L NI ++G F RL +DL ++ R +S +S A++ +
Sbjct: 314 VVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEM-LSGAKSGGV 372
Query: 1443 DA------------WSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPCSNNKV 1485
D W G + + F + T++DY+E G R + N +
Sbjct: 373 DVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQIFGNSL 427
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|A Chain A, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|A Chain A, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|A Chain A, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|A Chain A, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|A Chain A, Structure Of Bos Taurus Arp2/3 Complex With Bound Inhibitor
Ck-869 And Atp
Length = 418
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 25/207 (12%)
Query: 872 VFDNGAWCCRVGWASCEKPNLIFKNLIA-----------KPRKERGKKDGETQVGNDISN 920
V D G ++G+A +P I + IA + R +G D + +G++
Sbjct: 9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDE--A 66
Query: 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYA-FSHLSINTEGNVNHPIVLTEPFLNPNYSR 979
IE + K +V +D+ E+ + F +L E +H +LTEP LN +R
Sbjct: 67 IEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE---DHYFLLTEPPLNTPENR 123
Query: 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQ-------SGVIISCGYQCTHVIPVIN 1032
+E++FE + VP + Y W + +G +I G THVIPV
Sbjct: 124 EYTAEIMFESFNVPGL-YIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAE 182
Query: 1033 GCIDASKAKRIDLGGFSVIHHLHKLLQ 1059
G + S K I + G + + + +LL+
Sbjct: 183 GYVIGSCIKHIPIAGRDITYFIQQLLR 209
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 25/164 (15%)
Query: 1335 EFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLG-SIQAGISETLNFVLNSYPQH 1393
++T +N +S KE + + +G ER GPE F P ISE ++ V+ + P
Sbjct: 255 QYTGINA---ISKKEFS-IDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPID 310
Query: 1394 IAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVS-------LAENP------ 1440
+ + L NI ++G F RL +DL R + +S L P
Sbjct: 311 VRRPLYKNIVLSGGSTMFRDFGRRLQRDL--KRTVDARLKLSEELSGGRLKPKPIDVQVI 368
Query: 1441 -----ELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHP 1479
W G + + F+ T+ DY+E G R +P
Sbjct: 369 THHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP 412
>pdb|1RM1|B Chain B, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
Length = 122
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR +T+GN+L ++LD LI G I +LAM+VL FDK + L +S+LT K G
Sbjct: 7 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-GN 65
Query: 63 LNTFLF 68
L+T+ F
Sbjct: 66 LDTYGF 71
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 15/65 (23%)
Query: 1483 NKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEF------REVAE--------IARVNKLK 1528
+ +S+LT K G L+TY FCD+VWTF++ + + R+ ++ + V+KL+
Sbjct: 54 DNTQSKLTVK-GNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLR 112
Query: 1529 IVACD 1533
IVAC+
Sbjct: 113 IVACN 117
>pdb|1YTF|D Chain D, Yeast TfiiaTBPDNA COMPLEX
pdb|1NH2|D Chain D, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 121
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR +T+GN+L ++LD LI G I +LAM+VL FDK + L +S+LT K G
Sbjct: 6 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-GN 64
Query: 63 LNTFLF 68
L+T+ F
Sbjct: 65 LDTYGF 70
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 15/65 (23%)
Query: 1483 NKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEF------REVAE--------IARVNKLK 1528
+ +S+LT K G L+TY FCD+VWTF++ + + R+ ++ + V+KL+
Sbjct: 53 DNTQSKLTVK-GNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLR 111
Query: 1529 IVACD 1533
IVAC+
Sbjct: 112 IVACN 116
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 84/194 (43%), Gaps = 12/194 (6%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKD--GETQVGNDISNIEAVRFQL 928
+V D G++ +G++ + P I ++ K + G K E +G I ++L
Sbjct: 26 VVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIG-----IPRKDYEL 80
Query: 929 KTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLF 987
K + +V +D ++ + +A + L +N+ + P +LTEP N +R E+L
Sbjct: 81 KPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGI--PALLTEPVWNSTENRKKSLEVLL 138
Query: 988 ECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGG 1047
E Q CY + + +++ G+ V P+++G + +R + G
Sbjct: 139 EGMQF-EACYLAPTSTCVSFAAGRPNC-LVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAG 196
Query: 1048 FSVIHHLHKLLQLK 1061
+ H + K L+ K
Sbjct: 197 KFINHLIKKALEPK 210
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
+LA+N+ +TG +PG +RL +L + P ++ E +W G +
Sbjct: 412 TLAHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILTTGHTIERQYQSWLGGSILTSL 471
Query: 1455 ENFHDFAVTQSDYQEKGGE 1473
FH V + +Y+E G E
Sbjct: 472 GTFHQLWVGKKEYEEVGVE 490
>pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
Adolescentis
Length = 440
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 398 FHGADSDIKWLQKD----------FGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 447
F+ A D W+ D G+ +FDT A + L + R LA + +H+ +
Sbjct: 87 FNRAVGDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLT 146
Query: 448 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSR 507
K DW +RPLP YA D L+ + M+ +L GK F +
Sbjct: 147 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELK--RQGKMEWAQEEFDYA- 203
Query: 508 NICKLKYEKPVFNEE--GYMNIFRSHALLNNQQKYAL-RELYKWRDRIARDKDESTGYVL 564
LK E +M++ ++ ++Q A+ R L+ RD +AR+ D + +L
Sbjct: 204 ----LKEGLGPRKEHLIPWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLL 259
Query: 565 PNHMLLQMAQSIPRD 579
+ ++++A+ P +
Sbjct: 260 SDSSIIEVAKRKPHN 274
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 1843 FHGADSDIKWLQKD----------FGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVD 1892
F+ A D W+ D G+ +FDT A + L + R LA + +H+ +
Sbjct: 87 FNRAVGDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLT 146
Query: 1893 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 1933
K DW +RPLP YA D L+ + M+ +L
Sbjct: 147 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAEL 187
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of
Swi/snf Chromatin Remodeler
Length = 477
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 12/195 (6%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRF--QL 928
+V NG+ G+++ E P I + K E G+ + N I R ++
Sbjct: 8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNXIDAAAEKRNGDEV 67
Query: 929 KTQFD-KNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMS--- 983
T D + + ++D E + Y + + L ++ E P+V+T P N +++
Sbjct: 68 YTLVDSQGLPYNWDALEXQWRYLYDTQLKVSPE---ELPLVITXPATNGKPDXAILERYY 124
Query: 984 ELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRI 1043
EL F+ VP I+ L G S +I G +V P+I+G + + R
Sbjct: 125 ELAFDKLNVPVFQIVIEPLAIALSXG--KSSAFVIDIGASGCNVTPIIDGIVVKNAVVRS 182
Query: 1044 DLGGFSVIHHLHKLL 1058
GG + +H+ L
Sbjct: 183 KFGGDFLDFQVHERL 197
>pdb|4DID|B Chain B, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 152
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 467 IQYARTDTHYLLYVYDCMK--LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE 522
+Q+ + H L +Y+ + L ++A GKQ+ VL++ N + K+K ++P +E
Sbjct: 34 LQHQKASNHSLHNLYNLQRDLLTVAATVLGKQDPVLTSMANQMELAKVKADRPATKQE 91
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1912 IQYARTDTHYLLYVYDCMK--LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEE 1967
+Q+ + H L +Y+ + L ++A GKQ+ VL++ N + K+K ++P +E
Sbjct: 34 LQHQKASNHSLHNLYNLQRDLLTVAATVLGKQDPVLTSMANQMELAKVKADRPATKQE 91
>pdb|2WJR|A Chain A, Nanc Porin Structure In Rhombohedral Crystal Form
Length = 214
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 185 IDVMAGTKTPSVLPSQPKIVKESWNKN---AKASNVWQEVHDNKKKSANWFMLNKGAVEI 241
+DV G ++ S V E W + SN W +HDNKK++A LN VE+
Sbjct: 2 LDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENA---ALNDVQVEV 58
Query: 242 ERPQLQFKVKVDNSY 256
+ +K+D+ +
Sbjct: 59 -----NYAIKLDDQW 68
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 1630 IDVMAGTKTPSVLPSQPKIVKESWNKN---AKASNVWQEVHDNKKKSANWFMLNKGAVEI 1686
+DV G ++ S V E W + SN W +HDNKK++A LN VE+
Sbjct: 2 LDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENA---ALNDVQVEV 58
Query: 1687 ERPQLQFKVKVDNSY 1701
+ +K+D+ +
Sbjct: 59 -----NYAIKLDDQW 68
>pdb|2WJQ|A Chain A, Nanc Porin Structure In Hexagonal Crystal Form
Length = 215
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 185 IDVMAGTKTPSVLPSQPKIVKESWNKN---AKASNVWQEVHDNKKKSANWFMLNKGAVEI 241
+DV G ++ S V E W + SN W +HDNKK++A LN VE+
Sbjct: 3 LDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENA---ALNDVQVEV 59
Query: 242 ERPQLQFKVKVDNSY 256
+ +K+D+ +
Sbjct: 60 -----NYAIKLDDQW 69
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 1630 IDVMAGTKTPSVLPSQPKIVKESWNKN---AKASNVWQEVHDNKKKSANWFMLNKGAVEI 1686
+DV G ++ S V E W + SN W +HDNKK++A LN VE+
Sbjct: 3 LDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENA---ALNDVQVEV 59
Query: 1687 ERPQLQFKVKVDNSY 1701
+ +K+D+ +
Sbjct: 60 -----NYAIKLDDQW 69
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 58/267 (21%)
Query: 1482 NNKVKSRLTFKSGKLNTY----RFCDNVWTFVLTDVE---FREVAEIARVNKLKIVACDE 1534
N++V + L KSG+ Y RF D ++ V+ D+ F E E + +K D
Sbjct: 117 NDEVAAGLAAKSGERFAYDSFRRFLD-MFGNVVMDIPRSLFEEKLEHMKESKGLKNDTDL 175
Query: 1535 LSKTLDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIA-----------------SPNYIS 1577
+ L LV YK + K + FPS + L +A S N I+
Sbjct: 176 TASDLKELV-GQYKEVYLSAK-GEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQIT 233
Query: 1578 GVAGTSDKVMTLV---------DSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINT 1628
G+ GT+ V +V +L T+N + KLY E L A +
Sbjct: 234 GLRGTAVNVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGE----FLVNAQGE------- 282
Query: 1629 RIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNV-------WQEVHDNKKKSANWFMLNK 1681
DV+AG +TP L + ++ +++++ + N+ Q++ +++ W + +
Sbjct: 283 --DVVAGIRTPEDLDAMKNLMPQAYDELVENCNILESHYKEMQDIEFTVQENRLWMLQCR 340
Query: 1682 GAVEIERPQLQFKVKVDNSYEQLFEPK 1708
+ + K+ VD E L EP+
Sbjct: 341 TGKRTGKSAV--KIAVDMVNEGLVEPR 365
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 234 LNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE-----KYDAIESFC 288
+N +E + PQ++ + + ++F P+ P+A+ ++ LLE + AIE+ C
Sbjct: 269 MNPNYMEHKFPQIR-----PHPFSKVFRPR--TPPDAIDLISRLLEYTPSARLTAIEALC 321
Query: 289 HPYEYELDLYVPKEDFLKCEEPKQALPLSD-TPLMMITEPEQVTQLVSELKQQQEIAIDL 347
HP+ EL + + ++ PL + T + P+ +++LV + + + ++ +
Sbjct: 322 HPFFDEL-----RTGEARMPNGRELPPLFNWTKEELSVRPDLISRLVPQHAEAELLSRGI 376
Query: 348 EYHNYR 353
+ HN++
Sbjct: 377 DVHNFQ 382
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 1679 LNKGAVEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLE-----KYDAIESFC 1733
+N +E + PQ++ + + ++F P+ P+A+ ++ LLE + AIE+ C
Sbjct: 269 MNPNYMEHKFPQIR-----PHPFSKVFRPR--TPPDAIDLISRLLEYTPSARLTAIEALC 321
Query: 1734 HPYEYELDLYVPKEDFLKCEEPKQALPLSD-TPLMMITEPEQVTQLVSELKQQQEIAIDL 1792
HP+ EL + + ++ PL + T + P+ +++LV + + + ++ +
Sbjct: 322 HPFFDEL-----RTGEARMPNGRELPPLFNWTKEELSVRPDLISRLVPQHAEAELLSRGI 376
Query: 1793 EYHNYR 1798
+ HN++
Sbjct: 377 DVHNFQ 382
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,830,291
Number of Sequences: 62578
Number of extensions: 2347814
Number of successful extensions: 6467
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6182
Number of HSP's gapped (non-prelim): 171
length of query: 1973
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1860
effective length of database: 7,902,023
effective search space: 14697762780
effective search space used: 14697762780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)